Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0427 and SO0428 are separated by 230 nucleotides SO0428 and SO0429 are separated by 221 nucleotides
SO0427: SO0427 - sensory box protein (NCBI ptt file), at 444,828 to 449,303
SO0427
SO0428: SO0428 - conserved hypothetical protein (NCBI ptt file), at 449,534 to 451,744
SO0428
SO0429: SO0429 - peptidase, M13 family (NCBI ptt file), at 451,966 to 454,008
SO0429
Position (kb) 449
450
451
452 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 448.566 kb on - strand, within SO0427 at 448.631 kb on - strand, within SO0427 at 448.691 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.725 kb on + strand, within SO0427 at 448.727 kb on + strand, within SO0427 at 448.733 kb on + strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.733 kb on - strand, within SO0427 at 448.735 kb on + strand, within SO0427 at 448.740 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.750 kb on + strand, within SO0427 at 448.751 kb on + strand, within SO0427 at 448.758 kb on - strand, within SO0427 at 448.758 kb on - strand, within SO0427 at 448.771 kb on + strand, within SO0427 at 448.807 kb on - strand, within SO0427 at 448.932 kb on + strand at 448.950 kb on - strand at 448.953 kb on + strand at 448.961 kb on - strand at 448.998 kb on + strand at 448.998 kb on + strand at 448.998 kb on + strand at 449.000 kb on + strand at 449.008 kb on - strand at 449.084 kb on - strand at 449.086 kb on + strand at 449.086 kb on + strand at 449.091 kb on + strand at 449.091 kb on + strand at 449.091 kb on + strand at 449.094 kb on - strand at 449.099 kb on - strand at 449.099 kb on - strand at 449.099 kb on - strand at 449.100 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.110 kb on + strand at 449.113 kb on + strand at 449.118 kb on - strand at 449.118 kb on - strand at 449.139 kb on - strand at 449.159 kb on + strand at 449.159 kb on + strand at 449.167 kb on + strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.167 kb on - strand at 449.169 kb on + strand at 449.169 kb on + strand at 449.175 kb on - strand at 449.184 kb on - strand at 449.184 kb on - strand at 449.197 kb on - strand at 449.203 kb on + strand at 449.209 kb on - strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.234 kb on + strand at 449.241 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.242 kb on - strand at 449.263 kb on + strand at 449.284 kb on - strand at 449.319 kb on + strand at 449.324 kb on + strand at 449.327 kb on - strand at 449.328 kb on - strand at 449.344 kb on + strand at 449.352 kb on - strand at 449.352 kb on - strand at 449.358 kb on + strand at 449.373 kb on - strand at 449.434 kb on + strand at 449.469 kb on + strand at 449.469 kb on + strand at 449.477 kb on - strand at 449.567 kb on + strand at 449.575 kb on - strand at 449.607 kb on - strand at 