Strain Fitness in Shewanella oneidensis MR-1 around SOA0048

Experiment: pyruvate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pyruvate (C)
34,928	+				+0.1
34,928	+				+0.7
34,951	-				-0.0
34,951	-				-0.3
34,958	-				-1.3
35,020	-				+0.4
35,029	+				-0.4
35,029	+				-0.0
35,029	+				+0.1
35,031	-				-0.9
35,039	-				+0.3
35,048	+				+0.5
35,070	-				+0.2
35,076	-				-1.8
35,078	+				+0.3
35,082	+				+0.3
35,090	-				-0.1
35,095	+				+0.9
35,103	-				+2.0
35,112	+				+0.2
35,112	+				+0.3
35,112	+				-0.2
35,120	-				-0.5
35,120	-				+0.6
35,138	+				-0.5
35,141	-				-0.1
35,143	+				-0.3
35,143	+				+0.3
35,143	+				-0.1
35,151	-		SOA0046	0.16	+0.3
35,151	-		SOA0046	0.16	-0.1
35,151	-		SOA0046	0.16	-0.2
35,151	-		SOA0046	0.16	+0.1
35,152	+		SOA0046	0.17	+0.2
35,159	+		SOA0046	0.24	-0.9
35,162	+		SOA0046	0.26	+0.1
35,169	+		SOA0046	0.33	+1.1
35,170	+		SOA0046	0.34	-0.2
35,170	+		SOA0046	0.34	-0.2
35,176	+		SOA0046	0.40	+1.3
35,176	+		SOA0046	0.40	+0.9
35,177	+		SOA0046	0.41	-0.3
35,177	+		SOA0046	0.41	+0.6
35,177	+		SOA0046	0.41	-0.4
35,177	+		SOA0046	0.41	+0.8
35,177	+		SOA0046	0.41	+0.6
35,177	+		SOA0046	0.41	+0.3
35,177	-		SOA0046	0.41	-2.3
35,178	-		SOA0046	0.42	+0.9
35,178	-		SOA0046	0.42	-0.7
35,178	-		SOA0046	0.42	-0.1
35,184	-		SOA0046	0.48	+0.8
35,184	-		SOA0046	0.48	+1.0
35,184	-		SOA0046	0.48	-0.0
35,185	-		SOA0046	0.49	+0.3
35,205	+		SOA0046	0.69	+2.1
35,233	-				+0.4
35,238	+				+0.5
35,248	+				+0.4
35,248	+				-0.9
35,248	+				+0.0
35,248	+				+1.1
35,256	-				-1.3
35,256	-				-0.3
35,258	+				-0.2
35,258	+				-0.0
35,258	+				-0.2
35,258	+				-0.9
35,261	-				-0.2
35,263	+				+1.0
35,263	+				+1.3
35,263	+				-0.2
35,263	+				-0.7
35,263	+				-0.5
35,266	-				+0.3
35,266	-				-0.5
35,266	-				+0.3
35,266	-				+0.3
35,266	-				+1.3
35,266	-				-0.5
35,266	-				+0.2
35,266	-				-0.4
35,271	-				+0.2
35,271	-				+0.2
35,271	-				+0.5
35,271	-				-0.5
35,271	-				-1.0
35,279	+				-0.3
35,279	+				+1.2
35,295	+				-2.3
35,303	-				+0.4
35,308	+				-0.7
35,309	+				-2.3
35,309	+				-0.5
35,357	-				+0.3
35,357	-				+0.8
35,357	-				+1.3
35,357	-				+0.1
35,357	-				-0.0
35,357	-				-0.4
35,359	-				-1.3
35,396	+				+0.4
35,396	+				-0.7
35,404	-				+1.2
35,404	-				+0.1
