Strain Fitness in Shewanella amazonensis SB2B around Sama_2801

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
3,339,461	-		Sama_2799	0.40	-2.1
3,339,461	-		Sama_2799	0.40	-0.0
3,339,468	-		Sama_2799	0.42	-1.7
3,339,468	-		Sama_2799	0.42	-0.1
3,339,468	-		Sama_2799	0.42	+0.2
3,339,495	+		Sama_2799	0.49	-1.4
3,339,495	+		Sama_2799	0.49	-0.1
3,339,510	+		Sama_2799	0.52	-0.9
3,339,525	+		Sama_2799	0.56	+0.4
3,339,526	-		Sama_2799	0.56	-1.6
3,339,526	-		Sama_2799	0.56	-0.7
3,339,566	-		Sama_2799	0.66	+0.1
3,339,571	+		Sama_2799	0.68	+1.3
3,339,607	+		Sama_2799	0.77	-0.0
3,339,607	+		Sama_2799	0.77	-1.1
3,339,640	+		Sama_2799	0.85	-0.6
3,339,641	-		Sama_2799	0.85	-1.9
3,339,713	+				-0.3
3,339,713	+				-0.3
3,339,714	-				+0.3
3,339,725	+				+0.1
3,339,725	+				-0.5
3,339,726	-				-0.9
3,339,726	-				+1.5
3,339,726	-				+0.7
3,339,726	-				-0.5
3,339,726	-				+0.8
3,339,773	-		Sama_2800	0.10	+0.9
3,339,773	-		Sama_2800	0.10	-1.2
3,339,789	+		Sama_2800	0.13	+0.9
3,339,789	+		Sama_2800	0.13	+1.8
3,339,790	-		Sama_2800	0.13	-1.0
3,339,790	-		Sama_2800	0.13	+0.7
3,339,790	-		Sama_2800	0.13	+0.3
3,339,790	-		Sama_2800	0.13	+0.5
3,339,819	+		Sama_2800	0.17	-0.7
3,339,820	-		Sama_2800	0.17	+0.9
3,339,824	+		Sama_2800	0.17	-1.5
3,339,824	+		Sama_2800	0.17	+1.1
3,339,825	-		Sama_2800	0.18	+0.0
3,339,825	-		Sama_2800	0.18	+0.4
3,339,844	+		Sama_2800	0.20	-0.0
3,339,845	-		Sama_2800	0.20	-1.7
3,339,845	-		Sama_2800	0.20	+0.8
3,339,860	+		Sama_2800	0.23	+0.7
3,339,860	+		Sama_2800	0.23	-1.2
3,339,860	+		Sama_2800	0.23	+0.6
3,339,860	+		Sama_2800	0.23	+2.0
3,339,860	+		Sama_2800	0.23	+0.2
3,339,861	-		Sama_2800	0.23	-0.6
3,339,861	-		Sama_2800	0.23	+0.9
3,339,861	-		Sama_2800	0.23	-0.0
3,339,861	-		Sama_2800	0.23	+1.1
3,339,861	-		Sama_2800	0.23	-0.9
3,339,861	-		Sama_2800	0.23	-0.3
3,339,861	-		Sama_2800	0.23	+1.1
3,339,861	-		Sama_2800	0.23	-0.7
3,339,861	-		Sama_2800	0.23	-0.2
3,339,922	+		Sama_2800	0.31	+0.4
3,339,923	-		Sama_2800	0.31	-0.9
3,340,006	+		Sama_2800	0.43	-0.3
3,340,006	+		Sama_2800	0.43	+0.2
3,340,006	+		Sama_2800	0.43	-1.4
3,340,006	+		Sama_2800	0.43	+1.6
3,340,006	+		Sama_2800	0.43	-0.2
3,340,006	+		Sama_2800	0.43	-1.0
3,340,006	+		Sama_2800	0.43	+0.9
3,340,007	-		Sama_2800	0.43	+4.1
3,340,007	-		Sama_2800	0.43	-0.9
3,340,007	-		Sama_2800	0.43	+1.3
3,340,007	-		Sama_2800	0.43	+0.5
3,340,007	-		Sama_2800	0.43	-1.6
3,340,007	-		Sama_2800	0.43	+2.0
3,340,105	-		Sama_2800	0.57	+0.3
3,340,124	+		Sama_2800	0.60	-0.3
3,340,124	+		Sama_2800	0.60	-3.6
3,340,124	+		Sama_2800	0.60	+2.0
3,340,124	+		Sama_2800	0.60	-1.9
3,340,124	+		Sama_2800	0.60	-0.1
