Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16220

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
1,682,204	+		PGA1_c16200	0.40	-2.9
1,682,204	+		PGA1_c16200	0.40	-0.9
1,682,212	-		PGA1_c16200	0.41	-1.4
1,682,267	-		PGA1_c16200	0.48	-1.0
1,682,285	+		PGA1_c16200	0.50	-0.3
1,682,338	+		PGA1_c16200	0.56	+0.2
1,682,338	+		PGA1_c16200	0.56	+1.4
1,682,338	+		PGA1_c16200	0.56	-0.1
1,682,351	-		PGA1_c16200	0.57	-0.7
1,682,372	+		PGA1_c16200	0.60	-0.2
1,682,372	+		PGA1_c16200	0.60	+0.7
1,682,380	-		PGA1_c16200	0.61	-3.5
1,682,380	-		PGA1_c16200	0.61	+0.2
1,682,380	-		PGA1_c16200	0.61	+1.6
1,682,380	-		PGA1_c16200	0.61	+0.6
1,682,414	-		PGA1_c16200	0.65	+0.8
1,682,426	+		PGA1_c16200	0.66	+0.5
1,682,524	+		PGA1_c16200	0.77	+0.1
1,682,524	+		PGA1_c16200	0.77	-0.2
1,682,524	+		PGA1_c16200	0.77	+0.2
1,682,529	+		PGA1_c16200	0.78	+0.0
1,682,532	-		PGA1_c16200	0.78	+0.4
1,682,581	+		PGA1_c16200	0.84	-0.1
1,682,695	-				+0.5
1,682,712	+				-1.1
1,682,905	-		PGA1_c16210	0.39	-0.3
1,682,923	-		PGA1_c16210	0.43	-1.6
1,683,050	+		PGA1_c16210	0.69	-1.9
1,683,120	+		PGA1_c16210	0.84	+0.1
1,683,230	-				-0.6
1,683,234	-				-0.1
1,683,269	-				+0.5
1,683,295	-				+0.8
1,683,323	+				-1.4
1,683,388	-				-0.3
1,683,414	+				+0.8
1,683,422	-				-0.1
1,683,476	+		PGA1_c16220	0.12	+0.5
1,683,551	-		PGA1_c16220	0.16	+0.1
1,683,561	-		PGA1_c16220	0.16	+0.5
1,683,561	-		PGA1_c16220	0.16	+0.1
1,683,561	-		PGA1_c16220	0.16	+1.4
1,683,577	+		PGA1_c16220	0.17	+1.3
1,683,587	+		PGA1_c16220	0.17	-0.1
1,683,647	+		PGA1_c16220	0.20	-1.6
1,683,685	-		PGA1_c16220	0.21	+0.2
1,683,712	-		PGA1_c16220	0.23	+1.2
1,683,769	+		PGA1_c16220	0.25	+0.7
1,683,807	+		PGA1_c16220	0.27	+0.8
1,683,807	+		PGA1_c16220	0.27	+0.2
1,683,812	+		PGA1_c16220	0.27	+2.5
1,683,812	+		PGA1_c16220	0.27	+0.2
1,683,815	-		PGA1_c16220	0.27	+0.7
1,683,820	-		PGA1_c16220	0.27	-0.6
1,683,825	+		PGA1_c16220	0.28	+0.1
1,683,870	+		PGA1_c16220	0.30	+0.4
1,683,870	+		PGA1_c16220	0.30	+0.4
1,683,880	-		PGA1_c16220	0.30	+0.8
1,683,888	+		PGA1_c16220	0.30	-1.6
1,683,888	+		PGA1_c16220	0.30	-0.1
1,683,913	+		PGA1_c16220	0.31	-2.0
1,683,937	+		PGA1_c16220	0.33	+2.2
1,683,937	+		PGA1_c16220	0.33	+0.6
1,683,945	-		PGA1_c16220	0.33	+0.5
1,683,945	-		PGA1_c16220	0.33	+1.1
1,683,945	-		PGA1_c16220	0.33	-0.5
1,684,016	-		PGA1_c16220	0.36	-2.5
1,684,023	-		PGA1_c16220	0.36	-0.2
1,684,074	-		PGA1_c16220	0.39	-0.9
1,684,074	-		PGA1_c16220	0.39	+2.3
1,684,074	-		PGA1_c16220	0.39	-2.6