35,404	-				+0.3
35,404	-				+0.2
35,434	+				-0.1
35,442	-				-0.4
35,474	+		SO_A0047	0.13	-1.3
35,478	-		SO_A0047	0.14	+1.8
35,481	+		SO_A0047	0.15	-0.4
35,497	-		SO_A0047	0.20	+0.9
35,497	-		SO_A0047	0.20	-0.3
35,497	-		SO_A0047	0.20	-0.0
35,497	-		SO_A0047	0.20	-2.7
35,503	-		SO_A0047	0.22	+0.2
35,504	+		SO_A0047	0.22	+0.2
35,517	+		SO_A0047	0.26	+0.3
35,517	+		SO_A0047	0.26	+0.3
35,530	-		SO_A0047	0.30	-0.1
35,532	+		SO_A0047	0.31	+1.1
35,532	+		SO_A0047	0.31	-0.7
35,532	+		SO_A0047	0.31	+0.1
35,532	+		SO_A0047	0.31	+0.1
35,540	-		SO_A0047	0.33	-0.1
35,540	-		SO_A0047	0.33	-0.7
35,540	-		SO_A0047	0.33	+0.6
35,540	-		SO_A0047	0.33	+0.8
35,540	-		SO_A0047	0.33	+0.5
35,540	-		SO_A0047	0.33	-0.8
35,544	+		SO_A0047	0.34	+0.8
35,550	+		SO_A0047	0.36	-0.7
35,550	+		SO_A0047	0.36	+0.3
35,557	-		SO_A0047	0.38	-0.5
35,619	+		SO_A0047	0.57	-0.4
35,626	+		SO_A0047	0.59	+0.0
35,628	+		SO_A0047	0.59	+1.3
35,634	-		SO_A0047	0.61	+1.0
35,636	-		SO_A0047	0.62	+0.3
35,648	-		SO_A0047	0.65	+0.2
35,655	+		SO_A0047	0.68	-0.6
35,665	-		SO_A0047	0.71	+0.9
35,665	-		SO_A0047	0.71	-0.0
35,685	+		SO_A0047	0.77	+0.3
35,693	-		SO_A0047	0.79	+0.4
35,693	-		SO_A0047	0.79	+0.9
35,693	-		SO_A0047	0.79	+0.1
35,707	-		SO_A0047	0.83	-0.0
35,714	+		SO_A0047	0.85	+0.4
35,715	+		SO_A0047	0.86	+0.5
35,715	+		SO_A0047	0.86	+0.1
35,722	-		SO_A0047	0.88	-0.4
35,722	-		SO_A0047	0.88	+0.7
35,723	-		SO_A0047	0.88	+0.8
35,723	-		SO_A0047	0.88	+1.0
35,723	-		SO_A0047	0.88	-0.7
35,755	-				-0.6
35,784	+				+1.7
35,784	+				+0.1
35,784	+				+0.7
35,784	+				+1.1
35,792	-				+0.7
35,792	-				+0.8
35,792	-				-0.0
35,792	-				-0.3
35,792	-				+0.6
35,793	+				-0.7
35,800	+				+0.6
35,802	-				-0.4
35,802	-				-0.1
35,803	-				-0.3
35,808	-				-0.6
35,808	-				+0.3
35,808	-				+0.3
35,812	-				-0.2
35,838	-				+0.3
35,840	+				+0.2
35,845	+				-1.1
35,845	+				+0.6
35,845	+				+0.2
35,845	+				-1.0
35,845	+				+1.1
35,848	-				+0.3
35,853	-				+0.3
35,853	-				-0.1
35,853	-				+1.5
35,853	-				-0.4
35,853	-				-0.6
35,853	-				+0.6
35,853	-				-0.9
35,853	-				-0.2
35,853	-				+0.1
35,853	-				+0.6
35,853	-				-0.4
35,853	-				+0.0
35,853	-				-0.7
35,853	-				+0.1
35,873	+				+0.0
35,885	-				-0.1
35,887	+				+1.1
35,887	+				-0.5
