Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and SO0443 are separated by 335 nucleotides SO0443 and SO0444 overlap by 1 nucleotides
SO0442: purH - phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI ptt file), at 469,791 to 471,422
purH
SO0443: SO0443 - transcriptional regulator, MerR family (NCBI ptt file), at 471,758 to 472,249
SO0443
SO0444: SO0444 - hypothetical protein (NCBI ptt file), at 472,249 to 473,724
SO0444
Position (kb) 471
472
473 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 470.786 kb on + strand, within purH at 470.852 kb on - strand, within purH at 470.878 kb on - strand, within purH at 470.979 kb on + strand, within purH at 471.053 kb on + strand, within purH at 471.094 kb on + strand, within purH at 471.094 kb on + strand, within purH at 471.094 kb on + strand, within purH at 471.102 kb on - strand, within purH at 471.171 kb on + strand, within purH at 471.179 kb on - strand, within purH at 471.213 kb on - strand, within purH at 471.236 kb on + strand, within purH at 471.239 kb on + strand, within purH at 471.244 kb on - strand, within purH at 471.244 kb on - strand, within purH at 471.263 kb on + strand at 471.285 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.314 kb on + strand at 471.383 kb on - strand at 471.420 kb on + strand at 471.612 kb on + strand at 471.676 kb on + strand at 471.715 kb on + strand at 471.742 kb on + strand at 471.757 kb on - strand at 471.757 kb on - strand at 471.757 kb on - strand at 471.801 kb on - strand at 471.879 kb on - strand, within SO0443 at 471.879 kb on - strand, within SO0443 at 471.891 kb on + strand, within SO0443 at 471.993 kb on + strand, within SO0443 at 472.006 kb on + strand, within SO0443 at 472.014 kb on - strand, within SO0443 at 472.017 kb on + strand, within SO0443 at 472.286 kb on - strand at 472.383 kb on + strand at 472.391 kb on - strand at 472.456 kb on - strand, within SO0444 at 472.621 kb on + strand, within SO0444 at 472.657 kb on + strand, within SO0444 at 472.698 kb on - strand, within SO0444 at 472.701 kb on + strand, within SO0444 at 472.709 kb on - strand, within SO0444 at 472.711 kb on + strand, within SO0444 at 472.777 kb on + strand, within SO0444 at 472.785 kb on - strand, within SO0444 at 472.963 kb on + strand, within SO0444 at 472.964 kb on + strand, within SO0444 at 472.965 kb on + strand, within SO0444 at 472.983 kb on - strand, within SO0444 at 473.001 kb on - strand, within SO0444 at 473.088 kb on + strand, within SO0444 at 473.202 kb on - strand, within SO0444 at 473.207 kb on + strand, within SO0444
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 470,786 + purH SO0442 0.61 -2.0 470,852 - purH SO0442 0.65 -1.4 470,878 - purH SO0442 0.67 -4.3 470,979 + purH SO0442 0.73 -5.2 471,053 + purH SO0442 0.77 -3.3 471,094 + purH SO0442 0.80 -3.2 471,094 + purH SO0442 0.80 -4.0 471,094 + purH SO0442 0.80 -3.8 471,102 - purH SO0442 0.80 -4.0 471,171 + purH SO0442 0.85 -1.8 471,179 - purH SO0442 0.85 -3.3 471,213 - purH SO0442 0.87 -3.8 471,236 + purH SO0442 0.89 -4.3 471,239 + purH SO0442 0.89 -2.9 471,244 - purH SO0442 0.89 -3.8 471,244 - purH SO0442 0.89 -5.0 471,263 + -2.6 471,285 + -4.6 471,314 + -2.0 471,314 + -4.3 471,314 + -2.6 471,314 + -2.4 471,383 - -4.3 471,420 + -4.8 471,612 + -0.2 471,676 + -0.2 471,715 + +0.3 471,742 + +0.1 471,757 - +0.3 471,757 - +0.6 471,757 - +0.5 471,801 - +0.1 471,879 - SO0443 0.25 +0.1 471,879 - SO0443 0.25 +0.7 471,891 + SO0443 0.27 +0.6 471,993 + SO0443 0.48 -0.6 472,006 + SO0443 0.50 -0.8 472,014 - SO0443 0.52 +0.2 472,017 + SO0443 0.53 +0.7 472,286 - +1.1 472,383 + +0.6 472,391 - -2.0 472,456 - SO0444 0.14 +0.2 472,621 + SO0444 0.25 -0.4 472,657 + SO0444 0.28 -0.4 472,698 - SO0444 0.30 +0.2 472,701 + SO0444 0.31 +0.9 472,709 - SO0444 0.31 -0.0 472,711 + SO0444 0.31 +0.2 472,777 + SO0444 0.36 +0.3 472,785 - SO0444 0.36 +0.7 472,963 + SO0444 0.48 -0.2 472,964 + SO0444 0.48 +0.8 472,965 + SO0444 0.49 +0.2 472,983 - SO0444 0.50 +1.0 473,001 - SO0444 0.51 -0.1 473,088 + SO0444 0.57 +2.1 473,202 - SO0444 0.65 -0.5 473,207 + SO0444 0.65 +0.6
Or see this region's nucleotide sequence