Strain Fitness in Shewanella amazonensis SB2B around Sama_1437

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1435 and Sama_1436 are separated by 57 nucleotidesSama_1436 and Sama_1437 are separated by 7 nucleotidesSama_1437 and Sama_1438 are separated by 110 nucleotides Sama_1435: Sama_1435 - NAD-dependent deacetylase (RefSeq), at 1,745,846 to 1,746,592 _1435 Sama_1436: Sama_1436 - hypothetical protein (RefSeq), at 1,746,650 to 1,747,036 _1436 Sama_1437: Sama_1437 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq), at 1,747,044 to 1,748,354 _1437 Sama_1438: Sama_1438 - biotin synthase (RefSeq), at 1,748,465 to 1,749,529 _1438 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -2 -1 0 1at 1746.044 kb on - strand, within Sama_1435at 1746.050 kb on - strand, within Sama_1435at 1746.160 kb on + strand, within Sama_1435at 1746.160 kb on + strand, within Sama_1435at 1746.161 kb on - strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.166 kb on + strand, within Sama_1435at 1746.167 kb on - strand, within Sama_1435at 1746.167 kb on - strand, within Sama_1435at 1746.185 kb on - strand, within Sama_1435at 1746.185 kb on - strand, within Sama_1435at 1746.219 kb on + strand, within Sama_1435at 1746.253 kb on + strand, within Sama_1435at 1746.253 kb on + strand, within Sama_1435at 1746.254 kb on - strand, within Sama_1435at 1746.263 kb on - strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.369 kb on + strand, within Sama_1435at 1746.370 kb on - strand, within Sama_1435at 1746.370 kb on - strand, within Sama_1435at 1746.374 kb on - strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.513 kb on + strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.514 kb on - strand, within Sama_1435at 1746.733 kb on + strand, within Sama_1436at 1746.749 kb on + strand, within Sama_1436at 1746.805 kb on + strand, within Sama_1436at 1746.873 kb on - strand, within Sama_1436at 1746.908 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.930 kb on + strand, within Sama_1436at 1746.931 kb on - strand, within Sama_1436at 1746.931 kb on - strand, within Sama_1436at 1746.990 kb on + strand, within Sama_1436

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,746,044 - Sama_1435 0.27 -0.2
1,746,050 - Sama_1435 0.27 -1.4
1,746,160 + Sama_1435 0.42 +0.2
1,746,160 + Sama_1435 0.42 +0.1
1,746,161 - Sama_1435 0.42 -1.2
1,746,166 + Sama_1435 0.43 -0.6
1,746,166 + Sama_1435 0.43 -1.7
1,746,166 + Sama_1435 0.43 -0.5
1,746,166 + Sama_1435 0.43 -1.1
1,746,166 + Sama_1435 0.43 -0.4
1,746,167 - Sama_1435 0.43 -0.6
1,746,167 - Sama_1435 0.43 -1.0
1,746,185 - Sama_1435 0.45 +0.0
1,746,185 - Sama_1435 0.45 -0.6
1,746,219 + Sama_1435 0.50 -0.5
1,746,253 + Sama_1435 0.54 +0.2
1,746,253 + Sama_1435 0.54 -2.0
1,746,254 - Sama_1435 0.55 +0.5
1,746,263 - Sama_1435 0.56 -0.5
1,746,369 + Sama_1435 0.70 -0.9
1,746,369 + Sama_1435 0.70 -0.5
1,746,369 + Sama_1435 0.70 -1.0
1,746,369 + Sama_1435 0.70 -1.4
1,746,369 + Sama_1435 0.70 -1.3
1,746,369 + Sama_1435 0.70 -1.4
1,746,370 - Sama_1435 0.70 -1.1
1,746,370 - Sama_1435 0.70 -1.9
1,746,374 - Sama_1435 0.71 -0.6
1,746,513 + Sama_1435 0.89 -1.1
1,746,513 + Sama_1435 0.89 -0.4
1,746,513 + Sama_1435 0.89 -0.2
1,746,513 + Sama_1435 0.89 -1.7
1,746,514 - Sama_1435 0.89 -1.0
1,746,514 - Sama_1435 0.89 -1.2
1,746,514 - Sama_1435 0.89 -0.4
1,746,514 - Sama_1435 0.89 -2.4
1,746,514 - Sama_1435 0.89 -0.7
1,746,514 - Sama_1435 0.89 +0.2
1,746,733 + Sama_1436 0.21 -0.1
1,746,749 + Sama_1436 0.26 -0.1
1,746,805 + Sama_1436 0.40 +0.6
1,746,873 - Sama_1436 0.58 +0.3
1,746,908 + Sama_1436 0.67 -1.3
1,746,930 + Sama_1436 0.72 -0.5
1,746,930 + Sama_1436 0.72 +1.6
1,746,930 + Sama_1436 0.72 -0.2
1,746,930 + Sama_1436 0.72 -0.8
1,746,931 - Sama_1436 0.73 +0.3
1,746,931 - Sama_1436 0.73 -0.6
1,746,990 + Sama_1436 0.88 -0.1

Or see this region's nucleotide sequence