35,887	+				+0.5
35,887	+				-0.2
35,887	+				+0.5
35,887	+				+0.0
35,887	+				+0.0
35,887	+				+2.0
35,887	+				+0.0
35,887	+				-0.7
35,887	+				-1.0
35,890	-				-0.2
35,890	-				-1.0
35,890	-				+0.2
35,892	+				-0.9
35,892	+				+0.2
35,892	+				+1.1
35,892	+				+0.2
35,892	+				-1.4
35,892	+				+0.7
35,892	+				-0.0
35,892	+				-0.7
35,895	-				-0.7
35,895	-				+0.3
35,895	-				+0.7
35,895	-				-0.1
35,895	-				+1.3
35,895	-				-1.3
35,895	-				-0.4
35,895	-				-0.1
35,895	-				+0.1
35,895	-				-0.2
35,895	-				-0.4
35,895	-				+0.3
35,895	-				-0.7
35,895	-				+0.7
35,895	-				-0.3
35,895	-				+1.2
35,895	-				-0.7
35,895	-				+0.3
35,895	-				-0.0
35,895	-				-0.5
35,895	-				+0.2
35,897	+				-0.3
35,900	-				-0.3
35,900	-				+0.6
35,900	-				+0.4
35,900	-				-1.4
35,900	-				+0.8
35,900	-				-1.1
35,900	-				-0.4
35,900	-				+0.8
35,900	-				-0.7
35,905	-				-1.0
35,907	+				+1.3
35,916	-				-0.3
35,964	+				+1.1
35,972	-				-0.4
35,977	-				+0.9
36,004	+				+0.8
36,012	-				-0.5
36,012	-				-0.9
36,020	-				+1.0
36,026	+				-0.5
36,045	+				+0.3
36,045	+				-0.2
36,053	-				-0.9
36,053	-				-1.7
36,053	-				+0.2
36,053	-				+0.7
36,054	-				-0.2
36,056	+				+0.5
36,064	+				-1.1
36,064	+				-1.0
36,064	+				-0.6
36,064	+				-0.9
36,064	+				-0.1
36,064	+				-0.4
36,064	+				-0.3
36,064	+				+0.1
36,064	+				-0.6
36,064	-				-0.7
36,065	-				-0.8
36,065	-				-0.6
36,066	-				+0.9
36,067	+				-0.5
36,072	-				+0.8
36,072	-				-0.8
36,072	-				-1.4
36,072	-				-0.3
36,072	-				+0.1
36,072	-				+0.5
36,072	-				-0.6
36,072	-				-0.5
36,072	-				+0.5
36,072	-				-0.1
36,072	-				-0.0
36,072	-				-3.7
36,072	-				-0.6
36,072	-				-0.2
36,072	-				+0.8
36,077	+				-0.8
36,077	+				-1.0
36,077	+				+1.1
36,077	+				-0.6
36,077	+				+0.1
36,077	+				+1.0
36,077	+				-0.3
36,077	+				+0.1
36,077	-				+0.7
36,077	-				+0.0
36,080	-				-0.4
36,085	-				+0.3
36,085	-				+0.0
36,086	+				-0.5
36,088	+				-0.7
36,088	+				-1.0
36,088	+				-0.6
36,088	+				+0.4
36,088	+				-0.7
36,088	+				+0.2
36,088	+				+0.2
36,088	+				+0.0
36,088	+				+0.2
36,088	+				-0.8
36,088	+				-1.4
36,088	+				-1.4
36,088	+				-0.0
36,088	+				+0.2
36,088	+				-0.0
36,088	+				+0.3
36,088	+				-0.4
