Strain Fitness in Shewanella amazonensis SB2B around Sama_0943

Experiment: D-Glucosamine Hydrochloride (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucosamine Hydrochloride (N)
1,139,764	+		Sama_0942	0.36	-1.0
1,139,764	+		Sama_0942	0.36	+1.2
1,139,764	+		Sama_0942	0.36	+0.5
1,139,764	+		Sama_0942	0.36	-0.3
1,139,765	-		Sama_0942	0.36	-0.3
1,139,765	-		Sama_0942	0.36	+1.1
1,139,852	+		Sama_0942	0.42	+0.7
1,139,876	-		Sama_0942	0.44	-0.9
1,139,948	+		Sama_0942	0.49	-0.7
1,139,948	+		Sama_0942	0.49	-0.4
1,140,038	+		Sama_0942	0.55	+0.4
1,140,039	-		Sama_0942	0.55	-0.9
1,140,039	-		Sama_0942	0.55	-1.6
1,140,051	-		Sama_0942	0.55	-1.4
1,140,051	-		Sama_0942	0.55	-2.3
1,140,163	+		Sama_0942	0.63	+0.9
1,140,164	-		Sama_0942	0.63	+1.2
1,140,166	-		Sama_0942	0.63	+1.1
1,140,170	-		Sama_0942	0.63	-1.6
1,140,211	+		Sama_0942	0.66	-1.2
1,140,212	-		Sama_0942	0.66	+0.6
1,140,212	-		Sama_0942	0.66	-0.4
1,140,221	+		Sama_0942	0.67	+2.1
1,140,414	-		Sama_0942	0.80	-0.9
1,140,446	+		Sama_0942	0.82	+1.3
1,140,447	-		Sama_0942	0.82	-0.3
1,140,447	-		Sama_0942	0.82	+1.0
1,140,513	-		Sama_0942	0.86	-0.3
1,140,528	-		Sama_0942	0.88	-0.4
1,140,694	+				+1.4
1,140,695	-				-1.3
1,140,852	-				+1.3
1,140,898	+				+0.5
1,140,899	-				+0.3
1,140,908	+				-1.1
1,140,909	-				-0.9
1,141,021	+		Sama_0943	0.10	-0.5
1,141,021	+		Sama_0943	0.10	-1.2
1,141,022	-		Sama_0943	0.10	+0.5
1,141,022	-		Sama_0943	0.10	-0.3
1,141,024	+		Sama_0943	0.11	-0.1
1,141,024	+		Sama_0943	0.11	+0.0
1,141,025	-		Sama_0943	0.11	+1.5
1,141,083	+		Sama_0943	0.13	+0.5
1,141,084	-		Sama_0943	0.13	+0.2
1,141,084	-		Sama_0943	0.13	-2.5
1,141,207	+		Sama_0943	0.17	-1.8
1,141,207	+		Sama_0943	0.17	-2.2
1,141,207	+		Sama_0943	0.17	+0.9
1,141,207	+		Sama_0943	0.17	-2.9
1,141,207	+		Sama_0943	0.17	+0.7
1,141,207	+		Sama_0943	0.17	-1.0
1,141,208	-		Sama_0943	0.17	-0.6
1,141,208	-		Sama_0943	0.17	-2.7
1,141,208	-		Sama_0943	0.17	+1.5
1,141,208	-		Sama_0943	0.17	-0.1
1,141,208	-		Sama_0943	0.17	-0.9
1,141,210	+		Sama_0943	0.18	+0.4
1,141,210	+		Sama_0943	0.18	-0.0
1,141,210	+		Sama_0943	0.18	-0.6
1,141,210	+		Sama_0943	0.18	+0.5
1,141,210	+		Sama_0943	0.18	+1.7
1,141,210	+		Sama_0943	0.18	-0.1
