Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09820

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09810 and PGA1_c09820 are separated by 118 nucleotidesPGA1_c09820 and PGA1_c09830 are separated by 74 nucleotides PGA1_c09810: PGA1_c09810 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 1,011,793 to 1,012,416 _c09810 PGA1_c09820: PGA1_c09820 - Stress-induced morphogen (activity unknown), at 1,012,535 to 1,012,789 _c09820 PGA1_c09830: PGA1_c09830 - hypothetical protein, at 1,012,864 to 1,013,583 _c09830 Position (kb) 1012 1013Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1011.579 kb on - strandat 1011.605 kb on - strandat 1011.607 kb on + strandat 1011.622 kb on + strandat 1011.627 kb on + strandat 1011.627 kb on + strandat 1011.630 kb on - strandat 1011.635 kb on - strandat 1011.640 kb on + strandat 1011.640 kb on + strandat 1011.640 kb on + strandat 1011.653 kb on - strandat 1011.737 kb on + strandat 1011.803 kb on - strandat 1012.464 kb on + strandat 1012.480 kb on + strandat 1012.488 kb on - strandat 1012.523 kb on + strandat 1012.531 kb on - strandat 1012.531 kb on - strandat 1012.531 kb on - strandat 1012.531 kb on - strandat 1012.531 kb on - strandat 1012.531 kb on - strandat 1012.559 kb on - strandat 1012.559 kb on - strandat 1012.672 kb on + strand, within PGA1_c09820at 1012.702 kb on - strand, within PGA1_c09820at 1012.726 kb on + strand, within PGA1_c09820at 1012.734 kb on - strand, within PGA1_c09820at 1012.751 kb on + strand, within PGA1_c09820at 1012.759 kb on - strand, within PGA1_c09820at 1012.805 kb on - strandat 1012.862 kb on + strandat 1012.865 kb on - strandat 1012.931 kb on + strandat 1012.953 kb on + strand, within PGA1_c09830at 1013.051 kb on - strand, within PGA1_c09830at 1013.147 kb on - strand, within PGA1_c09830at 1013.154 kb on + strand, within PGA1_c09830at 1013.162 kb on - strand, within PGA1_c09830at 1013.185 kb on - strand, within PGA1_c09830at 1013.235 kb on - strand, within PGA1_c09830at 1013.267 kb on + strand, within PGA1_c09830at 1013.296 kb on + strand, within PGA1_c09830at 1013.299 kb on - strand, within PGA1_c09830at 1013.304 kb on - strand, within PGA1_c09830at 1013.329 kb on - strand, within PGA1_c09830at 1013.329 kb on - strand, within PGA1_c09830at 1013.368 kb on + strand, within PGA1_c09830at 1013.445 kb on + strand, within PGA1_c09830at 1013.462 kb on + strand, within PGA1_c09830at 1013.470 kb on - strand, within PGA1_c09830at 1013.516 kb on + strandat 1013.525 kb on + strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.533 kb on - strandat 1013.637 kb on - strandat 1013.637 kb on - strandat 1013.646 kb on + strandat 1013.646 kb on + strandat 1013.653 kb on + strandat 1013.654 kb on - strandat 1013.730 kb on - strandat 1013.732 kb on + strandat 1013.734 kb on + strandat 1013.735 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.740 kb on - strandat 1013.742 kb on - strandat 1013.742 kb on - strandat 1013.769 kb on + strandat 1013.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,011,579 - +0.5
1,011,605 - -1.5
1,011,607 + -0.8
1,011,622 + -0.3
1,011,627 + -1.3
1,011,627 + -0.3
1,011,630 - -0.9
1,011,635 - -0.7
1,011,640 + -0.0
1,011,640 + +1.9
1,011,640 + -1.0
1,011,653 - -1.4
1,011,737 + -3.2
1,011,803 - -0.1
1,012,464 + -1.6
1,012,480 + -1.8
1,012,488 - -0.6
1,012,523 + +1.3
1,012,531 - -1.1
1,012,531 - -0.6
1,012,531 - -0.6
1,012,531 - +1.0
1,012,531 - -0.4
1,012,531 - -0.7
1,012,559 - -2.8
1,012,559 - -0.9
1,012,672 + PGA1_c09820 0.54 -1.0
1,012,702 - PGA1_c09820 0.65 +0.2
1,012,726 + PGA1_c09820 0.75 -0.3
1,012,734 - PGA1_c09820 0.78 +0.5
1,012,751 + PGA1_c09820 0.85 -1.9
1,012,759 - PGA1_c09820 0.88 -0.7
1,012,805 - -0.0
1,012,862 + -0.8
1,012,865 - -0.2
1,012,931 + +0.6
1,012,953 + PGA1_c09830 0.12 -1.0
1,013,051 - PGA1_c09830 0.26 -0.3
1,013,147 - PGA1_c09830 0.39 +1.3
1,013,154 + PGA1_c09830 0.40 -0.2
1,013,162 - PGA1_c09830 0.41 +0.4
1,013,185 - PGA1_c09830 0.45 -0.5
1,013,235 - PGA1_c09830 0.52 -0.7
1,013,267 + PGA1_c09830 0.56 +0.2
1,013,296 + PGA1_c09830 0.60 -0.3
1,013,299 - PGA1_c09830 0.60 +0.3
1,013,304 - PGA1_c09830 0.61 -0.1
1,013,329 - PGA1_c09830 0.65 -0.7
1,013,329 - PGA1_c09830 0.65 -2.8
1,013,368 + PGA1_c09830 0.70 -0.0
1,013,445 + PGA1_c09830 0.81 -0.3
1,013,462 + PGA1_c09830 0.83 -0.4
1,013,470 - PGA1_c09830 0.84 -0.6
1,013,516 + -0.0
1,013,525 + -0.2
1,013,533 - +0.1
1,013,533 - -0.3
1,013,533 - -2.6
1,013,533 - -1.8
1,013,533 - -0.1
1,013,533 - +0.3
1,013,637 - +1.3
1,013,637 - -1.5
1,013,646 + -0.3
1,013,646 + +1.3
1,013,653 + -0.8
1,013,654 - +0.3
1,013,730 - -1.6
1,013,732 + +1.0
1,013,734 + +0.6
1,013,735 - -0.8
1,013,740 - -2.0
1,013,740 - -1.2
1,013,740 - +0.1
1,013,740 - -1.8
1,013,742 - -1.8
1,013,742 - +0.5
1,013,769 + -0.2
1,013,784 - -2.9

Or see this region's nucleotide sequence