Strain Fitness in Shewanella amazonensis SB2B around Sama_1263

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
1,549,679	+		Sama_1261	0.76	-0.3
1,549,681	+		Sama_1261	0.76	+0.6
1,549,682	-		Sama_1261	0.76	-0.9
1,549,709	+		Sama_1261	0.78	-0.1
1,549,709	+		Sama_1261	0.78	-0.9
1,549,710	-		Sama_1261	0.78	-1.2
1,549,718	+		Sama_1261	0.78	-0.2
1,549,719	-		Sama_1261	0.78	-1.9
1,549,754	+		Sama_1261	0.80	-1.5
1,549,754	+		Sama_1261	0.80	+1.3
1,549,760	+		Sama_1261	0.81	-1.0
1,549,761	-		Sama_1261	0.81	-0.2
1,549,761	-		Sama_1261	0.81	+0.2
1,549,821	+		Sama_1261	0.84	-2.7
1,549,822	-		Sama_1261	0.84	-1.0
1,549,822	-		Sama_1261	0.84	+0.1
1,549,822	-		Sama_1261	0.84	-0.8
1,549,859	+		Sama_1261	0.86	-2.4
1,549,859	+		Sama_1261	0.86	+0.3
1,549,859	+		Sama_1261	0.86	+0.6
1,549,859	+		Sama_1261	0.86	+0.1
1,549,859	+		Sama_1261	0.86	-0.4
1,549,859	+		Sama_1261	0.86	-1.4
1,549,859	+		Sama_1261	0.86	-0.3
1,549,860	-		Sama_1261	0.86	-0.5
1,549,860	-		Sama_1261	0.86	-1.5
1,549,861	+		Sama_1261	0.86	-1.2
1,549,861	+		Sama_1261	0.86	-0.6
1,549,861	+		Sama_1261	0.86	-1.4
1,549,861	+		Sama_1261	0.86	+0.2
1,549,862	-		Sama_1261	0.86	-0.4
1,549,862	-		Sama_1261	0.86	+1.1
1,549,908	+		Sama_1261	0.89	-1.5
1,549,908	+		Sama_1261	0.89	-2.3
1,549,908	+		Sama_1261	0.89	+0.4
1,549,916	+		Sama_1261	0.89	-0.0
1,549,916	+		Sama_1261	0.89	+1.0
1,549,916	+		Sama_1261	0.89	-1.8
1,549,916	+		Sama_1261	0.89	-0.4
1,549,916	+		Sama_1261	0.89	+2.8
1,549,916	+		Sama_1261	0.89	+1.6
1,549,916	+		Sama_1261	0.89	+0.9
1,549,916	+		Sama_1261	0.89	-0.7
1,549,916	+		Sama_1261	0.89	-0.6
1,549,916	+		Sama_1261	0.89	+0.2
1,549,917	-		Sama_1261	0.89	+0.0
1,549,917	-		Sama_1261	0.89	-0.7
1,549,917	-		Sama_1261	0.89	-0.1
1,549,917	-		Sama_1261	0.89	-2.2
1,549,917	-		Sama_1261	0.89	-0.6
1,549,918	+		Sama_1261	0.89	-1.2
1,549,918	+		Sama_1261	0.89	-0.9
1,549,918	+		Sama_1261	0.89	-0.2
1,549,918	+		Sama_1261	0.89	+0.3
1,549,918	+		Sama_1261	0.89	+0.1
1,549,919	-		Sama_1261	0.89	-0.6
1,549,919	-		Sama_1261	0.89	+1.7
1,549,919	-		Sama_1261	0.89	+1.3
1,549,919	-		Sama_1261	0.89	-0.7
1,549,946	+				+1.9
1,549,946	+				+0.6
1,549,946	+				+2.9
1,549,946	+				-0.4
1,549,947	-				+2.6
1,549,947	-				+0.9
1,549,948	+				+0.2
1,549,948	+				+0.2
1,549,948	+				-0.7
1,549,949	-				-0.2
1,549,949	-				+0.3
1,549,949	-				+1.0
1,549,949	-				+0.5
1,549,963	+				+0.2
1,549,963	+				-1.0
1,549,963	+				+0.3
1,549,964	-				+0.3
1,550,008	+				+0.2
1,550,008	+				+0.5
1,550,008	+				-0.4
1,550,008	+				+0.0
1,550,009	-				+0.5
1,550,188	+				+0.1
1,550,188	+				+0.4
1,550,188	+				+0.9
1,550,188	+				-0.1
1,550,188	+				-0.0
1,550,188	+				-1.7
1,550,188	+				-1.2
1,550,188	+				-2.0
1,550,189	-				+0.5
1,550,189	-				+0.2
1,550,189	-				+1.4
1,550,189	-				-1.6
1,550,189	-				+0.5
1,550,189	-				+0.9
1,550,189	-				+0.1
1,550,237	+				-1.2
1,550,238	-				-0.5
1,550,517	+				+0.8
1,550,517	+				-3.3
1,550,517	+				-0.3
1,550,517	+				+1.1
1,550,517	+				-1.1
1,550,517	+				-0.9
1,550,517	+				+0.9
1,550,517	+				-0.5
1,550,517	+				+0.8
1,550,518	-				+0.4
1,550,518	-				+2.1
1,550,518	-				+0.4
1,550,518	-				+0.8
1,550,575	-				-1.0
1,550,575	-				-1.1
1,550,575	-				+1.4
1,550,625	+				+1.2
1,550,637	+				-0.8
1,550,648	+				+0.4
1,550,648	+				+0.6
1,550,648	+				+1.5