3,340,125	-		Sama_2800	0.60	-1.5
3,340,125	-		Sama_2800	0.60	+1.8
3,340,125	-		Sama_2800	0.60	-0.1
3,340,125	-		Sama_2800	0.60	-1.9
3,340,125	-		Sama_2800	0.60	-0.7
3,340,125	-		Sama_2800	0.60	+0.6
3,340,125	-		Sama_2800	0.60	-0.6
3,340,145	+		Sama_2800	0.63	-1.5
3,340,145	+		Sama_2800	0.63	+0.4
3,340,145	+		Sama_2800	0.63	+0.3
3,340,145	+		Sama_2800	0.63	+1.3
3,340,146	-		Sama_2800	0.63	+0.2
3,340,226	+		Sama_2800	0.74	-1.8
3,340,227	-		Sama_2800	0.74	-2.2
3,340,240	+		Sama_2800	0.76	-0.1
3,340,240	+		Sama_2800	0.76	+0.1
3,340,240	+		Sama_2800	0.76	-2.2
3,340,241	-		Sama_2800	0.76	+0.7
3,340,242	+		Sama_2800	0.76	-0.7
3,340,242	+		Sama_2800	0.76	+1.3
3,340,242	+		Sama_2800	0.76	-0.0
3,340,242	+		Sama_2800	0.76	-1.2
3,340,242	+		Sama_2800	0.76	-0.3
3,340,242	+		Sama_2800	0.76	+1.1
3,340,242	+		Sama_2800	0.76	+0.8
3,340,242	+		Sama_2800	0.76	-1.3
3,340,242	+		Sama_2800	0.76	+0.3
3,340,242	+		Sama_2800	0.76	+2.5
3,340,242	+		Sama_2800	0.76	-0.6
3,340,243	-		Sama_2800	0.76	-0.2
3,340,243	-		Sama_2800	0.76	-2.3
3,340,243	-		Sama_2800	0.76	+0.1
3,340,243	-		Sama_2800	0.76	+0.2
3,340,243	-		Sama_2800	0.76	+0.8
3,340,243	-		Sama_2800	0.76	+1.2
3,340,243	-		Sama_2800	0.76	-0.7
3,340,243	-		Sama_2800	0.76	-2.5
3,340,246	+		Sama_2800	0.77	-0.6
3,340,246	+		Sama_2800	0.77	-0.3
3,340,246	+		Sama_2800	0.77	+1.2
3,340,246	+		Sama_2800	0.77	-0.5
3,340,246	+		Sama_2800	0.77	-0.1
3,340,246	+		Sama_2800	0.77	+0.1
3,340,247	-		Sama_2800	0.77	-1.0
3,340,317	+		Sama_2800	0.87	-0.2
3,340,356	+				+0.2
3,340,378	+				+0.3
3,340,378	+				+1.1
3,340,379	-				-0.6
3,340,408	+				-3.0
3,340,408	+				+0.5
3,340,408	+				+0.4
3,340,409	-				-0.6
3,340,409	-				-0.5
3,340,409	-				+1.4
3,340,409	-				-0.9
3,340,438	+				+0.2
3,340,438	+				-1.9
3,340,439	-				+0.2
3,340,439	-				+1.3
3,340,439	-				+0.1
3,340,439	-				-1.8
3,340,650	-		Sama_2801	0.19	-2.2
3,340,692	+		Sama_2801	0.22	+1.4
3,340,693	-		Sama_2801	0.22	+0.0
3,340,693	-		Sama_2801	0.22	-0.3
3,340,803	+		Sama_2801	0.31	-0.3
3,340,803	+		Sama_2801	0.31	+0.1
3,340,803	+		Sama_2801	0.31	-2.2
3,340,803	+		Sama_2801	0.31	-3.0
3,340,804	-		Sama_2801	0.31	-1.1
3,340,877	+		Sama_2801	0.37	-0.5
3,340,968	+		Sama_2801	0.44	+1.1
3,341,148	+		Sama_2801	0.58	+0.4
3,341,148	+		Sama_2801	0.58	-0.6
3,341,148	+		Sama_2801	0.58	+0.1
3,341,148	+		Sama_2801	0.58	-2.0
3,341,148	+		Sama_2801	0.58	+1.1
3,341,148	+		Sama_2801	0.58	+1.1
3,341,149	-		Sama_2801	0.58	-0.0
3,341,161	-		Sama_2801	0.59	-0.3
3,341,200	+		Sama_2801	0.62	+0.0
3,341,200	+		Sama_2801	0.62	-1.6
3,341,200	+		Sama_2801	0.62	-0.9
3,341,201	-		Sama_2801	0.62	-0.2
3,341,201	-		Sama_2801	0.62	-0.8