449.615 kb on + strand at 449.623 kb on - strand at 449.632 kb on + strand at 449.640 kb on - strand at 449.640 kb on - strand at 449.645 kb on + strand at 449.667 kb on - strand at 449.678 kb on + strand at 449.747 kb on + strand at 449.789 kb on + strand, within SO0428 at 449.841 kb on - strand, within SO0428 at 449.970 kb on + strand, within SO0428 at 450.078 kb on + strand, within SO0428 at 450.108 kb on + strand, within SO0428 at 450.137 kb on + strand, within SO0428 at 450.191 kb on + strand, within SO0428 at 450.201 kb on - strand, within SO0428 at 450.255 kb on - strand, within SO0428 at 450.376 kb on + strand, within SO0428 at 450.376 kb on + strand, within SO0428 at 450.379 kb on - strand, within SO0428 at 450.407 kb on + strand, within SO0428 at 450.415 kb on - strand, within SO0428 at 450.453 kb on - strand, within SO0428 at 450.476 kb on + strand, within SO0428 at 450.478 kb on + strand, within SO0428 at 450.479 kb on - strand, within SO0428 at 450.479 kb on - strand, within SO0428 at 450.484 kb on - strand, within SO0428 at 450.484 kb on - strand, within SO0428 at 450.489 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.613 kb on + strand, within SO0428 at 450.621 kb on - strand, within SO0428 at 450.621 kb on - strand, within SO0428 at 450.621 kb on - strand, within SO0428 at 450.705 kb on + strand, within SO0428 at 450.715 kb on + strand, within SO0428 at 450.715 kb on + strand, within SO0428 at 450.723 kb on - strand, within SO0428 at 450.723 kb on - strand, within SO0428 at 450.723 kb on - strand, within SO0428 at 450.726 kb on + strand, within SO0428 at 450.734 kb on - strand, within SO0428 at 450.748 kb on - strand, within SO0428 at 450.805 kb on + strand, within SO0428 at 450.805 kb on + strand, within SO0428 at 450.838 kb on + strand, within SO0428 at 450.838 kb on + strand, within SO0428 at 450.839 kb on + strand, within SO0428 at 450.839 kb on + strand, within SO0428 at 450.846 kb on - strand, within SO0428 at 450.854 kb on + strand, within SO0428 at 451.020 kb on - strand, within SO0428 at 451.050 kb on + strand, within SO0428 at 451.063 kb on - strand, within SO0428 at 451.075 kb on - strand, within SO0428 at 451.075 kb on - strand, within SO0428 at 451.097 kb on - strand, within SO0428 at 451.107 kb on - strand, within SO0428 at 451.145 kb on - strand, within SO0428 at 451.147 kb on - strand, within SO0428 at 451.193 kb on + strand, within SO0428 at 451.210 kb on - strand, within SO0428 at 451.211 kb on - strand, within SO0428 at 451.212 kb on + strand, within SO0428 at 451.220 kb on - strand, within SO0428 at 451.237 kb on + strand, within SO0428 at 451.243 kb on - strand, within SO0428 at 451.245 kb on + strand, within SO0428 at 451.245 kb on - strand, within SO0428 at 451.245 kb on - strand, within SO0428 at 451.253 kb on - strand, within SO0428 at 451.300 