Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0871

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0870 and Dshi_0871 are separated by 73 nucleotidesDshi_0871 and Dshi_0872 are separated by 86 nucleotides Dshi_0870: Dshi_0870 - transcriptional regulator, SARP family (RefSeq), at 885,921 to 887,960 _0870 Dshi_0871: Dshi_0871 - hypothetical protein (RefSeq), at 888,034 to 888,300 _0871 Dshi_0872: Dshi_0872 - extracellular solute-binding protein family 5 (RefSeq), at 888,387 to 889,970 _0872 Position (kb) 888 889Strain fitness (log2 ratio) -2 -1 0 1 2at 887.055 kb on - strand, within Dshi_0870at 887.057 kb on + strand, within Dshi_0870at 887.057 kb on + strand, within Dshi_0870at 887.088 kb on + strand, within Dshi_0870at 887.088 kb on + strand, within Dshi_0870at 887.091 kb on - strand, within Dshi_0870at 887.096 kb on - strand, within Dshi_0870at 887.096 kb on - strand, within Dshi_0870at 887.117 kb on + strand, within Dshi_0870at 887.152 kb on - strand, within Dshi_0870at 887.156 kb on + strand, within Dshi_0870at 887.202 kb on + strand, within Dshi_0870at 887.276 kb on + strand, within Dshi_0870at 887.320 kb on - strand, within Dshi_0870at 887.362 kb on + strand, within Dshi_0870at 887.436 kb on - strand, within Dshi_0870at 887.571 kb on + strand, within Dshi_0870at 887.572 kb on + strand, within Dshi_0870at 887.614 kb on + strand, within Dshi_0870at 887.662 kb on + strand, within Dshi_0870at 887.662 kb on + strand, within Dshi_0870at 887.672 kb on + strand, within Dshi_0870at 887.680 kb on - strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.707 kb on + strand, within Dshi_0870at 887.710 kb on - strand, within Dshi_0870at 887.715 kb on - strand, within Dshi_0870at 887.720 kb on - strand, within Dshi_0870at 887.729 kb on + strand, within Dshi_0870at 887.758 kb on - strandat 887.774 kb on + strandat 887.792 kb on - strandat 887.823 kb on - strandat 887.845 kb on + strandat 887.849 kb on + strandat 887.889 kb on + strandat 887.936 kb on - strandat 888.220 kb on - strand, within Dshi_0871at 888.229 kb on + strand, within Dshi_0871at 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.319 kb on + strandat 888.327 kb on - strandat 888.327 kb on - strandat 888.327 kb on - strandat 888.334 kb on - strandat 888.456 kb on + strandat 888.504 kb on + strandat 888.531 kb on - strandat 888.537 kb on + strandat 888.550 kb on - strand, within Dshi_0872at 888.557 kb on + strand, within Dshi_0872at 888.589 kb on - strand, within Dshi_0872at 888.616 kb on + strandat 888.650 kb on + strand, within Dshi_0872at 888.657 kb on + strand, within Dshi_0872at 888.696 kb on + strand, within Dshi_0872at 888.854 kb on - strand, within Dshi_0872at 888.861 kb on + strand, within Dshi_0872at 888.866 kb on + strand, within Dshi_0872at 888.874 kb on - strand, within Dshi_0872at 888.966 kb on - strand, within Dshi_0872at 889.174 kb on + strand, within Dshi_0872at 889.194 kb on + strand, within Dshi_0872

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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887,055 - Dshi_0870 0.56 -1.1
887,057 + Dshi_0870 0.56 +0.5
887,057 + Dshi_0870 0.56 -0.2
887,088 + Dshi_0870 0.57 +0.9
887,088 + Dshi_0870 0.57 -2.6
887,091 - Dshi_0870 0.57 -0.1
887,096 - Dshi_0870 0.58 -1.0
887,096 - Dshi_0870 0.58 -1.5
887,117 + Dshi_0870 0.59 -0.3
887,152 - Dshi_0870 0.60 +1.2
887,156 + Dshi_0870 0.61 -2.5
887,202 + Dshi_0870 0.63 +0.3
887,276 + Dshi_0870 0.66 -1.4
887,320 - Dshi_0870 0.69 -0.2
887,362 + Dshi_0870 0.71 -0.4
887,436 - Dshi_0870 0.74 +0.8
887,571 + Dshi_0870 0.81 +0.8
887,572 + Dshi_0870 0.81 +0.0
887,614 + Dshi_0870 0.83 +0.6
887,662 + Dshi_0870 0.85 -0.0
887,662 + Dshi_0870 0.85 +0.9
887,672 + Dshi_0870 0.86 -0.0
887,680 - Dshi_0870 0.86 -0.3
887,707 + Dshi_0870 0.88 +1.6
887,707 + Dshi_0870 0.88 -0.7
887,707 + Dshi_0870 0.88 -0.4
887,707 + Dshi_0870 0.88 -0.9
887,707 + Dshi_0870 0.88 +0.9
887,710 - Dshi_0870 0.88 +0.7
887,715 - Dshi_0870 0.88 +0.9
887,720 - Dshi_0870 0.88 +0.0
887,729 + Dshi_0870 0.89 +0.7
887,758 - -0.6
887,774 + -0.9
887,792 - +0.2
887,823 - -0.4
887,845 + -0.2
887,849 + +0.3
887,889 + +0.3
887,936 - -0.1
888,220 - Dshi_0871 0.70 -0.5
888,229 + Dshi_0871 0.73 -0.5
888,319 + -0.1
888,319 + -1.8
888,319 + +0.7
888,319 + +0.6
888,319 + -0.5
888,319 + -0.0
888,327 - +1.1
888,327 - +1.4
888,327 - -0.0
888,334 - +0.1
888,456 + -0.2
888,504 + +1.0
888,531 - -0.6
888,537 + +2.5
888,550 - Dshi_0872 0.10 -0.5
888,557 + Dshi_0872 0.11 -0.2
888,589 - Dshi_0872 0.13 -0.3
888,616 + +0.0
888,650 + Dshi_0872 0.17 -0.3
888,657 + Dshi_0872 0.17 +0.3
888,696 + Dshi_0872 0.20 -0.4
888,854 - Dshi_0872 0.29 -0.3
888,861 + Dshi_0872 0.30 +0.2
888,866 + Dshi_0872 0.30 +2.2
888,874 - Dshi_0872 0.31 -1.6
888,966 - Dshi_0872 0.37 +0.0
889,174 + Dshi_0872 0.50 +0.8
889,194 + Dshi_0872 0.51 -1.7

Or see this region's nucleotide sequence