Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0242 and Dshi_0243 overlap by 4 nucleotides Dshi_0243 and Dshi_0244 are separated by 9 nucleotides
Dshi_0242: Dshi_0242 - fatty acid hydroxylase (RefSeq), at 239,815 to 240,792
_0242
Dshi_0243: Dshi_0243 - acyltransferase 3 (RefSeq), at 240,789 to 241,940
_0243
Dshi_0244: Dshi_0244 - alanine dehydrogenase (RefSeq), at 241,950 to 243,065
_0244
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.813 kb on + strand at 239.894 kb on - strand at 239.900 kb on + strand at 239.931 kb on - strand, within Dshi_0242 at 239.951 kb on - strand, within Dshi_0242 at 240.001 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.229 kb on - strand, within Dshi_0242 at 240.256 kb on + strand, within Dshi_0242 at 240.264 kb on - strand, within Dshi_0242 at 240.341 kb on + strand, within Dshi_0242 at 240.365 kb on + strand, within Dshi_0242 at 240.378 kb on - strand, within Dshi_0242 at 240.477 kb on - strand, within Dshi_0242 at 240.483 kb on + strand, within Dshi_0242 at 240.491 kb on + strand, within Dshi_0242 at 240.518 kb on + strand, within Dshi_0242 at 240.656 kb on - strand, within Dshi_0242 at 240.890 kb on - strand at 240.986 kb on - strand, within Dshi_0243 at 240.991 kb on - strand at 241.053 kb on + strand, within Dshi_0243 at 241.084 kb on - strand, within Dshi_0243 at 241.228 kb on + strand, within Dshi_0243 at 241.288 kb on + strand, within Dshi_0243 at 241.288 kb on + strand, within Dshi_0243 at 241.546 kb on + strand, within Dshi_0243 at 241.636 kb on + strand, within Dshi_0243 at 241.703 kb on + strand, within Dshi_0243 at 241.800 kb on + strand, within Dshi_0243 at 241.809 kb on + strand, within Dshi_0243 at 241.846 kb on - strand at 242.082 kb on + strand, within Dshi_0244 at 242.085 kb on - strand, within Dshi_0244 at 242.104 kb on + strand, within Dshi_0244 at 242.205 kb on - strand, within Dshi_0244 at 242.245 kb on + strand, within Dshi_0244 at 242.319 kb on - strand, within Dshi_0244 at 242.480 kb on - strand, within Dshi_0244 at 242.480 kb on - strand, within Dshi_0244 at 242.552 kb on - strand, within Dshi_0244 at 242.564 kb on + strand, within Dshi_0244 at 242.596 kb on - strand, within Dshi_0244 at 242.734 kb on + strand, within Dshi_0244 at 242.857 kb on + strand, within Dshi_0244 at 242.879 kb on + strand, within Dshi_0244 at 242.911 kb on - strand, within Dshi_0244 at 242.924 kb on - strand, within Dshi_0244
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 239,813 + -0.6 239,894 - +0.0 239,900 + -0.4 239,931 - Dshi_0242 0.12 +0.1 239,951 - Dshi_0242 0.14 -2.4 240,001 - Dshi_0242 0.19 -0.9 240,062 - Dshi_0242 0.25 -1.0 240,062 - Dshi_0242 0.25 -0.1 240,229 - Dshi_0242 0.42 -0.1 240,256 + Dshi_0242 0.45 +2.0 240,264 - Dshi_0242 0.46 -0.2 240,341 + Dshi_0242 0.54 +0.5 240,365 + Dshi_0242 0.56 +1.2 240,378 - Dshi_0242 0.58 +1.3 240,477 - Dshi_0242 0.68 +0.0 240,483 + Dshi_0242 0.68 +0.3 240,491 + Dshi_0242 0.69 -0.0 240,518 + Dshi_0242 0.72 -0.4 240,656 - Dshi_0242 0.86 +0.9 240,890 - -0.0 240,986 - Dshi_0243 0.17 +0.5 240,991 - -1.6 241,053 + Dshi_0243 0.23 +1.7 241,084 - Dshi_0243 0.26 -0.7 241,228 + Dshi_0243 0.38 -0.8 241,288 + Dshi_0243 0.43 +0.2 241,288 + Dshi_0243 0.43 -0.6 241,546 + Dshi_0243 0.66 +1.4 241,636 + Dshi_0243 0.74 +0.6 241,703 + Dshi_0243 0.79 -2.4 241,800 + Dshi_0243 0.88 -0.9 241,809 + Dshi_0243 0.89 +0.1 241,846 - +1.0 242,082 + Dshi_0244 0.12 +1.5 242,085 - Dshi_0244 0.12 +0.3 242,104 + Dshi_0244 0.14 +0.3 242,205 - Dshi_0244 0.23 +0.0 242,245 + Dshi_0244 0.26 +0.8 242,319 - Dshi_0244 0.33 +0.1 242,480 - Dshi_0244 0.47 -0.4 242,480 - Dshi_0244 0.47 -0.5 242,552 - Dshi_0244 0.54 -0.7 242,564 + Dshi_0244 0.55 -0.0 242,596 - Dshi_0244 0.58 +0.1 242,734 + Dshi_0244 0.70 +0.4 242,857 + Dshi_0244 0.81 -1.0 242,879 + Dshi_0244 0.83 +1.1 242,911 - Dshi_0244 0.86 +0.8 242,924 - Dshi_0244 0.87 -0.3
Or see this region's nucleotide sequence