kb on + strand, within SO0428 at 451.300 kb on + strand, within SO0428 at 451.302 kb on + strand, within SO0428 at 451.302 kb on + strand, within SO0428 at 451.302 kb on + strand, within SO0428 at 451.309 kb on - strand, within SO0428 at 451.315 kb on + strand, within SO0428 at 451.315 kb on + strand, within SO0428 at 451.315 kb on + strand, within SO0428 at 451.315 kb on + strand, within SO0428 at 451.323 kb on - strand, within SO0428 at 451.323 kb on - strand, within SO0428 at 451.323 kb on - strand, within SO0428 at 451.323 kb on - strand, within SO0428 at 451.323 kb on - strand, within SO0428 at 451.410 kb on + strand, within SO0428 at 451.410 kb on + strand, within SO0428 at 451.463 kb on - strand, within SO0428 at 451.518 kb on - strand, within SO0428 at 451.520 kb on + strand, within SO0428 at 451.520 kb on + strand, within SO0428 at 451.598 kb on - strand at 451.602 kb on + strand at 451.610 kb on - strand at 451.610 kb on - strand at 451.627 kb on - strand at 451.683 kb on + strand at 451.746 kb on + strand at 451.793 kb on - strand at 451.825 kb on - strand at 451.849 kb on - strand at 451.982 kb on - strand at 451.982 kb on - strand at 451.994 kb on + strand at 452.000 kb on - strand at 452.002 kb on - strand at 452.002 kb on - strand at 452.002 kb on - strand at 452.147 kb on + strand at 452.147 kb on + strand at 452.147 kb on + strand at 452.155 kb on - strand at 452.183 kb on + strand, within SO0429 at 452.191 kb on - strand, within SO0429 at 452.191 kb on - strand, within SO0429 at 452.191 kb on - strand, within SO0429 at 452.191 kb on - strand, within SO0429 at 452.333 kb on + strand, within SO0429 at 452.335 kb on - strand, within SO0429 at 452.341 kb on - strand, within SO0429 at 452.341 kb on - strand, within SO0429 at 452.341 kb on - strand, within SO0429 at 452.341 kb on - strand, within SO0429 at 452.351 kb on - strand, within SO0429 at 452.452 kb on - strand, within SO0429 at 452.500 kb on - strand, within SO0429 at 452.506 kb on + strand, within SO0429 at 452.507 kb on + strand, within SO0429 at 452.515 kb on - strand, within SO0429 at 452.534 kb on + strand, within SO0429 at 452.687 kb on + strand, within SO0429 at 452.690 kb on - strand, within SO0429 at 452.740 kb on - strand, within SO0429
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 448,566 - SO0427 0.84 -0.3 448,631 - SO0427 0.85 -0.0 448,691 + SO0427 0.86 +0.1 448,725 + SO0427 0.87 -1.8 448,725 + SO0427 0.87 -0.9 448,725 + SO0427 0.87 -0.0 448,725 + SO0427 0.87 +0.6 448,725 + SO0427 0.87 +0.2 448,725 + SO0427 0.87 -0.1 448,725 + SO0427 0.87 -0.2 448,725 + SO0427 0.87 -0.7 448,725 + SO0427 0.87 +0.0 448,725 + SO0427 0.87 -0.8 448,725 + SO0427 0.87 -0.0 448,725 + SO0427 0.87 +1.4 448,725 + SO0427 0.87 -0.4 448,725 + SO0427 0.87 +1.0 448,725 + SO0427 0.87 +1.3 448,725 + SO0427 0.87 -0.2 448,725 + SO0427 