1,141,211	-		Sama_0943	0.18	+0.8
1,141,211	-		Sama_0943	0.18	+0.0
1,141,211	-		Sama_0943	0.18	-0.1
1,141,211	-		Sama_0943	0.18	+1.3
1,141,211	-		Sama_0943	0.18	+1.0
1,141,215	+		Sama_0943	0.18	+1.2
1,141,215	+		Sama_0943	0.18	+0.9
1,141,216	-		Sama_0943	0.18	-0.8
1,141,216	-		Sama_0943	0.18	+0.0
1,141,230	+		Sama_0943	0.18	-1.6
1,141,230	+		Sama_0943	0.18	+0.8
1,141,230	+		Sama_0943	0.18	+0.0
1,141,241	+		Sama_0943	0.19	-0.2
1,141,242	-		Sama_0943	0.19	-0.6
1,141,242	-		Sama_0943	0.19	-1.2
1,141,252	-		Sama_0943	0.19	-0.5
1,141,252	-		Sama_0943	0.19	-0.2
1,141,297	+		Sama_0943	0.21	+0.7
1,141,298	-		Sama_0943	0.21	-2.3
1,141,298	-		Sama_0943	0.21	+0.2
1,141,330	+		Sama_0943	0.22	+0.4
1,141,330	+		Sama_0943	0.22	+0.1
1,141,331	-		Sama_0943	0.22	+0.8
1,141,331	-		Sama_0943	0.22	-1.5
1,141,403	+		Sama_0943	0.25	-0.2
1,141,404	-		Sama_0943	0.25	-2.0
1,141,404	-		Sama_0943	0.25	-0.3
1,141,434	-		Sama_0943	0.26	+0.6
1,141,434	-		Sama_0943	0.26	-0.8
1,141,498	-		Sama_0943	0.28	-0.5
1,141,573	-		Sama_0943	0.31	-1.5
1,141,603	-		Sama_0943	0.32	-0.0
1,141,603	-		Sama_0943	0.32	+0.7
1,141,611	-		Sama_0943	0.33	-0.3
1,141,640	-		Sama_0943	0.34	-2.0
1,141,651	-		Sama_0943	0.34	-0.6
1,141,651	-		Sama_0943	0.34	+0.7
1,141,675	-		Sama_0943	0.35	+0.4
1,141,702	+		Sama_0943	0.36	+0.6
1,141,749	+		Sama_0943	0.38	-1.4
1,141,749	+		Sama_0943	0.38	+1.1
1,141,749	+		Sama_0943	0.38	+0.8
1,141,783	+		Sama_0943	0.39	-0.5
1,141,783	+		Sama_0943	0.39	+0.8
1,141,783	+		Sama_0943	0.39	-0.5
1,141,784	-		Sama_0943	0.39	-1.1
1,141,844	+		Sama_0943	0.41	-0.4
1,141,844	+		Sama_0943	0.41	-0.2
1,141,844	+		Sama_0943	0.41	-0.9
1,141,845	-		Sama_0943	0.41	-0.8
1,141,845	-		Sama_0943	0.41	+0.3
1,141,871	-		Sama_0943	0.42	+0.4
1,141,872	+		Sama_0943	0.42	+0.8
1,141,872	+		Sama_0943	0.42	+0.3
1,141,872	+		Sama_0943	0.42	+0.6
1,141,872	+		Sama_0943	0.42	+2.3
1,141,873	-		Sama_0943	0.42	+0.4
1,141,873	-		Sama_0943	0.42	-1.9
1,141,873	-		Sama_0943	0.42	-1.2
1,141,878	+		Sama_0943	0.43	-1.2
1,141,879	-		Sama_0943	0.43	+0.2
1,141,990	-		Sama_0943	0.47	+0.8
1,141,990	-		Sama_0943	0.47	-1.9
1,142,050	+		Sama_0943	0.49	+0.2
1,142,050	+		Sama_0943	0.49	-0.7