36,090	+				-0.2
36,095	-				-0.2
36,095	-				-0.1
36,095	-				-0.1
36,095	-				-1.2
36,095	-				-0.4
36,095	-				-0.2
36,095	-				-0.0
36,096	-				-0.2
36,096	-				+2.0
36,096	-				+0.4
36,096	-				+0.1
36,096	-				-0.7
36,096	-				+0.6
36,096	-				+0.8
36,096	-				+0.1
36,096	-				-0.5
36,096	-				-1.2
36,096	-				-0.8
36,096	-				+0.5
36,096	-				-0.9
36,096	-				-1.1
36,096	-				-0.3
36,096	-				+0.2
36,096	-				-0.2
36,096	-				+0.1
36,096	-				+1.1
36,096	-				-1.4
36,098	-				+1.3
36,098	-				-1.5
36,102	+				+0.0
36,106	+				-1.0
36,115	-		SOA0048	0.10	+0.1
36,116	+		SOA0048	0.10	+1.0
36,116	+		SOA0048	0.10	-0.5
36,116	+		SOA0048	0.10	-0.2
36,116	+		SOA0048	0.10	+0.3
36,116	+		SOA0048	0.10	+0.4
36,116	+		SOA0048	0.10	-0.0
36,116	+		SOA0048	0.10	-0.1
36,116	-		SOA0048	0.10	-0.1
36,118	+		SOA0048	0.10	+1.3
36,119	-		SOA0048	0.11	+0.7
36,123	+		SOA0048	0.11	+2.6
36,123	+		SOA0048	0.11	+0.7
36,123	+		SOA0048	0.11	+0.4
36,123	+		SOA0048	0.11	-0.3
36,123	+		SOA0048	0.11	-1.3
36,123	+		SOA0048	0.11	-0.1
36,123	+		SOA0048	0.11	-0.7
36,123	+		SOA0048	0.11	-1.5
36,123	+		SOA0048	0.11	-0.5
36,124	+		SOA0048	0.11	+0.0
36,124	+		SOA0048	0.11	+0.8
36,124	+		SOA0048	0.11	-0.3
36,124	+		SOA0048	0.11	+0.1
36,124	+		SOA0048	0.11	+0.7
36,124	+		SOA0048	0.11	-0.3
36,124	+		SOA0048	0.11	-0.2
36,124	+		SOA0048	0.11	+1.2
36,124	+		SOA0048	0.11	-0.4
36,124	+		SOA0048	0.11	+1.6
36,124	+		SOA0048	0.11	+0.3
36,124	+		SOA0048	0.11	+0.3
36,124	+		SOA0048	0.11	+0.1
36,124	+		SOA0048	0.11	-0.4
36,124	+		SOA0048	0.11	+0.3
36,124	+		SOA0048	0.11	-0.1
36,124	+		SOA0048	0.11	+0.0
36,124	+		SOA0048	0.11	-1.5
36,124	+		SOA0048	0.11	+0.3
36,124	+		SOA0048	0.11	-0.8
36,124	-		SOA0048	0.11	-0.0
36,124	-		SOA0048	0.11	-1.1
36,124	-		SOA0048	0.11	-0.5
36,124	-		SOA0048	0.11	-0.4
36,124	-		SOA0048	0.11	+0.9
36,124	-		SOA0048	0.11	-0.2
36,124	-		SOA0048	0.11	+0.9
36,124	-				+0.3
36,124	-		SOA0048	0.11	-0.8
36,124	-		SOA0048	0.11	-0.8
36,131	+		SOA0048	0.11	+0.9
36,131	-		SOA0048	0.11	-0.4
36,131	-		SOA0048	0.11	-0.7
36,131	-		SOA0048	0.11	-1.3
36,131	-		SOA0048	0.11	+0.0
36,131	-		SOA0048	0.11	+0.5
36,131	-		SOA0048	0.11	-0.1
36,132	-		SOA0048	0.11	+0.4
36,132	-		SOA0048	0.11	+0.3
36,132	-		SOA0048	0.11	+0.6
36,132	-		SOA0048	0.11	+1.3