0.87 -0.3 448,725 + SO0427 0.87 -0.0 448,725 + SO0427 0.87 +0.6 448,727 + SO0427 0.87 +0.3 448,733 + SO0427 0.87 +0.0 448,733 - SO0427 0.87 +0.8 448,733 - SO0427 0.87 -0.0 448,733 - SO0427 0.87 -1.0 448,733 - SO0427 0.87 +1.1 448,733 - SO0427 0.87 +0.4 448,733 - SO0427 0.87 +0.6 448,733 - SO0427 0.87 +0.2 448,733 - SO0427 0.87 -0.0 448,735 + SO0427 0.87 -0.4 448,740 + SO0427 0.87 -0.3 448,750 + SO0427 0.88 +0.1 448,750 + SO0427 0.88 +0.1 448,750 + SO0427 0.88 +1.6 448,750 + SO0427 0.88 +0.1 448,750 + SO0427 0.88 +0.8 448,751 + SO0427 0.88 -0.4 448,758 - SO0427 0.88 -0.0 448,758 - SO0427 0.88 +0.0 448,771 + SO0427 0.88 +1.3 448,807 - SO0427 0.89 +0.2 448,932 + +0.6 448,950 - -0.1 448,953 + +0.4 448,961 - -0.4 448,998 + +0.6 448,998 + -1.1 448,998 + +0.9 449,000 + +0.1 449,008 - -0.3 449,084 - -0.1 449,086 + +2.6 449,086 + +0.2 449,091 + +1.1 449,091 + -0.0 449,091 + -0.0 449,094 - +0.3 449,099 - +0.4 449,099 - -0.1 449,099 - -0.3 449,100 + +1.1 449,110 + +1.1 449,110 + +0.3 449,110 + +1.3 449,110 + +0.1 449,113 + +1.4 449,118 - -0.9 449,118 - -0.2 449,139 - +0.6 449,159 + -0.4 449,159 + +0.2 449,167 + -1.0 449,167 - -0.4 449,167 - -0.7 449,167 - -0.5 449,167 - +0.2 449,169 + +0.5 449,169 + +0.7 449,175 - -0.7 449,184 - -1.0 449,184 - +0.1 449,197 - +0.3 449,203 + +0.0 449,209 - +0.2 449,234 + -1.3 449,234 + -0.7 449,234 + +0.7 449,234 + +0.4 449,234 + -0.2 449,234 + +0.1 449,234 + -0.8 449,234 + +1.0 449,234 + +0.1 449,234 + -0.9 449,234 + +1.0 449,234 + +0.6 449,241 - -0.1 449,242 - -0.6 449,242 - -0.2 449,242 - +1.7 449,242 - -1.4 449,242 - -0.4 449,242 - +1.2 449,242 - +0.9 449,242 - +0.2 449,242 - +0.1 449,242 - +0.6 449,242 - +0.3 449,242 - +1.0 449,242 - +0.7 449,242 - -0.3 449,242 - -2.3 449,242 - -0.3 449,242 - -0.0 449,263 + +1.8 449,284 - -0.3 449,319 + +1.1 449,324 + +0.3 449,327 - -1.0 449,328 - +0.4 449,344 + +0.2 449,352 - +1.4 449,352 - -0.2 449,358 + +0.6 449,373 - +1.3 449,434 + -0.2 449,469 + -0.4 449,469 + +0.3 449,477 - -1.3 449,567 + -1.2 449,575 - +0.1 449,607 - -2.4 449,615 + -1.3 449,623 - -1.9 449,632 + -2.1 449,640 - -0.4 449,640 - -2.0 449,645 + -2.0 449,667 - -0.7 449,678 + -1.3 449,747 + -3.0 449,789 + SO0428 0.12 -1.7 449,841 - SO0428 0.14 -2.8 449,970 + SO0428 0.20 -0.9 450,078 + SO0428 0.25 -2.4 450,108 + SO0428 0.26 -2.0 450,137 + SO0428 0.27 -2.4 450,191 + SO0428 0.30 -2.0 450,201 - SO0428 0.30 -1.5 450,255 - SO0428 0.33 -1.0 450,376 + SO0428 0.38 -2.0 450,376 + SO0428 0.38 -3.9 450,379 - SO0428 0.38 -2.3 450,407 + SO0428 0.39 -3.0 450,415 - SO0428 0.40 -1.2 450,453 - SO0428 0.42 -0.4 450,476 + SO0428 0.43 -0.7 450,478 + SO0428 0.43 -3.4 450,479 - SO0428 0.43 -4.2 450,479 - SO0428 0.43 -1.6 450,484 - SO0428 0.43 -4.0 450,484 - SO0428 0.43 -3.6 450,489 + SO0428 0.43 -2.9 450,613 + SO0428 0.49 -3.0 450,613 + SO0428 0.49 -2.8 450,613 + SO0428 0.49 -3.3 