Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3815

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3814 and Dshi_3815 are separated by 29 nucleotidesDshi_3815 and Dshi_3816 are separated by 2 nucleotidesDshi_3816 and Dshi_3817 are separated by 125 nucleotides Dshi_3814: Dshi_3814 - beta-lactamase domain protein (RefSeq), at 22,097 to 23,047 _3814 Dshi_3815: Dshi_3815 - monooxygenase FAD-binding (RefSeq), at 23,077 to 24,702 _3815 Dshi_3816: Dshi_3816 - hypothetical protein (RefSeq), at 24,705 to 24,890 _3816 Dshi_3817: Dshi_3817 - beta-ketoadipyl CoA thiolase (RefSeq), at 25,016 to 26,218 _3817 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.083 kb on - strandat 22.107 kb on - strandat 22.123 kb on - strandat 22.128 kb on + strandat 22.147 kb on - strandat 22.225 kb on - strand, within Dshi_3814at 22.241 kb on - strand, within Dshi_3814at 22.244 kb on + strand, within Dshi_3814at 22.330 kb on - strand, within Dshi_3814at 22.397 kb on - strand, within Dshi_3814at 22.466 kb on - strand, within Dshi_3814at 22.498 kb on + strand, within Dshi_3814at 22.501 kb on - strand, within Dshi_3814at 22.715 kb on + strand, within Dshi_3814at 22.715 kb on + strand, within Dshi_3814at 22.723 kb on - strand, within Dshi_3814at 22.723 kb on - strand, within Dshi_3814at 22.876 kb on + strand, within Dshi_3814at 22.955 kb on + strandat 22.996 kb on + strandat 23.004 kb on - strandat 23.102 kb on + strandat 23.183 kb on - strandat 23.189 kb on + strandat 23.259 kb on - strand, within Dshi_3815at 23.267 kb on + strand, within Dshi_3815at 23.302 kb on + strand, within Dshi_3815at 23.310 kb on - strand, within Dshi_3815at 23.320 kb on + strand, within Dshi_3815at 23.320 kb on + strand, within Dshi_3815at 23.328 kb on - strand, within Dshi_3815at 23.343 kb on - strand, within Dshi_3815at 23.426 kb on - strand, within Dshi_3815at 23.458 kb on + strand, within Dshi_3815at 23.493 kb on + strand, within Dshi_3815at 23.873 kb on - strand, within Dshi_3815at 23.897 kb on - strand, within Dshi_3815at 23.912 kb on + strand, within Dshi_3815at 23.917 kb on + strand, within Dshi_3815at 23.920 kb on - strand, within Dshi_3815at 23.949 kb on - strand, within Dshi_3815at 23.974 kb on - strand, within Dshi_3815at 24.135 kb on - strand, within Dshi_3815at 24.137 kb on - strand, within Dshi_3815at 24.139 kb on + strand, within Dshi_3815at 24.157 kb on - strand, within Dshi_3815at 24.165 kb on + strand, within Dshi_3815at 24.165 kb on + strand, within Dshi_3815at 24.173 kb on - strand, within Dshi_3815at 24.259 kb on + strand, within Dshi_3815at 24.267 kb on - strand, within Dshi_3815at 24.439 kb on - strand, within Dshi_3815at 24.632 kb on - strandat 24.721 kb on - strandat 24.721 kb on - strandat 25.144 kb on + strand, within Dshi_3817at 25.153 kb on - strand, within Dshi_3817at 25.313 kb on - strand, within Dshi_3817at 25.409 kb on + strand, within Dshi_3817at 25.410 kb on + strand, within Dshi_3817at 25.430 kb on + strand, within Dshi_3817at 25.695 kb on - strand, within Dshi_3817

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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22,083 - -0.9
22,107 - +0.9
22,123 - -0.2
22,128 + -0.8
22,147 - -0.4
22,225 - Dshi_3814 0.13 -1.0
22,241 - Dshi_3814 0.15 +0.3
22,244 + Dshi_3814 0.15 -0.3
22,330 - Dshi_3814 0.25 -0.7
22,397 - Dshi_3814 0.32 -0.4
22,466 - Dshi_3814 0.39 +0.1
22,498 + Dshi_3814 0.42 -0.8
22,501 - Dshi_3814 0.42 +1.0
22,715 + Dshi_3814 0.65 +1.4
22,715 + Dshi_3814 0.65 -0.5
22,723 - Dshi_3814 0.66 -1.3
22,723 - Dshi_3814 0.66 +0.8
22,876 + Dshi_3814 0.82 -0.1
22,955 + -0.6
22,996 + -2.6
23,004 - +0.0
23,102 + +0.2
23,183 - -1.4
23,189 + +0.0
23,259 - Dshi_3815 0.11 -1.5
23,267 + Dshi_3815 0.12 -0.7
23,302 + Dshi_3815 0.14 +0.9
23,310 - Dshi_3815 0.14 +0.3
23,320 + Dshi_3815 0.15 -1.8
23,320 + Dshi_3815 0.15 -0.4
23,328 - Dshi_3815 0.15 +0.4
23,343 - Dshi_3815 0.16 +0.7
23,426 - Dshi_3815 0.21 -0.9
23,458 + Dshi_3815 0.23 -0.0
23,493 + Dshi_3815 0.26 -0.2
23,873 - Dshi_3815 0.49 -1.1
23,897 - Dshi_3815 0.50 -0.4
23,912 + Dshi_3815 0.51 +0.6
23,917 + Dshi_3815 0.52 -0.2
23,920 - Dshi_3815 0.52 +0.5
23,949 - Dshi_3815 0.54 +0.4
23,974 - Dshi_3815 0.55 +0.0
24,135 - Dshi_3815 0.65 -0.1
24,137 - Dshi_3815 0.65 +0.4
24,139 + Dshi_3815 0.65 -0.1
24,157 - Dshi_3815 0.66 +0.9
24,165 + Dshi_3815 0.67 -0.0
24,165 + Dshi_3815 0.67 -0.4
24,173 - Dshi_3815 0.67 +0.3
24,259 + Dshi_3815 0.73 +0.9
24,267 - Dshi_3815 0.73 +0.6
24,439 - Dshi_3815 0.84 -0.2
24,632 - -0.5
24,721 - -0.5
24,721 - -1.0
25,144 + Dshi_3817 0.11 -0.7
25,153 - Dshi_3817 0.11 -0.5
25,313 - Dshi_3817 0.25 -0.6
25,409 + Dshi_3817 0.33 -0.8
25,410 + Dshi_3817 0.33 +0.2
25,430 + Dshi_3817 0.34 +0.2
25,695 - Dshi_3817 0.56 -0.1

Or see this region's nucleotide sequence