1,550,649	-				+1.5
1,550,649	-				-1.3
1,550,649	-				+1.3
1,550,649	-				+0.9
1,550,649	-				+1.5
1,550,649	-				-0.3
1,550,745	+		Sama_1263	0.19	+0.6
1,550,784	-		Sama_1263	0.26	-2.6
1,550,784	-		Sama_1263	0.26	-0.6
1,550,874	+		Sama_1263	0.43	+1.9
1,550,874	+		Sama_1263	0.43	+0.0
1,550,925	+		Sama_1263	0.52	+0.8
1,550,925	+		Sama_1263	0.52	+1.0
1,550,925	+		Sama_1263	0.52	-0.3
1,550,925	+		Sama_1263	0.52	-0.6
1,550,926	-		Sama_1263	0.52	+2.2
1,550,926	-		Sama_1263	0.52	+0.3
1,550,927	+		Sama_1263	0.52	-0.0
1,550,927	+		Sama_1263	0.52	+0.6
1,550,927	+		Sama_1263	0.52	-2.0
1,550,927	+		Sama_1263	0.52	+1.9
1,550,928	-		Sama_1263	0.52	-1.3
1,550,928	-		Sama_1263	0.52	-1.6
1,550,928	-		Sama_1263	0.52	-2.0
1,551,013	+		Sama_1263	0.68	-0.7
1,551,014	-		Sama_1263	0.68	+0.1
1,551,018	-		Sama_1263	0.69	+1.2
1,551,018	-		Sama_1263	0.69	+0.1
1,551,018	-		Sama_1263	0.69	-0.4
1,551,018	-		Sama_1263	0.69	+1.1
1,551,018	-		Sama_1263	0.69	+0.2
1,551,178	+				+0.4
1,551,201	-				+0.8
1,551,201	-				-0.4
1,551,213	+				-1.5
1,551,213	+				-1.5
1,551,213	+				+1.1
1,551,214	-				+0.5
1,551,219	+				-0.5
1,551,219	+				+0.4
1,551,219	+				+0.7
1,551,219	+				-0.6
1,551,219	+				-0.2
1,551,220	-				-1.7
1,551,220	-				+0.0
1,551,220	-				-0.7
1,551,221	+				+0.6
1,551,221	+				+2.1
1,551,221	+				+0.3
1,551,221	+				-0.8
1,551,221	+				-0.6
1,551,236	+				-0.3
1,551,236	+				-0.9
1,551,237	-				+1.9
1,551,300	+		Sama_1264	0.19	-0.3
1,551,300	+		Sama_1264	0.19	-0.9
1,551,301	-		Sama_1264	0.20	+0.1
1,551,301	-		Sama_1264	0.20	-0.6
1,551,301	-		Sama_1264	0.20	+1.3
1,551,302	+		Sama_1264	0.20	+0.1
1,551,312	+		Sama_1264	0.25	-0.3
1,551,312	+		Sama_1264	0.25	-0.5
1,551,312	+		Sama_1264	0.25	+0.5
1,551,312	+		Sama_1264	0.25	+0.4
1,551,312	+		Sama_1264	0.25	+0.2
1,551,314	+		Sama_1264	0.26	-0.4
1,551,314	+		Sama_1264	0.26	-1.6
1,551,314	+		Sama_1264	0.26	-0.8
1,551,323	+		Sama_1264	0.29	-0.2
1,551,328	+		Sama_1264	0.32	-0.1
1,551,328	+		Sama_1264	0.32	+1.1
1,551,367	+		Sama_1264	0.48	+1.0
1,551,368	-		Sama_1264	0.49	-1.2
1,551,483	+				+1.5
1,551,495	+				-1.6
1,551,495	+				+1.2
1,551,495	+				-0.9
1,551,495	+				+1.3
1,551,496	-				+1.7
1,551,496	-				-1.6
1,551,496	-				-1.1
1,551,517	+				+0.3
1,551,595	-		Sama_1265	0.24	+2.4
1,551,718	+		Sama_1265	0.55	-0.7
1,551,718	+		Sama_1265	0.55	-0.8
1,551,719	-		Sama_1265	0.55	-0.4
1,551,719	-		Sama_1265	0.55	+1.4
1,551,731	+		Sama_1265	0.58	+0.1
1,551,731	+		Sama_1265	0.58	-0.6
1,551,731	+		Sama_1265	0.58	+0.4
1,551,766	+		Sama_1265	0.67	-0.4
1,551,841	+		Sama_1265	0.86	-1.1
1,551,889	+				+0.1
1,551,889	+				-1.0
1,551,889	+				-0.2
1,551,889	+				+0.6
1,551,890	-				-1.9
1,551,912	-				+0.1
1,551,946	+				-1.1
1,551,952	-				-1.2
1,551,952	-				-0.5
1,551,969	-				-2.1
1,551,969	-				+1.2
1,551,986	-				+0.3
1,552,022	-				+0.8
1,552,022	-				+1.3
1,552,027	+				-0.2
1,552,037	+				-1.8
1,552,037	+				-1.7
1,552,080	+				-0.1
1,552,101	-				-2.8
1,552,113	+				-1.4
1,552,113	+				-2.2
1,552,113	+				-0.4
1,552,147	+				+0.1
1,552,147	+				-0.1
1,552,147	+				+0.2
1,552,147	+				+1.1
1,552,147	+				+0.6
1,552,147	+				+0.4
1,552,147	+				+0.1
1,552,148	-				-0.1
1,552,148	-				+0.4
1,552,148	-				-1.6
1,552,148	-				+0.4
1,552,148	-				+0.5
1,552,148	-				-0.7
1,552,148	-				+0.2