Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27280

Experiment: D,L-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Lactate (C)
2,841,262	-		PGA1_c27270	0.38	-0.7
2,841,421	+		PGA1_c27270	0.50	+2.1
2,841,499	+		PGA1_c27270	0.55	+0.7
2,841,499	+		PGA1_c27270	0.55	+0.9
2,841,507	-		PGA1_c27270	0.56	+0.5
2,841,507	-		PGA1_c27270	0.56	-0.0
2,841,507	-		PGA1_c27270	0.56	-0.5
2,841,542	+		PGA1_c27270	0.58	+0.7
2,841,589	-		PGA1_c27270	0.62	+0.3
2,841,606	+		PGA1_c27270	0.63	+1.0
2,841,608	-		PGA1_c27270	0.63	-0.7
2,841,642	+		PGA1_c27270	0.65	+0.1
2,841,777	+		PGA1_c27270	0.75	-0.5
2,841,822	-		PGA1_c27270	0.78	+0.5
2,841,824	+		PGA1_c27270	0.78	+0.7
2,841,824	+		PGA1_c27270	0.78	-0.6
2,841,865	-		PGA1_c27270	0.81	-0.6
2,841,865	-		PGA1_c27270	0.81	+0.8
2,841,901	+		PGA1_c27270	0.84	+1.6
2,841,922	+		PGA1_c27270	0.85	-0.5
2,841,927	+		PGA1_c27270	0.86	+0.1
2,841,985	-				+1.4
2,842,127	+				+0.7
2,842,131	+				-1.5
2,842,170	+				-0.6
2,842,172	+				-0.3
2,842,180	+				+0.5
2,842,180	-				-1.1
2,842,180	-				-0.5
2,842,180	-				-1.5
2,842,180	-				-0.9
2,842,180	-				-1.3
2,842,180	-				-1.0
2,842,180	-				-0.6
2,842,180	-				+0.5
2,842,180	-				-1.5
2,842,180	-				-0.5
2,842,195	+				+0.8
2,842,195	+				+0.1
2,842,196	-				-2.2
2,842,203	-				+0.8
2,842,216	+				+0.1
2,842,224	-				-0.4
2,842,244	+				-1.5
2,842,251	+				-1.8
2,842,251	+				-0.4
2,842,259	-				+0.7
2,842,259	-				+0.2
2,842,259	-				-1.9
2,842,259	-				-0.5
2,842,259	-				+0.9
2,842,259	-				-0.7
2,842,259	-				-1.1
2,842,284	+				-0.5
2,842,292	-				-0.9
2,842,315	+				+0.7
2,842,318	-				+1.0
2,842,323	-				-0.0
2,842,324	-				+1.5
2,842,330	-				-0.1
2,842,332	+				-1.2
2,842,339	+				-0.5
2,842,340	-				+0.8
2,842,409	+				-2.1
2,842,409	+				+0.6
2,842,409	+				-0.8
2,842,417	-				+0.1
2,842,425	+		PGA1_c27280	0.10	-0.7
2,842,434	-		PGA1_c27280	0.11	+1.5
2,842,448	-		PGA1_c27280	0.11	-1.1
2,842,465	+		PGA1_c27280	0.12	-2.3
2,842,538	+		PGA1_c27280	0.16	-1.3
2,842,563	-		PGA1_c27280	0.17	+0.1
2,842,567	-		PGA1_c27280	0.18	-0.7
2,842,627	-		PGA1_c27280	0.21	+0.3
2,842,627	-		PGA1_c27280	0.21	+0.8
2,842,689	+		PGA1_c27280	0.24	-2.2
2,842,697	-		PGA1_c27280	0.25	-1.7
2,842,708	-		PGA1_c27280	0.25	-0.1
2,842,708	-		PGA1_c27280	0.25	+0.8
2,842,739	-		PGA1_c27280	0.27	-2.8
2,842,867	-		PGA1_c27280	0.34	-0.2
2,842,872	-		PGA1_c27280	0.34	+0.1
2,843,041	-		PGA1_c27280	0.43	+0.1
2,843,041	-		PGA1_c27280	0.43	+0.3
2,843,043	+		PGA1_c27280	0.43	-0.7
2,843,055	+		PGA1_c27280	0.44	-0.5
2,843,055	+		PGA1_c27280	0.44	-0.2
2,843,055	+		PGA1_c27280	0.44	+1.1
2,843,055	+		PGA1_c27280	0.44	+1.4
2,843,063	-		PGA1_c27280	0.44	-0.6
2,843,063	-		PGA1_c27280	0.44	-1.2
2,843,063	-		PGA1_c27280	0.44	-0.0
2,843,063	-		PGA1_c27280	0.44	+0.1
2,843,063	-		PGA1_c27280	0.44	-0.9
2,843,073	-		PGA1_c27280	0.45	-1.7
2,843,150	+		PGA1_c27280	0.49	-1.2