3,341,201	-		Sama_2801	0.62	-2.2
3,341,201	-		Sama_2801	0.62	-1.2
3,341,413	-		Sama_2801	0.79	+0.1
3,341,465	+		Sama_2801	0.83	-0.8
3,341,524	+		Sama_2801	0.88	-1.1
3,341,524	+		Sama_2801	0.88	+0.6
3,341,525	-		Sama_2801	0.88	+1.3
3,341,592	+				-1.3
3,341,593	-				-2.2
3,341,615	+				+2.4
3,341,616	-				+1.4
3,341,616	-				-1.3
3,341,616	-				+0.6
3,341,616	-				-2.9
3,341,649	+				-0.5
3,341,659	-				-2.2
3,341,674	+				+0.4
3,341,693	+				+1.8
3,341,693	+				-0.2
3,341,694	-				-1.9
3,341,860	-		Sama_2802	0.38	-0.3
3,341,860	-		Sama_2802	0.38	-2.3
3,341,860	-		Sama_2802	0.38	+1.5
3,341,860	-		Sama_2802	0.38	-0.2
3,341,876	-		Sama_2802	0.42	+0.2
3,341,973	+		Sama_2802	0.69	+0.3
3,342,001	+		Sama_2802	0.77	-0.6
3,342,004	+		Sama_2802	0.78	+0.6
3,342,004	+		Sama_2802	0.78	-1.0
3,342,005	-		Sama_2802	0.78	+1.6
3,342,005	-		Sama_2802	0.78	-0.1
3,342,005	-		Sama_2802	0.78	+0.0
3,342,033	-		Sama_2802	0.86	+1.5
3,342,075	+				+1.3
3,342,076	-				+1.0
3,342,076	-				+1.9
3,342,076	-				+0.9
3,342,076	-				+1.2
3,342,076	-				-0.7
3,342,077	+				-0.7
3,342,077	+				+0.7
3,342,077	+				-0.2
3,342,078	-				-2.0
3,342,104	+				-2.1
3,342,105	-				+1.5
3,342,109	+				-1.1
3,342,110	-				-1.0
3,342,110	-				+1.1
3,342,151	+				-2.3
3,342,151	+				-1.1
3,342,151	+				-1.8
3,342,151	+				+0.4
3,342,152	-				+0.9
3,342,152	-				-2.4
3,342,152	-				+0.1
3,342,152	-				-0.2
3,342,152	-				-0.1
3,342,171	-				-0.6
3,342,171	-				+0.1
3,342,190	-				-0.6
3,342,190	-				+0.2
3,342,247	+		Sama_2803	0.14	-0.7
3,342,247	+		Sama_2803	0.14	-1.4
3,342,333	+		Sama_2803	0.30	-0.9
3,342,333	+		Sama_2803	0.30	+2.1
3,342,333	+		Sama_2803	0.30	-2.2
3,342,333	+		Sama_2803	0.30	-0.5
3,342,333	+		Sama_2803	0.30	-0.8
3,342,334	-		Sama_2803	0.30	-2.4
3,342,430	-		Sama_2803	0.48	-1.3
3,342,430	-		Sama_2803	0.48	-0.7
3,342,524	+		Sama_2803	0.66	-0.0
3,342,542	-		Sama_2803	0.70	-0.9
3,342,542	-		Sama_2803	0.70	-0.8
3,342,561	+		Sama_2803	0.73	-0.6
3,342,561	+		Sama_2803	0.73	-0.8
3,342,561	+		Sama_2803	0.73	+0.8
3,342,561	+		Sama_2803	0.73	-1.3
3,342,561	+		Sama_2803	0.73	-0.8
3,342,561	+		Sama_2803	0.73	+0.8
3,342,561	+		Sama_2803	0.73	+0.5
3,342,561	+		Sama_2803	0.73	+1.1
3,342,561	+		Sama_2803	0.73	+0.8
3,342,561	+		Sama_2803	0.73	+0.2
3,342,562	-		Sama_2803	0.73	-1.7
3,342,562	-		Sama_2803	0.73	+0.6
3,342,562	-		Sama_2803	0.73	+0.5
3,342,563	+		Sama_2803	0.73	-2.1
3,342,563	+		Sama_2803	0.73	-0.5
3,342,563	+		Sama_2803	0.73	-0.8
3,342,563	+		Sama_2803	0.73	+0.3
3,342,563	+		Sama_2803	0.73	-1.6
3,342,563	+		Sama_2803	0.73	+0.6
3,342,563	+		Sama_2803	0.73	+0.7
3,342,564	-		Sama_2803	0.74	-1.0