Strain Fitness in Shewanella amazonensis SB2B around Sama_2750

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
3,288,113	+		Sama_2749	0.26	+0.8
3,288,114	-		Sama_2749	0.26	+0.7
3,288,114	-		Sama_2749	0.26	-0.6
3,288,157	+		Sama_2749	0.32	+0.7
3,288,157	+		Sama_2749	0.32	+0.1
3,288,157	+		Sama_2749	0.32	-0.2
3,288,158	-		Sama_2749	0.32	-0.3
3,288,158	-		Sama_2749	0.32	-0.8
3,288,175	-		Sama_2749	0.34	+0.5
3,288,270	+		Sama_2749	0.47	+0.2
3,288,694	-				-0.7
3,288,707	-				+0.2
3,288,741	+				+0.2
3,288,860	+				+0.1
3,288,860	+				+0.8
3,288,869	+				-0.3
3,288,870	-				-1.7
3,288,870	-				+0.5
3,288,870	-				+0.8
3,288,904	-				+0.1
3,288,904	-				+1.1
3,288,940	+				+0.6
3,288,941	-				-2.2
3,288,941	-				-1.5
3,289,009	+				-0.7
3,289,009	+				-0.1
3,289,009	+				+0.7
3,289,009	+				+0.7
3,289,009	+				+0.9
3,289,009	+				+0.6
3,289,010	-				+0.3
3,289,010	-				-0.3
3,289,010	-				-0.2
3,289,010	-				-1.0
3,289,010	-				-1.6
3,289,010	-				-0.0
3,289,038	+				+1.3
3,289,039	-				-0.1
3,289,039	-				+0.1
3,289,039	-				-0.8
3,289,039	-				+0.4
3,289,039	-				-1.7
3,289,039	-				-2.0
3,289,039	-				+0.2
3,289,113	+				-0.2
3,289,113	+				+0.1
3,289,153	-				-1.0
3,289,153	-				+0.9
3,289,185	+		Sama_2750	0.13	+0.2
3,289,186	-		Sama_2750	0.13	-0.6
3,289,186	-		Sama_2750	0.13	+0.3
3,289,186	-		Sama_2750	0.13	+0.1
3,289,186	-		Sama_2750	0.13	+0.6
3,289,186	-		Sama_2750	0.13	+0.5
3,289,189	+		Sama_2750	0.14	+0.4
3,289,189	+		Sama_2750	0.14	-2.0
3,289,190	-		Sama_2750	0.14	-1.2
3,289,190	-		Sama_2750	0.14	-0.3
3,289,219	+		Sama_2750	0.17	-1.1
3,289,219	+		Sama_2750	0.17	-1.0
3,289,219	+		Sama_2750	0.17	+1.0
3,289,219	+		Sama_2750	0.17	-0.4
3,289,219	+		Sama_2750	0.17	-0.4
3,289,219	+		Sama_2750	0.17	+1.7
3,289,219	+		Sama_2750	0.17	-0.2
3,289,219	+		Sama_2750	0.17	-1.0
3,289,219	+		Sama_2750	0.17	+1.0
3,289,220	-		Sama_2750	0.17	-0.4
3,289,220	-		Sama_2750	0.17	+0.2
3,289,220	-		Sama_2750	0.17	+0.8
3,289,220	-		Sama_2750	0.17	-1.6
3,289,220	-		Sama_2750	0.17	+0.7
3,289,220	-		Sama_2750	0.17	+0.8
3,289,220	-		Sama_2750	0.17	+1.0
3,289,220	-		Sama_2750	0.17	-1.3
3,289,220	-		Sama_2750	0.17	+0.7
3,289,220	-		Sama_2750	0.17	+2.1
3,289,223	+		Sama_2750	0.18	-0.3
3,289,223	+		Sama_2750	0.18	+1.2
3,289,224	-		Sama_2750	0.18	-0.6
3,289,224	-		Sama_2750	0.18	+1.3
3,289,258	+		Sama_2750	0.22	+0.2
3,289,258	+		Sama_2750	0.22	-1.0
3,289,258	+		Sama_2750	0.22	+1.2
3,289,258	+		Sama_2750	0.22	-0.3
3,289,259	-		Sama_2750	0.22	-0.7
3,289,259	-		Sama_2750	0.22	-0.2
3,289,278	+		Sama_2750	0.24	+2.4
3,289,278	+		Sama_2750	0.24	-0.7
3,289,278	+		Sama_2750	0.24	+1.3
3,289,278	+		Sama_2750	0.24	-0.2
3,289,278	+		Sama_2750	0.24	-0.1
3,289,278	+		Sama_2750	0.24	+1.2
3,289,279	-		Sama_2750	0.25	-1.5
3,289,279	-		Sama_2750	0.25	+1.4
3,289,279	-		Sama_2750	0.25	+0.1
3,289,279	-		Sama_2750	0.25	-0.1
3,289,279	-		Sama_2750	0.25	+1.3
3,289,289	+		Sama_2750	0.26	+2.4
3,289,290	-		Sama_2750	0.26	+0.6
3,289,376	-		Sama_2750	0.36	+1.2
3,289,376	-		Sama_2750	0.36	+2.3
3,289,434	+		Sama_2750	0.43	+0.1