36,132	-		SOA0048	0.11	+0.3
36,132	-		SOA0048	0.11	-0.1
36,132	-		SOA0048	0.11	+1.3
36,132	-		SOA0048	0.11	+0.1
36,132	-		SOA0048	0.11	+0.4
36,132	-		SOA0048	0.11	+0.6
36,132	-		SOA0048	0.11	+1.5
36,132	-		SOA0048	0.11	-0.3
36,132	-		SOA0048	0.11	-0.1
36,132	-		SOA0048	0.11	+0.5
36,132	-		SOA0048	0.11	+0.9
36,132	-		SOA0048	0.11	+0.3
36,132	-		SOA0048	0.11	+0.5
36,132	-		SOA0048	0.11	+0.9
36,132	-		SOA0048	0.11	+0.3
36,132	-		SOA0048	0.11	+0.1
36,132	-		SOA0048	0.11	-0.4
36,132	-		SOA0048	0.11	+2.0
36,132	-		SOA0048	0.11	-0.3
36,140	-		SOA0048	0.12	-3.0
36,147	-		SOA0048	0.12	-0.3
36,153	+		SOA0048	0.12	-1.4
36,154	-		SOA0048	0.12	-1.3
36,171	+		SOA0048	0.13	-0.8
36,172	+		SOA0048	0.13	+2.3
36,172	+		SOA0048	0.13	-0.0
36,179	-		SOA0048	0.14	-0.2
36,179	-		SOA0048	0.14	+1.1
36,180	-		SOA0048	0.14	+0.3
36,204	+		SOA0048	0.15	-1.1
36,205	+		SOA0048	0.15	+0.2
36,205	+		SOA0048	0.15	+0.7
36,205	+		SOA0048	0.15	-1.3
36,205	+		SOA0048	0.15	-0.0
36,205	+		SOA0048	0.15	+0.6
36,205	+		SOA0048	0.15	+0.4
36,211	+		SOA0048	0.15	+0.4
36,213	-		SOA0048	0.15	-0.2
36,213	-		SOA0048	0.15	-0.7
36,213	-		SOA0048	0.15	+0.3
36,213	-		SOA0048	0.15	-2.0
36,216	+		SOA0048	0.16	-0.3
36,224	+		SOA0048	0.16	+0.3
36,224	+		SOA0048	0.16	+0.3
36,224	+		SOA0048	0.16	-0.1
36,232	-		SOA0048	0.16	-0.0
36,232	-		SOA0048	0.16	+0.3
36,232	-		SOA0048	0.16	+0.3
36,234	-		SOA0048	0.16	-0.1
36,249	-		SOA0048	0.17	+0.1
36,259	-		SOA0048	0.18	-0.4
36,267	-		SOA0048	0.18	+0.9
36,269	+		SOA0048	0.18	-0.4
36,270	+		SOA0048	0.18	-0.1
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37,580	-		SOA0048	0.86	-2.3
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37,580	-		SOA0048	0.86	+0.3
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37,608	-		SOA0048	0.88	+0.0
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38,489	+		SO_A0177	0.79	-5.8
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38,497	-		SO_A0177	0.83	-3.9
38,498	-		SO_A0177	0.84	-3.0
38,498	-		SO_A0177	0.84	-0.7
38,498	-		SO_A0177	0.84	-1.3
38,500	+		SO_A0177	0.85	-5.0
38,515	+				-2.5
38,545	+				-1.3
38,562	+				-4.9
38,562	+				-4.3
38,562	+				-3.3
38,562	+				-0.7
38,562	+				-3.1
38,562	+				-3.6
38,562	+				-3.6
38,562	+				-2.7