1,684,079	-		PGA1_c16220	0.39	-0.1
1,684,106	-		PGA1_c16220	0.40	-0.7
1,684,155	+		PGA1_c16220	0.42	+0.9
1,684,158	-		PGA1_c16220	0.42	-1.1
1,684,158	-		PGA1_c16220	0.42	+0.9
1,684,165	+		PGA1_c16220	0.43	+0.3
1,684,165	+		PGA1_c16220	0.43	-0.9
1,684,173	-		PGA1_c16220	0.43	+0.8
1,684,254	+		PGA1_c16220	0.46	+0.9
1,684,267	-		PGA1_c16220	0.47	-2.5
1,684,277	-		PGA1_c16220	0.48	+0.4
1,684,293	-		PGA1_c16220	0.48	-0.3
1,684,308	-		PGA1_c16220	0.49	+0.6
1,684,429	-		PGA1_c16220	0.54	-0.4
1,684,440	-		PGA1_c16220	0.55	+0.6
1,684,501	+		PGA1_c16220	0.57	+0.3
1,684,507	-		PGA1_c16220	0.58	+0.5
1,684,507	-		PGA1_c16220	0.58	-0.4
1,684,606	-		PGA1_c16220	0.62	+0.2
1,684,689	+		PGA1_c16220	0.66	-0.4
1,684,756	+		PGA1_c16220	0.69	+0.2
1,684,775	-		PGA1_c16220	0.69	-1.2
1,684,887	+		PGA1_c16220	0.74	+0.4
1,684,915	+		PGA1_c16220	0.76	+0.9
1,684,923	-		PGA1_c16220	0.76	+1.2
1,684,964	-		PGA1_c16220	0.78	+0.2
1,684,964	-		PGA1_c16220	0.78	-0.4
1,685,044	+		PGA1_c16220	0.81	+0.2
1,685,088	+		PGA1_c16220	0.83	-1.7
1,685,123	-		PGA1_c16220	0.85	+1.4
1,685,128	-		PGA1_c16220	0.85	+1.2
1,685,146	-		PGA1_c16220	0.86	+0.8
1,685,146	-		PGA1_c16220	0.86	+0.7
1,685,146	-		PGA1_c16220	0.86	+2.8
1,685,149	+		PGA1_c16220	0.86	+1.6
1,685,149	+		PGA1_c16220	0.86	+0.2
1,685,160	+		PGA1_c16220	0.86	-0.9
1,685,199	+		PGA1_c16220	0.88	-0.7
1,685,226	+		PGA1_c16220	0.89	-0.2
1,685,244	+				-1.7
1,685,244	+				+1.9
1,685,259	-				-1.1
1,685,297	-				-0.3
1,685,299	-				+1.4
1,685,459	+				-0.3
1,685,464	+				-3.3
1,685,501	-				-1.2
1,685,501	-				+0.1
1,685,501	-				+2.6
1,685,503	+				-0.1
1,685,531	+		PGA1_c16230	0.18	-1.9
1,685,581	+		PGA1_c16230	0.35	+0.9
1,685,636	+		PGA1_c16230	0.54	-0.5
1,685,665	+		PGA1_c16230	0.64	-1.7
1,685,703	-		PGA1_c16230	0.77	+0.8
1,685,704	+		PGA1_c16230	0.77	-1.1
1,685,704	+		PGA1_c16230	0.77	+0.8
1,685,781	+				+0.9
1,685,825	+				+0.3
1,685,883	-				-0.6
1,685,891	+				+0.0
1,685,891	+				-0.9
1,685,891	+				-0.9
1,685,919	-				-1.1
1,685,919	-				+0.7
1,686,058	-		PGA1_c16240	0.18	+0.3
1,686,101	+		PGA1_c16240	0.22	+0.3
1,686,109	-		PGA1_c16240	0.23	+2.1
1,686,109	-		PGA1_c16240	0.23	+0.9
1,686,111	+		PGA1_c16240	0.23	+1.7
1,686,112	-		PGA1_c16240	0.23	-1.4
1,686,186	+		PGA1_c16240	0.30	+1.7
1,686,187	-		PGA1_c16240	0.30	-0.5
1,686,190	+		PGA1_c16240	0.30	-0.9
1,686,190	+		PGA1_c16240	0.30	+0.3
1,686,190	+		PGA1_c16240	0.30	+0.3
1,686,272	+		PGA1_c16240	0.38	-0.8
1,686,445	-		PGA1_c16240	0.53	+0.0