3,289,434	+		Sama_2750	0.43	+0.4
3,289,435	-		Sama_2750	0.44	+0.1
3,289,505	-		Sama_2750	0.52	-1.4
3,289,505	-		Sama_2750	0.52	-1.7
3,289,505	-		Sama_2750	0.52	+1.1
3,289,560	+		Sama_2750	0.59	-1.5
3,289,560	+		Sama_2750	0.59	+1.0
3,289,561	-		Sama_2750	0.59	+0.1
3,289,599	-		Sama_2750	0.64	-0.4
3,289,602	+		Sama_2750	0.64	-0.4
3,289,602	+		Sama_2750	0.64	-0.9
3,289,602	+		Sama_2750	0.64	+0.1
3,289,603	-		Sama_2750	0.64	-0.2
3,289,610	+		Sama_2750	0.65	+0.9
3,289,610	+		Sama_2750	0.65	-0.1
3,289,610	+		Sama_2750	0.65	-0.7
3,289,610	+		Sama_2750	0.65	-0.4
3,289,611	-		Sama_2750	0.65	+0.1
3,289,611	-		Sama_2750	0.65	+1.5
3,289,632	+		Sama_2750	0.68	-1.5
3,289,632	+		Sama_2750	0.68	+0.4
3,289,632	+		Sama_2750	0.68	+1.3
3,289,632	+		Sama_2750	0.68	+0.6
3,289,632	+		Sama_2750	0.68	+0.7
3,289,633	-		Sama_2750	0.68	+0.2
3,289,633	-		Sama_2750	0.68	-0.5
3,289,633	-		Sama_2750	0.68	+1.2
3,289,708	+		Sama_2750	0.77	-0.3
3,289,708	+		Sama_2750	0.77	-0.1
3,289,708	+		Sama_2750	0.77	+0.5
3,289,708	+		Sama_2750	0.77	+2.2
3,289,708	+		Sama_2750	0.77	-0.4
3,289,709	-		Sama_2750	0.77	+0.3
3,289,709	-		Sama_2750	0.77	+0.2
3,289,709	-		Sama_2750	0.77	-0.7
3,289,738	+		Sama_2750	0.81	-1.5
3,289,738	+		Sama_2750	0.81	+2.0
3,289,739	-		Sama_2750	0.81	-1.1
3,289,894	+				+0.5
3,289,894	+				+0.1
3,289,895	-				+0.9
3,289,920	+				-0.1
3,289,920	+				-0.2
3,289,920	+				-1.1
3,289,920	+				-0.8
3,289,921	-				+2.3
3,289,921	-				+2.9
3,289,921	-				-1.0
3,289,921	-				+1.3
3,289,921	-				-1.7
3,289,921	-				-1.0
3,289,921	-				+1.5
3,289,921	-				+0.1
3,289,921	-				-3.2
3,289,925	-				-0.2
3,290,024	+		Sama_2751	0.22	+0.6
3,290,024	+		Sama_2751	0.22	-0.0
3,290,025	-		Sama_2751	0.23	-0.4
3,290,147	-		Sama_2751	0.46	-0.2
3,290,158	+		Sama_2751	0.48	+1.5
3,290,158	+		Sama_2751	0.48	-0.2
3,290,158	+		Sama_2751	0.48	-1.1
3,290,158	+		Sama_2751	0.48	+0.7
3,290,159	-		Sama_2751	0.48	-2.1
3,290,159	-		Sama_2751	0.48	+1.0
3,290,159	-		Sama_2751	0.48	-1.0
3,290,271	-		Sama_2751	0.69	+0.4
3,290,271	-		Sama_2751	0.69	+1.0
3,290,273	+		Sama_2751	0.70	-2.5
3,290,274	-		Sama_2751	0.70	+0.8
3,290,274	-		Sama_2751	0.70	-1.3
3,290,299	+		Sama_2751	0.74	+0.6
3,290,300	-		Sama_2751	0.75	+1.5
3,290,300	-		Sama_2751	0.75	-0.3
3,290,300	-		Sama_2751	0.75	+0.6
3,290,349	+		Sama_2751	0.84	+0.6
3,290,350	-		Sama_2751	0.84	-0.0
3,290,350	-		Sama_2751	0.84	-0.7
3,290,376	+		Sama_2751	0.89	+1.2
3,290,483	+				-0.4
3,290,483	+				-0.4
3,290,484	-				-0.2
3,290,484	-				-0.2
3,290,525	-				+0.7
3,290,534	+				-0.9
3,290,534	+				+0.3
3,290,534	+				+1.0
3,290,534	+				+0.3
3,290,534	+				+0.1
3,290,535	-				-1.6
3,290,535	-				+0.5
3,290,542	-				+0.5
3,290,542	-				+1.3
3,290,655	+		Sama_2752	0.32	+0.1
3,290,655	+		Sama_2752	0.32	-0.1
3,290,655	+		Sama_2752	0.32	-1.2
3,290,656	-		Sama_2752	0.32	+0.2
3,290,656	-		Sama_2752	0.32	+0.1
3,290,659	+		Sama_2752	0.33	-1.5
3,290,660	-		Sama_2752	0.33	+0.6
3,290,674	-		Sama_2752	0.36	+0.8
3,290,745	-		Sama_2752	0.54	+0.9
3,290,858	+		Sama_2752	0.81	-2.3