Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0774

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0772 and Dshi_0773 overlap by 4 nucleotidesDshi_0773 and Dshi_0774 are separated by 42 nucleotidesDshi_0774 and Dshi_0775 are separated by 548 nucleotides Dshi_0772: Dshi_0772 - hypothetical protein (RefSeq), at 777,464 to 778,210 _0772 Dshi_0773: Dshi_0773 - protein of unknown function DUF692 (RefSeq), at 778,207 to 779,157 _0773 Dshi_0774: Dshi_0774 - hypothetical protein (RefSeq), at 779,200 to 779,487 _0774 Dshi_0775: Dshi_0775 - tartrate dehydrogenase (RefSeq), at 780,036 to 781,115 _0775 Position (kb) 779 780Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 778.345 kb on + strand, within Dshi_0773at 778.433 kb on + strand, within Dshi_0773at 778.509 kb on - strand, within Dshi_0773at 778.623 kb on + strand, within Dshi_0773at 778.654 kb on + strand, within Dshi_0773at 778.664 kb on + strand, within Dshi_0773at 778.664 kb on + strand, within Dshi_0773at 778.712 kb on + strand, within Dshi_0773at 778.720 kb on - strand, within Dshi_0773at 778.720 kb on - strand, within Dshi_0773at 778.750 kb on + strand, within Dshi_0773at 778.830 kb on + strand, within Dshi_0773at 778.843 kb on - strand, within Dshi_0773at 778.848 kb on - strand, within Dshi_0773at 778.901 kb on + strand, within Dshi_0773at 778.901 kb on + strand, within Dshi_0773at 778.907 kb on + strand, within Dshi_0773at 779.256 kb on + strand, within Dshi_0774at 779.324 kb on - strand, within Dshi_0774at 779.335 kb on + strand, within Dshi_0774at 779.410 kb on - strand, within Dshi_0774at 779.415 kb on - strand, within Dshi_0774at 779.417 kb on + strand, within Dshi_0774at 779.431 kb on + strand, within Dshi_0774at 779.439 kb on - strand, within Dshi_0774at 779.460 kb on + strandat 779.522 kb on + strandat 779.530 kb on - strandat 779.695 kb on - strandat 779.706 kb on + strandat 779.706 kb on + strandat 779.714 kb on - strandat 779.733 kb on + strandat 779.804 kb on + strandat 779.814 kb on + strandat 779.836 kb on - strandat 779.836 kb on - strandat 779.870 kb on + strandat 779.878 kb on - strandat 779.908 kb on + strandat 779.963 kb on + strandat 779.963 kb on + strandat 780.105 kb on - strandat 780.136 kb on + strandat 780.221 kb on + strand, within Dshi_0775at 780.368 kb on + strand, within Dshi_0775at 780.401 kb on - strand, within Dshi_0775at 780.418 kb on - strand, within Dshi_0775at 780.459 kb on - strand, within Dshi_0775

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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778,345 + Dshi_0773 0.15 -0.0
778,433 + Dshi_0773 0.24 -2.1
778,509 - Dshi_0773 0.32 -0.6
778,623 + Dshi_0773 0.44 -0.7
778,654 + Dshi_0773 0.47 -0.2
778,664 + Dshi_0773 0.48 -0.2
778,664 + Dshi_0773 0.48 -0.8
778,712 + Dshi_0773 0.53 -0.3
778,720 - Dshi_0773 0.54 -3.5
778,720 - Dshi_0773 0.54 +0.3
778,750 + Dshi_0773 0.57 -2.6
778,830 + Dshi_0773 0.66 -0.4
778,843 - Dshi_0773 0.67 +0.9
778,848 - Dshi_0773 0.67 -0.9
778,901 + Dshi_0773 0.73 +1.3
778,901 + Dshi_0773 0.73 +0.2
778,907 + Dshi_0773 0.74 -0.6
779,256 + Dshi_0774 0.19 -3.9
779,324 - Dshi_0774 0.43 +0.5
779,335 + Dshi_0774 0.47 +0.1
779,410 - Dshi_0774 0.73 -0.1
779,415 - Dshi_0774 0.75 -1.9
779,417 + Dshi_0774 0.75 -0.4
779,431 + Dshi_0774 0.80 -0.2
779,439 - Dshi_0774 0.83 -0.5
779,460 + -3.3
779,522 + +1.4
779,530 - +1.2
779,695 - -1.0
779,706 + -1.5
779,706 + +1.8
779,714 - +0.8
779,733 + +0.8
779,804 + -1.8
779,814 + -0.0
779,836 - -0.5
779,836 - -0.1
779,870 + -0.8
779,878 - -1.8
779,908 + -0.2
779,963 + -0.9
779,963 + -2.0
780,105 - +0.3
780,136 + +1.1
780,221 + Dshi_0775 0.17 -0.4
780,368 + Dshi_0775 0.31 +0.5
780,401 - Dshi_0775 0.34 +0.0
780,418 - Dshi_0775 0.35 +0.6
780,459 - Dshi_0775 0.39 -1.0

Or see this region's nucleotide sequence