Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1289

Experiment: Xylitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1288 and Dshi_1289 are separated by 47 nucleotidesDshi_1289 and Dshi_1290 are separated by 91 nucleotides Dshi_1288: Dshi_1288 - amidohydrolase (RefSeq), at 1,341,315 to 1,342,481 _1288 Dshi_1289: Dshi_1289 - glutamine amidotransferase class-I (RefSeq), at 1,342,529 to 1,343,269 _1289 Dshi_1290: Dshi_1290 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,343,361 to 1,344,371 _1290 Position (kb) 1342 1343 1344Strain fitness (log2 ratio) -1 0 1at 1341.603 kb on - strand, within Dshi_1288at 1341.964 kb on + strand, within Dshi_1288at 1341.989 kb on + strand, within Dshi_1288at 1342.164 kb on + strand, within Dshi_1288at 1342.208 kb on - strand, within Dshi_1288at 1342.298 kb on + strand, within Dshi_1288at 1342.443 kb on + strandat 1343.019 kb on - strand, within Dshi_1289at 1343.019 kb on - strand, within Dshi_1289at 1343.126 kb on + strand, within Dshi_1289at 1343.263 kb on + strandat 1343.568 kb on + strand, within Dshi_1290at 1344.216 kb on + strand, within Dshi_1290

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylitol (C)
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1,341,603 - Dshi_1288 0.25 -0.4
1,341,964 + Dshi_1288 0.56 -0.8
1,341,989 + Dshi_1288 0.58 +0.6
1,342,164 + Dshi_1288 0.73 +0.2
1,342,208 - Dshi_1288 0.77 -0.8
1,342,298 + Dshi_1288 0.84 -0.1
1,342,443 + -0.6
1,343,019 - Dshi_1289 0.66 -0.7
1,343,019 - Dshi_1289 0.66 +0.2
1,343,126 + Dshi_1289 0.81 -0.9
1,343,263 + -0.4
1,343,568 + Dshi_1290 0.20 -1.5
1,344,216 + Dshi_1290 0.85 -0.5

Or see this region's nucleotide sequence