450,613 + SO0428 0.49 -2.1 450,613 + SO0428 0.49 -0.9 450,613 + SO0428 0.49 -1.8 450,613 + SO0428 0.49 -2.9 450,613 + SO0428 0.49 -0.8 450,613 + SO0428 0.49 -4.5 450,613 + SO0428 0.49 -3.5 450,613 + SO0428 0.49 -3.9 450,613 + SO0428 0.49 -2.9 450,613 + SO0428 0.49 -3.5 450,621 - SO0428 0.49 -2.4 450,621 - SO0428 0.49 -2.8 450,621 - SO0428 0.49 -2.1 450,705 + SO0428 0.53 -2.8 450,715 + SO0428 0.53 -3.0 450,715 + SO0428 0.53 -1.4 450,723 - SO0428 0.54 -3.4 450,723 - SO0428 0.54 -2.3 450,723 - SO0428 0.54 -3.1 450,726 + SO0428 0.54 -2.6 450,734 - SO0428 0.54 -1.4 450,748 - SO0428 0.55 -3.1 450,805 + SO0428 0.57 -1.0 450,805 + SO0428 0.57 -4.8 450,838 + SO0428 0.59 -1.8 450,838 + SO0428 0.59 +0.6 450,839 + SO0428 0.59 -3.1 450,839 + SO0428 0.59 -4.8 450,846 - SO0428 0.59 -2.7 450,854 + SO0428 0.60 -2.6 451,020 - SO0428 0.67 -3.1 451,050 + SO0428 0.69 -1.4 451,063 - SO0428 0.69 -0.9 451,075 - SO0428 0.70 -3.5 451,075 - SO0428 0.70 -3.0 451,097 - SO0428 0.71 -2.9 451,107 - SO0428 0.71 -2.8 451,145 - SO0428 0.73 -3.7 451,147 - SO0428 0.73 -1.9 451,193 + SO0428 0.75 -3.1 451,210 - SO0428 0.76 -2.8 451,211 - SO0428 0.76 -2.6 451,212 + SO0428 0.76 -3.3 451,220 - SO0428 0.76 -2.3 451,237 + SO0428 0.77 -1.4 451,243 - SO0428 0.77 -2.9 451,245 + SO0428 0.77 -1.9 451,245 - SO0428 0.77 -3.2 451,245 - SO0428 0.77 -2.2 451,253 - SO0428 0.78 -3.8 451,300 + SO0428 0.80 -2.9 451,300 + SO0428 0.80 -3.6 451,302 + SO0428 0.80 -1.8 451,302 + SO0428 0.80 -2.1 451,302 + SO0428 0.80 -2.4 451,309 - SO0428 0.80 -2.0 451,315 + SO0428 0.81 -3.0 451,315 + SO0428 0.81 -2.9 451,315 + SO0428 0.81 -1.0 451,315 + SO0428 0.81 -2.8 451,323 - SO0428 0.81 -0.8 451,323 - SO0428 0.81 -2.3 451,323 - SO0428 0.81 -1.1 451,323 - SO0428 0.81 -1.4 451,323 - SO0428 0.81 -2.3 451,410 + SO0428 0.85 -1.3 451,410 + SO0428 0.85 -2.4 451,463 - SO0428 0.87 -0.7 451,518 - SO0428 0.90 -2.6 451,520 + SO0428 0.90 -1.4 451,520 + SO0428 0.90 -1.4 451,598 - -2.2 451,602 + -1.4 451,610 - -1.4 451,610 - -2.4 451,627 - -2.0 451,683 + -2.3 451,746 + +0.8 451,793 - +0.4 451,825 - +0.4 451,849 - +1.3 451,982 - +0.6 451,982 - -0.4 451,994 + +1.3 452,000 - +0.9 452,002 - +0.2 452,002 - +1.1 452,002 - -0.3 452,147 + -0.5 452,147 + +0.6 452,147 + -1.0 452,155 - +0.4 452,183 + SO0429 0.11 -0.2 452,191 - SO0429 0.11 -1.4 452,191 - SO0429 0.11 +0.2 452,191 - SO0429 0.11 +0.4 452,191 - SO0429 0.11 +0.6 452,333 + SO0429 0.18 +0.3 452,335 - SO0429 0.18 -0.7 452,341 - SO0429 0.18 -0.8 452,341 - SO0429 0.18 +1.1 452,341 - SO0429 0.18 -0.2 452,341 - SO0429 0.18 +0.2 452,351 - SO0429 0.19 +0.9 452,452 - SO0429 0.24 +0.6 452,500 - SO0429 0.26 -0.1 452,506 + SO0429 0.26 +0.2 452,507 + SO0429 0.26 +0.2 452,515 - SO0429 0.27 +0.3 452,534 + SO0429 0.28 +1.0 452,687 + SO0429 0.35 +0.5 452,690 - SO0429 0.35 +1.3 452,740 - SO0429 0.38 -0.2
Or see this region's nucleotide sequence