2,843,200	-		PGA1_c27280	0.51	+0.9
2,843,284	+		PGA1_c27280	0.56	-0.7
2,843,326	-		PGA1_c27280	0.58	-1.3
2,843,335	-		PGA1_c27280	0.59	-1.3
2,843,396	+		PGA1_c27280	0.62	+0.7
2,843,445	+		PGA1_c27280	0.64	+0.8
2,843,462	-		PGA1_c27280	0.65	-0.7
2,843,473	-		PGA1_c27280	0.66	+0.9
2,843,582	-		PGA1_c27280	0.72	-0.9
2,843,592	-		PGA1_c27280	0.72	+0.1
2,843,623	+		PGA1_c27280	0.74	+0.6
2,843,704	+		PGA1_c27280	0.78	+0.7
2,843,707	-		PGA1_c27280	0.78	-1.4
2,843,707	-		PGA1_c27280	0.78	+0.0
2,843,712	+		PGA1_c27280	0.79	-1.7
2,843,712	-		PGA1_c27280	0.79	+2.1
2,843,712	-		PGA1_c27280	0.79	+0.2
2,843,712	-		PGA1_c27280	0.79	-1.2
2,843,712	-		PGA1_c27280	0.79	-0.0
2,843,712	-		PGA1_c27280	0.79	-1.2
2,843,717	-		PGA1_c27280	0.79	+1.1
2,843,719	+		PGA1_c27280	0.79	-0.8
2,843,727	-		PGA1_c27280	0.79	-2.7
2,843,750	-		PGA1_c27280	0.81	+1.3
2,843,750	-		PGA1_c27280	0.81	-1.7
2,843,750	-		PGA1_c27280	0.81	-0.0
2,843,785	+		PGA1_c27280	0.82	-0.5
2,843,793	-		PGA1_c27280	0.83	+1.3
2,843,872	+		PGA1_c27280	0.87	+1.1
2,843,900	+		PGA1_c27280	0.89	+0.1
2,843,928	-				-1.8
2,843,993	+				-1.5
2,844,017	+				+0.5
2,844,041	+				-0.5
2,844,049	+				+0.3
2,844,061	-				-1.6
2,844,066	-				+1.6
2,844,068	-				-1.1
2,844,071	-				-2.4
2,844,093	+				-0.0
2,844,121	-				-0.0
2,844,167	-		PGA1_c27290	0.13	+0.1
2,844,249	-		PGA1_c27290	0.32	-1.5
2,844,327	-		PGA1_c27290	0.50	+0.2
2,844,397	+		PGA1_c27290	0.66	+0.1
2,844,397	+		PGA1_c27290	0.66	-1.2
2,844,397	+		PGA1_c27290	0.66	-0.5
2,844,405	-		PGA1_c27290	0.68	+0.7
2,844,439	+		PGA1_c27290	0.76	-0.1
2,844,469	+		PGA1_c27290	0.83	+0.7
2,844,477	-		PGA1_c27290	0.85	+0.5
2,844,492	-		PGA1_c27290	0.88	+1.0
2,844,492	-		PGA1_c27290	0.88	+0.5
2,844,571	-				-0.9
2,844,652	+				+1.1
2,844,655	-				+0.3
2,844,699	+				+1.1
2,844,717	-				+0.0
2,844,725	-				+1.1
2,844,758	+				+0.3
2,844,834	-				+0.1
2,844,860	+		PGA1_c27300	0.12	+0.7
2,844,897	-		PGA1_c27300	0.16	-1.7
2,844,926	-		PGA1_c27300	0.19	+0.1
2,844,949	-		PGA1_c27300	0.22	+0.6
2,844,951	+		PGA1_c27300	0.22	+0.4
2,844,951	+		PGA1_c27300	0.22	-0.7
2,844,957	-		PGA1_c27300	0.23	+0.1
2,844,959	+		PGA1_c27300	0.23	-0.3
2,844,959	+		PGA1_c27300	0.23	-0.2
2,844,959	+		PGA1_c27300	0.23	+0.3
2,844,965	-		PGA1_c27300	0.24	+0.9
2,844,967	-		PGA1_c27300	0.24	+0.1
2,844,967	-		PGA1_c27300	0.24	-0.3
2,844,967	-		PGA1_c27300	0.24	+2.5
2,844,967	-		PGA1_c27300	0.24	+0.1
2,844,985	+		PGA1_c27300	0.26	-0.2
2,845,002	-		PGA1_c27300	0.28	-0.4
2,845,016	+		PGA1_c27300	0.30	-0.7
2,845,024	-		PGA1_c27300	0.30	+1.0
2,845,033	-		PGA1_c27300	0.31	-0.8
2,845,035	+		PGA1_c27300	0.32	-0.1
2,845,047	+		PGA1_c27300	0.33	-1.1
2,845,047	+		PGA1_c27300	0.33	+1.1
2,845,048	-		PGA1_c27300	0.33	+0.1
2,845,055	-		PGA1_c27300	0.34	+1.3
2,845,055	-		PGA1_c27300	0.34	+0.9
2,845,064	-		PGA1_c27300	0.35	+1.0
2,845,093	-		PGA1_c27300	0.38	+0.0
2,845,098	-		PGA1_c27300	0.39	-0.3