38,570	-		SO_A0178	0.13	-1.7
38,570	-		SO_A0178	0.13	-1.1
38,570	-		SO_A0178	0.13	-3.5
38,570	-		SO_A0178	0.13	-2.2
38,570	-		SO_A0178	0.13	-2.3
38,570	-		SO_A0178	0.13	-2.9
38,570	-		SO_A0178	0.13	-2.0
38,570	-		SO_A0178	0.13	-2.6
38,570	-		SO_A0178	0.13	-1.4
38,570	-		SO_A0178	0.13	-2.3
38,570	-		SO_A0178	0.13	-2.1
38,570	-		SO_A0178	0.13	-1.7
38,584	+		SO_A0178	0.20	-4.9
38,589	-		SO_A0178	0.22	-0.0
38,592	-		SO_A0178	0.24	-0.3
38,602	-		SO_A0178	0.29	-1.8
38,603	-		SO_A0178	0.29	-2.1
38,603	-		SO_A0178	0.29	-3.8
38,617	+		SO_A0178	0.36	-3.7
38,617	+		SO_A0178	0.36	-3.0
38,618	+		SO_A0178	0.36	-2.3
38,619	+		SO_A0178	0.37	-6.0
38,630	+		SO_A0178	0.42	-0.0
38,630	+		SO_A0178	0.42	+0.5
38,632	-		SO_A0178	0.43	-2.0
38,637	-		SO_A0178	0.45	-0.7
38,638	-		SO_A0178	0.46	-1.3
38,649	+		SO_A0178	0.51	-2.7
38,649	+		SO_A0178	0.51	-0.7
38,660	+		SO_A0178	0.56	-0.7
38,660	+				+0.3
38,660	+		SO_A0178	0.56	-1.3
38,662	+		SO_A0178	0.57	-5.3
38,665	+		SO_A0178	0.59	-3.1
38,668	-		SO_A0178	0.60	-1.7
38,668	-		SO_A0178	0.60	-0.7
38,670	-		SO_A0178	0.61	-0.1
38,670	-		SO_A0178	0.61	+1.1
38,673	-		SO_A0178	0.62	-0.3
38,673	-		SO_A0178	0.62	-0.7
38,678	-		SO_A0178	0.65	-2.3
38,680	+		SO_A0178	0.66	-2.3
38,683	-		SO_A0178	0.67	-1.1
38,688	+		SO_A0178	0.70	-2.9
38,688	+		SO_A0178	0.70	-2.5
38,688	+		SO_A0178	0.70	-4.3
38,688	+		SO_A0178	0.70	-2.9
38,688	+		SO_A0178	0.70	-4.5
38,688	+		SO_A0178	0.70	-2.9
38,691	-		SO_A0178	0.71	+0.1
38,696	-		SO_A0178	0.73	-3.7
38,696	-		SO_A0178	0.73	-1.3
38,696	-		SO_A0178	0.73	-2.0
38,696	-		SO_A0178	0.73	-2.7
38,696	-		SO_A0178	0.73	-3.1
38,696	-		SO_A0178	0.73	-2.1
38,696	-		SO_A0178	0.73	-2.0
38,696	-		SO_A0178	0.73	-4.1
38,696	-		SO_A0178	0.73	-2.4
38,700	+		SO_A0178	0.75	-2.3
38,703	-		SO_A0178	0.77	-0.2
38,704	-		SO_A0178	0.77	-1.1
38,708	-		SO_A0178	0.79	-1.7
38,708	-		SO_A0178	0.79	-3.1
38,711	+		SO_A0178	0.80	-4.0
38,711	+				+1.3
38,719	-		SO_A0178	0.84	-2.3
38,719	-		SO_A0178	0.84	-1.3
38,719	-		SO_A0178	0.84	-2.9
38,719	-		SO_A0178	0.84	-0.6
38,719	-		SO_A0178	0.84	-0.5
38,719	-		SO_A0178	0.84	-0.9
38,719	-		SO_A0178	0.84	-3.5
38,721	+		SO_A0178	0.85	-3.1
38,721	+		SO_A0178	0.85	-1.3
38,729	-		SO_A0178	0.89	-2.0
38,780	+				-4.6
38,816	-				-3.0
38,836	+				-2.9