Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0732 and Dshi_0733 overlap by 8 nucleotides Dshi_0733 and Dshi_0734 overlap by 4 nucleotides Dshi_0734 and Dshi_0735 overlap by 14 nucleotides Dshi_0735 and Dshi_0736 overlap by 4 nucleotides Dshi_0736 and Dshi_0737 are separated by 63 nucleotides
Dshi_0732: Dshi_0732 - cation antiporter (RefSeq), at 741,641 to 741,994
_0732
Dshi_0733: Dshi_0733 - multiple resistance and pH regulation protein F (RefSeq), at 741,987 to 742,343
_0733
Dshi_0734: Dshi_0734 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 742,340 to 742,687
_0734
Dshi_0735: Dshi_0735 - hypothetical protein (RefSeq), at 742,674 to 743,288
_0735
Dshi_0736: Dshi_0736 - GCN5-related N-acetyltransferase (RefSeq), at 743,285 to 743,770
_0736
Dshi_0737: Dshi_0737 - heat shock protein DnaJ domain protein (RefSeq), at 743,834 to 744,517
_0737
Position (kb) 742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 741.734 kb on - strand, within Dshi_0732 at 741.763 kb on + strand, within Dshi_0732 at 742.122 kb on - strand, within Dshi_0733 at 742.141 kb on + strand, within Dshi_0733 at 742.375 kb on + strand, within Dshi_0734 at 742.470 kb on + strand, within Dshi_0734 at 742.518 kb on - strand, within Dshi_0734 at 742.578 kb on + strand, within Dshi_0734 at 742.601 kb on + strand, within Dshi_0734 at 742.628 kb on + strand, within Dshi_0734 at 742.629 kb on - strand, within Dshi_0734 at 742.684 kb on - strand at 742.684 kb on - strand at 742.764 kb on - strand, within Dshi_0735 at 742.768 kb on + strand, within Dshi_0735 at 742.778 kb on + strand, within Dshi_0735 at 742.834 kb on + strand, within Dshi_0735 at 742.864 kb on - strand, within Dshi_0735 at 742.942 kb on + strand, within Dshi_0735 at 742.950 kb on - strand, within Dshi_0735 at 743.101 kb on - strand, within Dshi_0735 at 743.165 kb on - strand, within Dshi_0735 at 743.171 kb on + strand, within Dshi_0735 at 743.347 kb on - strand, within Dshi_0736 at 743.397 kb on + strand, within Dshi_0736 at 743.599 kb on - strand, within Dshi_0736 at 743.631 kb on + strand, within Dshi_0736 at 743.639 kb on - strand, within Dshi_0736 at 743.674 kb on - strand, within Dshi_0736 at 743.678 kb on + strand, within Dshi_0736 at 743.686 kb on - strand, within Dshi_0736 at 743.769 kb on + strand at 743.824 kb on + strand at 743.941 kb on - strand, within Dshi_0737 at 744.079 kb on - strand, within Dshi_0737 at 744.110 kb on + strand, within Dshi_0737
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 741,734 - Dshi_0732 0.26 -0.9 741,763 + Dshi_0732 0.34 -1.4 742,122 - Dshi_0733 0.38 -0.1 742,141 + Dshi_0733 0.43 +0.9 742,375 + Dshi_0734 0.10 -1.9 742,470 + Dshi_0734 0.37 -0.0 742,518 - Dshi_0734 0.51 -0.4 742,578 + Dshi_0734 0.68 +0.1 742,601 + Dshi_0734 0.75 -3.6 742,628 + Dshi_0734 0.83 -0.8 742,629 - Dshi_0734 0.83 +1.8 742,684 - -1.2 742,684 - -1.5 742,764 - Dshi_0735 0.15 +0.6 742,768 + Dshi_0735 0.15 +0.9 742,778 + Dshi_0735 0.17 +0.3 742,834 + Dshi_0735 0.26 -1.5 742,864 - Dshi_0735 0.31 +0.2 742,942 + Dshi_0735 0.44 +1.2 742,950 - Dshi_0735 0.45 +0.8 743,101 - Dshi_0735 0.69 -0.3 743,165 - Dshi_0735 0.80 +0.5 743,171 + Dshi_0735 0.81 -0.4 743,347 - Dshi_0736 0.13 -0.2 743,397 + Dshi_0736 0.23 -0.6 743,599 - Dshi_0736 0.65 -3.1 743,631 + Dshi_0736 0.71 -0.8 743,639 - Dshi_0736 0.73 -1.8 743,674 - Dshi_0736 0.80 -1.1 743,678 + Dshi_0736 0.81 -1.3 743,686 - Dshi_0736 0.83 -0.0 743,769 + +0.5 743,824 + -1.2 743,941 - Dshi_0737 0.16 +0.7 744,079 - Dshi_0737 0.36 -2.5 744,110 + Dshi_0737 0.40 -0.4
Or see this region's nucleotide sequence