1,142,051	-		Sama_0943	0.49	-0.9
1,142,051	-		Sama_0943	0.49	-1.2
1,142,066	-		Sama_0943	0.50	+0.1
1,142,066	-		Sama_0943	0.50	+2.1
1,142,067	+		Sama_0943	0.50	+0.3
1,142,067	+		Sama_0943	0.50	+0.1
1,142,067	+		Sama_0943	0.50	+0.4
1,142,068	-		Sama_0943	0.50	-0.4
1,142,068	-		Sama_0943	0.50	+0.7
1,142,068	-		Sama_0943	0.50	+0.3
1,142,083	+		Sama_0943	0.50	-0.2
1,142,083	+		Sama_0943	0.50	+0.7
1,142,083	+		Sama_0943	0.50	-1.5
1,142,170	+		Sama_0943	0.54	+0.2
1,142,238	+		Sama_0943	0.56	+1.1
1,142,238	+		Sama_0943	0.56	+1.4
1,142,238	+		Sama_0943	0.56	-1.9
1,142,248	+		Sama_0943	0.57	+1.0
1,142,248	+		Sama_0943	0.57	+0.2
1,142,256	+		Sama_0943	0.57	-0.9
1,142,257	-		Sama_0943	0.57	+0.4
1,142,263	+		Sama_0943	0.57	-1.6
1,142,263	+		Sama_0943	0.57	-0.7
1,142,263	+		Sama_0943	0.57	-0.8
1,142,266	+		Sama_0943	0.57	+0.2
1,142,266	+		Sama_0943	0.57	-0.7
1,142,305	+		Sama_0943	0.59	-0.5
1,142,305	+		Sama_0943	0.59	-1.5
1,142,306	-		Sama_0943	0.59	-0.7
1,142,324	+		Sama_0943	0.59	+1.5
1,142,325	-		Sama_0943	0.60	-0.7
1,142,325	-		Sama_0943	0.60	-0.2
1,142,349	+		Sama_0943	0.60	+0.5
1,142,349	+		Sama_0943	0.60	-0.1
1,142,350	-		Sama_0943	0.60	-2.2
1,142,449	-		Sama_0943	0.64	-0.7
1,142,488	+		Sama_0943	0.66	+1.0
1,142,488	+		Sama_0943	0.66	+0.9
1,142,488	+		Sama_0943	0.66	+0.5
1,142,488	+		Sama_0943	0.66	+0.0
1,142,488	+		Sama_0943	0.66	-0.7
1,142,488	+		Sama_0943	0.66	+0.8
1,142,488	+		Sama_0943	0.66	+2.0
1,142,488	+		Sama_0943	0.66	-0.9
1,142,488	+		Sama_0943	0.66	-1.0
1,142,488	+		Sama_0943	0.66	+2.8
1,142,488	+		Sama_0943	0.66	-1.3
1,142,488	+		Sama_0943	0.66	+0.1
1,142,489	-		Sama_0943	0.66	+0.3
1,142,489	-		Sama_0943	0.66	-0.4
1,142,489	-		Sama_0943	0.66	-2.2
1,142,489	-		Sama_0943	0.66	-0.2
1,142,489	-		Sama_0943	0.66	-0.4
1,142,489	-		Sama_0943	0.66	-0.0
1,142,489	-		Sama_0943	0.66	+0.3
1,142,489	-		Sama_0943	0.66	-0.5
1,142,489	-		Sama_0943	0.66	-1.4
1,142,655	+		Sama_0943	0.72	-1.1
1,142,683	-		Sama_0943	0.73	+0.7
1,142,698	+		Sama_0943	0.74	-0.6
1,142,699	-		Sama_0943	0.74	+0.7
1,142,699	-		Sama_0943	0.74	+0.5
1,142,699	-		Sama_0943	0.74	+0.4
1,142,713	+		Sama_0943	0.74	-0.1
1,142,714	-		Sama_0943	0.74	-0.9
1,142,714	-		Sama_0943	0.74	-1.8
