Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01570 and PGA1_262p01580 are separated by 180 nucleotides PGA1_262p01580 and PGA1_262p01590 are separated by 28 nucleotides PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides
PGA1_262p01570: PGA1_262p01570 - Domain of unknown function., at 173,441 to 175,663
_262p01570
PGA1_262p01580: PGA1_262p01580 - putative metal ion uptake regulator, at 175,844 to 176,230
_262p01580
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
Position (kb) 176
177 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.295 kb on + strand, within PGA1_262p01570 at 175.295 kb on + strand, within PGA1_262p01570 at 175.301 kb on + strand, within PGA1_262p01570 at 175.306 kb on + strand, within PGA1_262p01570 at 175.560 kb on + strand at 175.583 kb on - strand at 175.732 kb on + strand at 175.828 kb on + strand at 175.857 kb on + strand at 175.885 kb on - strand, within PGA1_262p01580 at 176.150 kb on + strand, within PGA1_262p01580 at 176.308 kb on - strand at 176.309 kb on + strand at 176.425 kb on + strand, within PGA1_262p01590 at 176.425 kb on + strand, within PGA1_262p01590 at 176.494 kb on - strand, within PGA1_262p01590 at 176.514 kb on + strand, within PGA1_262p01590 at 176.539 kb on - strand, within PGA1_262p01590 at 176.544 kb on - strand, within PGA1_262p01590 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 175,295 + PGA1_262p01570 0.83 -1.1 175,295 + PGA1_262p01570 0.83 -0.7 175,301 + PGA1_262p01570 0.84 +0.5 175,306 + PGA1_262p01570 0.84 -1.8 175,560 + +0.6 175,583 - -0.7 175,732 + -2.1 175,828 + -0.2 175,857 + -1.6 175,885 - PGA1_262p01580 0.11 +0.4 176,150 + PGA1_262p01580 0.79 +0.8 176,308 - -0.2 176,309 + -0.4 176,425 + PGA1_262p01590 0.25 -1.1 176,425 + PGA1_262p01590 0.25 -1.5 176,494 - PGA1_262p01590 0.35 +0.4 176,514 + PGA1_262p01590 0.38 -0.8 176,539 - PGA1_262p01590 0.42 -2.2 176,544 - PGA1_262p01590 0.42 -2.0 176,640 - PGA1_262p01590 0.57 -2.2 176,777 - PGA1_262p01590 0.77 -0.3 176,851 + PGA1_262p01590 0.88 -0.8 176,937 - -2.7 176,939 - -1.2 177,189 + PGA1_262p01600 0.36 +0.9 177,376 + PGA1_262p01600 0.63 -0.2 177,430 - PGA1_262p01600 0.71 -2.8 177,461 - PGA1_262p01600 0.75 +0.1 177,527 - PGA1_262p01600 0.85 +0.6 177,667 + +0.3 177,681 + +1.8 177,747 + -1.1 177,805 + PGA1_262p01610 0.14 +2.9 177,810 + PGA1_262p01610 0.14 +1.3 177,810 + PGA1_262p01610 0.14 +0.5 177,818 - PGA1_262p01610 0.15 -0.2 177,826 + PGA1_262p01610 0.16 -0.0 177,834 - PGA1_262p01610 0.16 +1.5 177,834 - PGA1_262p01610 0.16 -1.7 177,869 + PGA1_262p01610 0.19 +2.8
Or see this region's nucleotide sequence