Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0618 and Dshi_0619 are separated by 228 nucleotides Dshi_0619 and Dshi_0620 overlap by 4 nucleotides Dshi_0620 and Dshi_0621 are separated by 159 nucleotides Dshi_0621 and Dshi_0622 are separated by 73 nucleotides
Dshi_0618: Dshi_0618 - hypothetical protein (RefSeq), at 611,730 to 612,320
_0618
Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863
_0619
Dshi_0620: Dshi_0620 - short-chain dehydrogenase/reductase SDR (RefSeq), at 612,860 to 613,612
_0620
Dshi_0621: Dshi_0621 - beta-Ig-H3/fasciclin (RefSeq), at 613,772 to 614,260
_0621
Dshi_0622: Dshi_0622 - beta-Ig-H3/fasciclin (RefSeq), at 614,334 to 614,825
_0622
Position (kb) 612
613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 611.863 kb on + strand, within Dshi_0618 at 611.974 kb on - strand, within Dshi_0618 at 612.296 kb on - strand at 612.376 kb on + strand at 612.383 kb on + strand at 612.391 kb on - strand at 612.391 kb on - strand at 612.442 kb on + strand at 612.526 kb on + strand at 612.527 kb on + strand at 612.600 kb on - strand, within Dshi_0619 at 612.651 kb on - strand, within Dshi_0619 at 612.673 kb on + strand, within Dshi_0619 at 612.707 kb on - strand, within Dshi_0619 at 612.746 kb on + strand, within Dshi_0619 at 612.811 kb on + strand, within Dshi_0619 at 612.819 kb on - strand, within Dshi_0619 at 612.848 kb on - strand at 612.915 kb on + strand at 613.009 kb on - strand, within Dshi_0620 at 613.053 kb on + strand, within Dshi_0620 at 613.078 kb on + strand, within Dshi_0620 at 613.088 kb on + strand, within Dshi_0620 at 613.120 kb on + strand, within Dshi_0620 at 613.128 kb on + strand, within Dshi_0620 at 613.130 kb on - strand, within Dshi_0620 at 613.169 kb on + strand, within Dshi_0620 at 613.186 kb on + strand, within Dshi_0620 at 613.188 kb on + strand, within Dshi_0620 at 613.188 kb on + strand, within Dshi_0620 at 613.226 kb on - strand, within Dshi_0620 at 613.249 kb on + strand, within Dshi_0620 at 613.343 kb on + strand, within Dshi_0620 at 613.356 kb on + strand, within Dshi_0620 at 613.435 kb on + strand, within Dshi_0620 at 613.468 kb on + strand, within Dshi_0620 at 613.468 kb on + strand, within Dshi_0620 at 613.476 kb on - strand, within Dshi_0620 at 613.478 kb on + strand, within Dshi_0620 at 613.591 kb on + strand at 613.709 kb on - strand at 613.710 kb on + strand at 613.715 kb on + strand at 613.723 kb on - strand at 613.819 kb on - strand at 613.887 kb on + strand, within Dshi_0621 at 613.887 kb on - strand, within Dshi_0621 at 613.924 kb on - strand, within Dshi_0621 at 613.931 kb on - strand, within Dshi_0621 at 613.941 kb on - strand, within Dshi_0621 at 613.967 kb on + strand, within Dshi_0621 at 614.001 kb on + strand, within Dshi_0621 at 614.012 kb on + strand, within Dshi_0621 at 614.012 kb on + strand, within Dshi_0621 at 614.208 kb on + strand, within Dshi_0621 at 614.218 kb on + strand at 614.311 kb on - strand at 614.317 kb on + strand at 614.356 kb on - strand at 614.408 kb on - strand, within Dshi_0622 at 614.423 kb on + strand, within Dshi_0622 at 614.448 kb on - strand, within Dshi_0622 at 614.532 kb on + strand, within Dshi_0622 at 614.555 kb on - strand, within Dshi_0622
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 611,863 + Dshi_0618 0.23 -0.0 611,974 - Dshi_0618 0.41 +0.6 612,296 - +1.0 612,376 + +0.3 612,383 + +1.4 612,391 - -0.3 612,391 - +1.1 612,442 + -0.3 612,526 + +0.4 612,527 + +0.3 612,600 - Dshi_0619 0.16 -0.2 612,651 - Dshi_0619 0.32 -1.4 612,673 + Dshi_0619 0.39 -1.1 612,707 - Dshi_0619 0.50 -0.6 612,746 + Dshi_0619 0.63 +0.5 612,811 + Dshi_0619 0.83 -1.0 612,819 - Dshi_0619 0.86 +0.3 612,848 - -0.2 612,915 + +0.5 613,009 - Dshi_0620 0.20 -1.0 613,053 + Dshi_0620 0.26 +1.1 613,078 + Dshi_0620 0.29 -1.2 613,088 + Dshi_0620 0.30 +0.8 613,120 + Dshi_0620 0.35 -0.5 613,128 + Dshi_0620 0.36 +1.1 613,130 - Dshi_0620 0.36 -0.2 613,169 + Dshi_0620 0.41 -0.5 613,186 + Dshi_0620 0.43 +1.6 613,188 + Dshi_0620 0.44 -0.5 613,188 + Dshi_0620 0.44 +0.8 613,226 - Dshi_0620 0.49 +0.4 613,249 + Dshi_0620 0.52 -1.0 613,343 + Dshi_0620 0.64 +0.4 613,356 + Dshi_0620 0.66 -0.9 613,435 + Dshi_0620 0.76 +0.0 613,468 + Dshi_0620 0.81 -1.4 613,468 + Dshi_0620 0.81 +1.0 613,476 - Dshi_0620 0.82 -0.3 613,478 + Dshi_0620 0.82 +0.3 613,591 + +0.9 613,709 - -0.4 613,710 + -0.2 613,715 + +0.2 613,723 - +0.8 613,819 - +0.7 613,887 + Dshi_0621 0.24 -0.4 613,887 - Dshi_0621 0.24 -0.0 613,924 - Dshi_0621 0.31 -0.6 613,931 - Dshi_0621 0.33 -1.9 613,941 - Dshi_0621 0.35 +0.7 613,967 + Dshi_0621 0.40 -0.3 614,001 + Dshi_0621 0.47 -0.1 614,012 + Dshi_0621 0.49 -0.9 614,012 + Dshi_0621 0.49 +1.2 614,208 + Dshi_0621 0.89 +0.6 614,218 + +0.9 614,311 - +0.8 614,317 + -1.0 614,356 - +0.5 614,408 - Dshi_0622 0.15 +0.5 614,423 + Dshi_0622 0.18 +0.6 614,448 - Dshi_0622 0.23 -0.6 614,532 + Dshi_0622 0.40 +0.5 614,555 - Dshi_0622 0.45 +0.2
Or see this region's nucleotide sequence