1,142,740	+		Sama_0943	0.75	-2.0
1,142,741	-		Sama_0943	0.75	-0.4
1,142,743	+		Sama_0943	0.75	-0.2
1,142,743	+		Sama_0943	0.75	+0.9
1,142,744	-		Sama_0943	0.75	+1.6
1,142,744	-		Sama_0943	0.75	+0.2
1,142,787	+		Sama_0943	0.77	+0.9
1,142,830	-		Sama_0943	0.79	-1.1
1,142,830	-		Sama_0943	0.79	-1.8
1,142,901	+		Sama_0943	0.81	+1.6
1,142,901	+		Sama_0943	0.81	+2.0
1,142,901	+		Sama_0943	0.81	+2.1
1,142,901	+		Sama_0943	0.81	-0.3
1,142,901	+		Sama_0943	0.81	+1.0
1,142,902	-		Sama_0943	0.81	-1.4
1,142,902	-		Sama_0943	0.81	-0.1
1,142,914	-		Sama_0943	0.82	-1.6
1,142,923	+		Sama_0943	0.82	-0.9
1,142,923	+		Sama_0943	0.82	-1.4
1,142,923	+		Sama_0943	0.82	-2.0
1,142,923	+		Sama_0943	0.82	-0.2
1,142,923	+		Sama_0943	0.82	-0.1
1,142,923	+		Sama_0943	0.82	+0.1
1,142,924	-		Sama_0943	0.82	-0.6
1,142,924	-		Sama_0943	0.82	-0.9
1,142,924	-		Sama_0943	0.82	-0.3
1,142,924	-		Sama_0943	0.82	-0.4
1,142,924	-		Sama_0943	0.82	-1.7
1,142,980	+		Sama_0943	0.84	+1.5
1,142,980	+		Sama_0943	0.84	+1.7
1,142,980	+		Sama_0943	0.84	+1.6
1,142,980	+		Sama_0943	0.84	-0.1
1,142,980	+		Sama_0943	0.84	+0.7
1,142,981	-		Sama_0943	0.84	+1.3
1,142,981	-		Sama_0943	0.84	+0.4
1,142,981	-		Sama_0943	0.84	+1.0
1,142,981	-		Sama_0943	0.84	-0.9
1,142,981	-		Sama_0943	0.84	+0.6
1,142,981	-		Sama_0943	0.84	-2.4
1,143,044	+		Sama_0943	0.87	+3.3
1,143,045	-		Sama_0943	0.87	-0.9
1,143,045	-		Sama_0943	0.87	-0.1
1,143,049	+		Sama_0943	0.87	+2.1
1,143,049	+		Sama_0943	0.87	+1.5
1,143,050	-		Sama_0943	0.87	+0.6
1,143,050	-		Sama_0943	0.87	+1.9
1,143,070	+		Sama_0943	0.88	+2.4
1,143,070	+		Sama_0943	0.88	-0.1
1,143,071	-		Sama_0943	0.88	-2.6
1,143,071	-		Sama_0943	0.88	-1.2
1,143,072	+		Sama_0943	0.88	-0.2
1,143,231	+				-0.3
1,143,231	+				+1.8
1,143,231	+				+0.3
1,143,231	+				+1.3
1,143,231	+				+1.8
1,143,231	+				+2.0
1,143,231	+				-0.8
1,143,231	+				-1.5
1,143,231	+				+2.0
1,143,231	+				+0.9
1,143,232	-				-1.4
1,143,232	-				-0.5
1,143,232	-				-1.3
1,143,232	-				+1.2
1,143,232	-				-2.5
1,143,232	-				-2.8
1,143,232	-				-0.7
1,143,274	+				+1.2
1,143,274	+				+1.5
1,143,304	+				+1.7
1,143,304	+				+1.1
1,143,304	+				+1.3
1,143,304	+				+1.6
1,143,304	+				+0.6
