Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0726 and Dshi_0727 are separated by 178 nucleotides Dshi_0727 and Dshi_0728 are separated by 353 nucleotides
Dshi_0726: Dshi_0726 - methylmalonyl-CoA mutase, large subunit (RefSeq), at 733,404 to 735,542
_0726
Dshi_0727: Dshi_0727 - transcriptional regulator, LysR family (RefSeq), at 735,721 to 736,650
_0727
Dshi_0728: Dshi_0728 - NADH dehydrogenase (quinone) (RefSeq), at 737,004 to 739,244
_0728
Position (kb) 735
736
737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 735.641 kb on - strand at 735.707 kb on + strand at 735.739 kb on - strand at 735.799 kb on + strand at 735.862 kb on - strand, within Dshi_0727 at 735.884 kb on - strand at 735.988 kb on - strand, within Dshi_0727 at 736.000 kb on - strand, within Dshi_0727 at 736.043 kb on - strand, within Dshi_0727 at 736.115 kb on + strand, within Dshi_0727 at 736.192 kb on - strand, within Dshi_0727 at 736.493 kb on + strand, within Dshi_0727 at 736.493 kb on + strand, within Dshi_0727 at 736.501 kb on - strand, within Dshi_0727 at 736.501 kb on - strand, within Dshi_0727 at 736.529 kb on + strand, within Dshi_0727 at 736.629 kb on + strand at 736.637 kb on - strand at 736.653 kb on - strand at 736.743 kb on + strand at 736.749 kb on + strand at 736.757 kb on - strand at 736.757 kb on - strand at 736.829 kb on + strand at 736.836 kb on - strand at 736.855 kb on + strand at 736.857 kb on - strand at 736.863 kb on - strand at 736.863 kb on - strand at 736.877 kb on + strand at 736.885 kb on - strand at 736.899 kb on + strand at 736.936 kb on + strand at 736.936 kb on - strand at 736.947 kb on + strand at 736.947 kb on + strand at 736.952 kb on + strand at 736.952 kb on + strand at 736.968 kb on + strand at 736.973 kb on + strand at 736.976 kb on - strand at 736.976 kb on - strand at 737.012 kb on + strand at 737.034 kb on + strand at 737.077 kb on - strand at 737.077 kb on - strand at 737.086 kb on + strand at 737.086 kb on + strand at 737.092 kb on + strand at 737.096 kb on + strand at 737.097 kb on + strand at 737.105 kb on - strand at 737.208 kb on + strand at 737.221 kb on - strand at 737.326 kb on + strand, within Dshi_0728 at 737.367 kb on - strand, within Dshi_0728 at 737.464 kb on - strand, within Dshi_0728 at 737.469 kb on + strand, within Dshi_0728 at 737.503 kb on + strand, within Dshi_0728 at 737.548 kb on + strand, within Dshi_0728 at 737.553 kb on + strand, within Dshi_0728 at 737.615 kb on + strand, within Dshi_0728 at 737.632 kb on - strand, within Dshi_0728 at 737.632 kb on - strand, within Dshi_0728 at 737.648 kb on - strand, within Dshi_0728
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 735,641 - +0.1 735,707 + -0.7 735,739 - -1.0 735,799 + -1.4 735,862 - Dshi_0727 0.15 -0.1 735,884 - +0.1 735,988 - Dshi_0727 0.29 -1.1 736,000 - Dshi_0727 0.30 -0.4 736,043 - Dshi_0727 0.35 -0.4 736,115 + Dshi_0727 0.42 -0.4 736,192 - Dshi_0727 0.51 +0.4 736,493 + Dshi_0727 0.83 -0.9 736,493 + Dshi_0727 0.83 +1.9 736,501 - Dshi_0727 0.84 -0.0 736,501 - Dshi_0727 0.84 -0.7 736,529 + Dshi_0727 0.87 -0.4 736,629 + +0.6 736,637 - -0.0 736,653 - +0.1 736,743 + -1.4 736,749 + +1.3 736,757 - -0.6 736,757 - +0.2 736,829 + -1.1 736,836 - +0.9 736,855 + -3.0 736,857 - +0.4 736,863 - -0.1 736,863 - +0.6 736,877 + -0.3 736,885 - +0.4 736,899 + -1.9 736,936 + +0.8 736,936 - +1.0 736,947 + -0.8 736,947 + +1.3 736,952 + +0.4 736,952 + -1.1 736,968 + -0.6 736,973 + -0.4 736,976 - -1.1 736,976 - -2.3 737,012 + +0.1 737,034 + +0.1 737,077 - +2.7 737,077 - -1.5 737,086 + -0.1 737,086 + -0.6 737,092 + -2.1 737,096 + +0.5 737,097 + -2.5 737,105 - -1.5 737,208 + -0.7 737,221 - +0.5 737,326 + Dshi_0728 0.14 -0.8 737,367 - Dshi_0728 0.16 +1.5 737,464 - Dshi_0728 0.21 -1.6 737,469 + Dshi_0728 0.21 -3.1 737,503 + Dshi_0728 0.22 -0.8 737,548 + Dshi_0728 0.24 -3.3 737,553 + Dshi_0728 0.24 -1.9 737,615 + Dshi_0728 0.27 -1.3 737,632 - Dshi_0728 0.28 -2.2 737,632 - Dshi_0728 0.28 +0.3 737,648 - Dshi_0728 0.29 +0.5
Or see this region's nucleotide sequence