Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09150 and PGA1_c09160 are separated by 3 nucleotides PGA1_c09160 and PGA1_c09170 overlap by 4 nucleotides PGA1_c09170 and PGA1_c09180 are separated by 105 nucleotides
PGA1_c09150: PGA1_c09150 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA, at 940,496 to 941,794
_c09150
PGA1_c09160: PGA1_c09160 - Uncharacterized protein conserved in bacteria, at 941,798 to 942,418
_c09160
PGA1_c09170: PGA1_c09170 - putative biotin synthesis protein BioC, at 942,415 to 943,203
_c09170
PGA1_c09180: PGA1_c09180 - Protein of unknown function (DUF2478)., at 943,309 to 943,836
_c09180
Position (kb) 941
942
943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 940.921 kb on - strand, within PGA1_c09150 at 941.007 kb on - strand, within PGA1_c09150 at 941.007 kb on - strand, within PGA1_c09150 at 941.125 kb on + strand, within PGA1_c09150 at 941.125 kb on + strand, within PGA1_c09150 at 941.159 kb on + strand, within PGA1_c09150 at 941.159 kb on + strand, within PGA1_c09150 at 941.164 kb on + strand, within PGA1_c09150 at 941.410 kb on - strand, within PGA1_c09150 at 941.427 kb on + strand, within PGA1_c09150 at 941.472 kb on - strand, within PGA1_c09150 at 941.482 kb on + strand, within PGA1_c09150 at 941.484 kb on - strand, within PGA1_c09150 at 941.504 kb on + strand, within PGA1_c09150 at 941.512 kb on - strand, within PGA1_c09150 at 941.525 kb on + strand, within PGA1_c09150 at 941.525 kb on + strand, within PGA1_c09150 at 941.528 kb on - strand, within PGA1_c09150 at 941.545 kb on + strand, within PGA1_c09150 at 941.545 kb on + strand, within PGA1_c09150 at 941.553 kb on - strand, within PGA1_c09150 at 941.559 kb on - strand, within PGA1_c09150 at 941.610 kb on + strand, within PGA1_c09150 at 941.618 kb on - strand, within PGA1_c09150 at 941.618 kb on - strand, within PGA1_c09150 at 941.707 kb on + strand at 941.715 kb on - strand at 941.715 kb on - strand at 941.758 kb on - strand at 941.788 kb on + strand at 941.814 kb on - strand at 941.820 kb on - strand at 941.825 kb on - strand at 941.931 kb on + strand, within PGA1_c09160 at 941.986 kb on - strand, within PGA1_c09160 at 942.013 kb on - strand, within PGA1_c09160 at 942.077 kb on - strand, within PGA1_c09160 at 942.077 kb on - strand, within PGA1_c09160 at 942.115 kb on + strand, within PGA1_c09160 at 942.130 kb on - strand, within PGA1_c09160 at 942.242 kb on - strand, within PGA1_c09160 at 942.249 kb on + strand, within PGA1_c09160 at 942.277 kb on + strand, within PGA1_c09160 at 942.277 kb on + strand, within PGA1_c09160 at 942.277 kb on + strand, within PGA1_c09160 at 942.285 kb on - strand, within PGA1_c09160 at 942.285 kb on - strand, within PGA1_c09160 at 942.285 kb on - strand, within PGA1_c09160 at 942.358 kb on + strand at 942.396 kb on + strand at 942.409 kb on + strand at 942.428 kb on - strand at 942.438 kb on - strand at 942.483 kb on - strand at 942.755 kb on - strand, within PGA1_c09170 at 942.756 kb on + strand, within PGA1_c09170 at 942.764 kb on + strand, within PGA1_c09170 at 942.846 