1,143,304	+				+1.5
1,143,305	-				-0.4
1,143,305	-				-1.3
1,143,317	+				-0.3
1,143,332	+				+0.9
1,143,351	+				+0.7
1,143,352	-				-0.6
1,143,352	-				-0.6
1,143,372	+				-0.1
1,143,397	+				-0.1
1,143,398	-				-0.4
1,143,408	+				+0.8
1,143,539	+				+1.5
1,143,550	+				+1.5
1,143,555	+				-0.1
1,143,567	-				-1.5
1,143,653	-				-1.8
1,143,653	-				-1.1
1,143,660	+				-1.3
1,143,662	+				-1.9
1,143,662	+				-1.8
1,143,662	+				+0.1
1,143,662	+				+0.1
1,143,662	+				-1.6
1,143,662	+				-2.0
1,143,662	+				-0.9
1,143,662	+				-2.2
1,143,662	+				-1.7
1,143,662	+				+0.7
1,143,663	-				-1.4
1,143,663	-				-2.0
1,143,663	-				-0.5
1,143,663	-				+0.2
1,143,663	-				-1.8
1,143,663	-				-0.9
1,143,663	-				-1.6
1,143,663	-				-1.4
1,143,679	-				+0.9
1,143,679	-				-1.3
1,143,697	+				-2.3
1,143,697	+				-0.6
1,143,697	+				-0.4
1,143,697	+				-1.8
1,143,697	+				-1.4
1,143,899	+		Sama_0944	0.31	-0.2
1,143,899	+		Sama_0944	0.31	-1.0
1,143,900	-		Sama_0944	0.31	-1.2
1,143,931	+		Sama_0944	0.34	-1.3
1,143,931	+		Sama_0944	0.34	-0.2
1,143,931	+		Sama_0944	0.34	-1.0
1,143,931	+		Sama_0944	0.34	-2.1
1,143,931	+		Sama_0944	0.34	-0.6
1,143,931	+		Sama_0944	0.34	-2.5
1,143,931	+		Sama_0944	0.34	+1.4
1,143,932	-		Sama_0944	0.35	-0.0
1,143,932	-		Sama_0944	0.35	-1.5
1,143,932	-		Sama_0944	0.35	-2.3
1,143,932	-		Sama_0944	0.35	-1.9
1,143,932	-		Sama_0944	0.35	-1.1
1,143,932	-		Sama_0944	0.35	-1.1
1,143,932	-		Sama_0944	0.35	-0.5
1,143,947	+		Sama_0944	0.36	-1.1
1,143,947	+		Sama_0944	0.36	-1.0
1,143,947	+		Sama_0944	0.36	-2.2
1,143,948	-		Sama_0944	0.36	-1.4
1,143,948	-		Sama_0944	0.36	-0.2
1,143,948	-		Sama_0944	0.36	-1.2
1,144,021	+		Sama_0944	0.44	-3.4
1,144,021	+		Sama_0944	0.44	-2.1
1,144,021	+		Sama_0944	0.44	-0.3
1,144,021	+		Sama_0944	0.44	-0.3
1,144,047	+		Sama_0944	0.47	-0.3
1,144,127	+		Sama_0944	0.56	-1.8
1,144,127	+		Sama_0944	0.56	+0.4
1,144,127	+		Sama_0944	0.56	-1.2
1,144,127	+		Sama_0944	0.56	-2.7
1,144,128	-		Sama_0944	0.56	-2.4
1,144,246	+		Sama_0944	0.69	-2.3
1,144,330	+		Sama_0944	0.78	+0.4
1,144,330	+		Sama_0944	0.78	-0.1
1,144,330	+		Sama_0944	0.78	-0.9
1,144,331	-		Sama_0944	0.79	+0.2
1,144,360	-		Sama_0944	0.82	-1.6