Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1766 and Dshi_1767 are separated by 150 nucleotides Dshi_1767 and Dshi_1768 are separated by 181 nucleotides Dshi_1768 and Dshi_1769 are separated by 11 nucleotides
Dshi_1766: Dshi_1766 - peptidoglycan-binding LysM (RefSeq), at 1,832,580 to 1,834,175
_1766
Dshi_1767: Dshi_1767 - hypothetical protein (RefSeq), at 1,834,326 to 1,834,865
_1767
Dshi_1768: Dshi_1768 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (RefSeq), at 1,835,047 to 1,835,688
_1768
Dshi_1769: Dshi_1769 - 6-phosphogluconate dehydratase (RefSeq), at 1,835,700 to 1,837,505
_1769
Position (kb)
1835
1836 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1834.343 kb on + strand at 1834.444 kb on + strand, within Dshi_1767 at 1834.457 kb on - strand, within Dshi_1767 at 1834.574 kb on + strand, within Dshi_1767 at 1834.643 kb on - strand, within Dshi_1767 at 1834.674 kb on + strand, within Dshi_1767 at 1834.847 kb on - strand at 1834.947 kb on - strand at 1834.947 kb on - strand at 1834.963 kb on + strand at 1834.995 kb on + strand at 1835.037 kb on - strand at 1835.585 kb on + strand, within Dshi_1768 at 1836.070 kb on + strand, within Dshi_1769 at 1836.147 kb on - strand, within Dshi_1769 at 1836.172 kb on + strand, within Dshi_1769 at 1836.265 kb on - strand, within Dshi_1769 at 1836.265 kb on - strand, within Dshi_1769 at 1836.436 kb on + strand, within Dshi_1769 at 1836.490 kb on + strand, within Dshi_1769
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 1,834,343 + +0.3 1,834,444 + Dshi_1767 0.22 +0.7 1,834,457 - Dshi_1767 0.24 -0.2 1,834,574 + Dshi_1767 0.46 +0.9 1,834,643 - Dshi_1767 0.59 +0.2 1,834,674 + Dshi_1767 0.64 +0.2 1,834,847 - -0.7 1,834,947 - -0.2 1,834,947 - +1.0 1,834,963 + -0.5 1,834,995 + +0.2 1,835,037 - -0.5 1,835,585 + Dshi_1768 0.84 +0.1 1,836,070 + Dshi_1769 0.20 +0.2 1,836,147 - Dshi_1769 0.25 -3.0 1,836,172 + Dshi_1769 0.26 -3.4 1,836,265 - Dshi_1769 0.31 -1.5 1,836,265 - Dshi_1769 0.31 -0.7 1,836,436 + Dshi_1769 0.41 -0.4 1,836,490 + Dshi_1769 0.44 -1.8
Or see this region's nucleotide sequence