kb on + strand, within PGA1_c09170 at 942.854 kb on - strand, within PGA1_c09170 at 942.860 kb on + strand, within PGA1_c09170 at 942.860 kb on + strand, within PGA1_c09170 at 942.868 kb on - strand, within PGA1_c09170 at 942.922 kb on - strand, within PGA1_c09170 at 942.943 kb on + strand, within PGA1_c09170 at 942.977 kb on + strand, within PGA1_c09170 at 943.009 kb on + strand, within PGA1_c09170 at 943.039 kb on + strand, within PGA1_c09170 at 943.047 kb on - strand, within PGA1_c09170 at 943.095 kb on - strand, within PGA1_c09170 at 943.166 kb on + strand at 943.167 kb on - strand at 943.174 kb on - strand at 943.202 kb on + strand at 943.214 kb on + strand at 943.262 kb on + strand at 943.317 kb on + strand at 943.325 kb on - strand at 943.325 kb on - strand at 943.388 kb on - strand, within PGA1_c09180
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 940,921 - PGA1_c09150 0.33 -1.4 941,007 - PGA1_c09150 0.39 -1.9 941,007 - PGA1_c09150 0.39 -0.6 941,125 + PGA1_c09150 0.48 +0.3 941,125 + PGA1_c09150 0.48 -0.0 941,159 + PGA1_c09150 0.51 -1.4 941,159 + PGA1_c09150 0.51 +0.6 941,164 + PGA1_c09150 0.51 -1.2 941,410 - PGA1_c09150 0.70 -0.4 941,427 + PGA1_c09150 0.72 -1.7 941,472 - PGA1_c09150 0.75 -0.7 941,482 + PGA1_c09150 0.76 -3.9 941,484 - PGA1_c09150 0.76 +1.6 941,504 + PGA1_c09150 0.78 -0.8 941,512 - PGA1_c09150 0.78 -0.4 941,525 + PGA1_c09150 0.79 -0.4 941,525 + PGA1_c09150 0.79 +0.1 941,528 - PGA1_c09150 0.79 -0.1 941,545 + PGA1_c09150 0.81 -0.9 941,545 + PGA1_c09150 0.81 -0.8 941,553 - PGA1_c09150 0.81 +1.0 941,559 - PGA1_c09150 0.82 +0.1 941,610 + PGA1_c09150 0.86 +0.3 941,618 - PGA1_c09150 0.86 -1.0 941,618 - PGA1_c09150 0.86 -0.3 941,707 + -2.1 941,715 - -0.3 941,715 - -0.9 941,758 - -2.3 941,788 + -0.5 941,814 - +0.4 941,820 - -0.2 941,825 - +0.6 941,931 + PGA1_c09160 0.21 -0.0 941,986 - PGA1_c09160 0.30 -0.6 942,013 - PGA1_c09160 0.35 -1.5 942,077 - PGA1_c09160 0.45 +1.3 942,077 - PGA1_c09160 0.45 +0.4 942,115 + PGA1_c09160 0.51 -0.7 942,130 - PGA1_c09160 0.53 -0.4 942,242 - PGA1_c09160 0.71 -0.8 942,249 + PGA1_c09160 0.73 -1.5 942,277 + PGA1_c09160 0.77 -0.3 942,277 + PGA1_c09160 0.77 -0.0 942,277 + PGA1_c09160 0.77 -1.5 942,285 - PGA1_c09160 0.78 +0.2 942,285 - PGA1_c09160 0.78 -2.3 942,285 - PGA1_c09160 0.78 -0.7 942,358 + -0.0 942,396 + -1.2 942,409 + +0.4 942,428 - +0.5 942,438 - -0.0 942,483 - +1.2 942,755 - PGA1_c09170 0.43 +0.4 942,756 + PGA1_c09170 0.43 -1.6 942,764 + PGA1_c09170 0.44 -2.9 942,846 + PGA1_c09170 0.55 +0.6 942,854 - PGA1_c09170 0.56 -0.1 942,860 + PGA1_c09170 0.56 -2.1 942,860 + PGA1_c09170 0.56 -2.4 942,868 - PGA1_c09170 0.57 -0.6 942,922 - PGA1_c09170 0.64 -0.9 942,943 + PGA1_c09170 0.67 +0.3 942,977 + PGA1_c09170 0.71 -1.7 943,009 + PGA1_c09170 0.75 -2.4 943,039 + PGA1_c09170 0.79 -2.1 943,047 - PGA1_c09170 0.80 +0.3 943,095 - PGA1_c09170 0.86 -2.8 943,166 + +1.8 943,167 - +1.0 943,174 - -0.7 943,202 + +0.1 943,214 + -1.2 943,262 + +0.6 943,317 + -1.0 943,325 - +2.6 943,325 - +0.3 943,388 - PGA1_c09180 0.15 -1.0
Or see this region's nucleotide sequence