Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0456 and Dshi_0457 overlap by 4 nucleotides Dshi_0457 and Dshi_0458 overlap by 4 nucleotides Dshi_0458 and Dshi_0459 overlap by 8 nucleotides Dshi_0459 and Dshi_0460 overlap by 4 nucleotides
Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995
_0456
Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900
_0457
Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268
_0458
Dshi_0459: Dshi_0459 - von Willebrand factor type A (RefSeq), at 445,261 to 446,223
_0459
Dshi_0460: Dshi_0460 - hypothetical protein (RefSeq), at 446,220 to 447,119
_0460
Position (kb) 444
445
446 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 443.912 kb on + strand at 443.912 kb on + strand at 443.948 kb on - strand at 443.979 kb on - strand at 444.020 kb on - strand at 444.054 kb on + strand at 444.127 kb on - strand, within Dshi_0457 at 444.203 kb on - strand, within Dshi_0457 at 444.291 kb on + strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.299 kb on - strand, within Dshi_0457 at 444.372 kb on - strand, within Dshi_0457 at 444.389 kb on - strand, within Dshi_0457 at 444.420 kb on - strand, within Dshi_0457 at 444.526 kb on - strand, within Dshi_0457 at 444.541 kb on + strand, within Dshi_0457 at 444.559 kb on + strand, within Dshi_0457 at 444.688 kb on - strand, within Dshi_0457 at 444.712 kb on - strand, within Dshi_0457 at 444.801 kb on - strand, within Dshi_0457 at 444.864 kb on - strand at 444.886 kb on - strand at 444.946 kb on + strand, within Dshi_0458 at 444.977 kb on + strand, within Dshi_0458 at 444.982 kb on + strand, within Dshi_0458 at 444.992 kb on + strand, within Dshi_0458 at 445.092 kb on + strand, within Dshi_0458 at 445.102 kb on - strand, within Dshi_0458 at 445.107 kb on - strand, within Dshi_0458 at 445.173 kb on + strand, within Dshi_0458 at 445.178 kb on + strand, within Dshi_0458 at 445.181 kb on - strand, within Dshi_0458 at 445.183 kb on + strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.191 kb on - strand, within Dshi_0458 at 445.205 kb on + strand, within Dshi_0458 at 445.208 kb on - strand, within Dshi_0458 at 445.213 kb on - strand, within Dshi_0458 at 445.219 kb on - strand, within Dshi_0458 at 445.288 kb on - strand at 445.293 kb on + strand at 445.313 kb on - strand at 445.360 kb on - strand, within Dshi_0459 at 445.371 kb on - strand, within Dshi_0459 at 445.384 kb on + strand, within Dshi_0459 at 445.385 kb on + strand, within Dshi_0459 at 445.422 kb on + strand, within Dshi_0459 at 445.611 kb on + strand, within Dshi_0459 at 445.628 kb on - strand, within Dshi_0459 at 445.629 kb on - strand, within Dshi_0459 at 445.657 kb on + strand, within Dshi_0459 at 445.665 kb on - strand, within Dshi_0459 at 445.667 kb on + strand, within Dshi_0459 at 445.706 kb on - strand, within Dshi_0459 at 445.775 kb on - strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.799 kb on + strand, within Dshi_0459 at 445.805 kb on + strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.807 kb on - strand, within Dshi_0459 at 445.830 kb on - strand, within Dshi_0459 at 445.832 kb on + strand, within Dshi_0459 at 445.840 kb on - strand, within Dshi_0459 at 445.868 kb on - strand, within Dshi_0459 at 445.904 kb on - strand, within Dshi_0459 at 445.952 kb on + strand, within Dshi_0459 at 445.974 kb on - strand, within Dshi_0459 at 445.974 kb on - strand, within Dshi_0459 at 445.984 kb on - strand, within Dshi_0459 at 446.015 kb on + strand, within Dshi_0459 at 446.024 kb on - strand, within Dshi_0459 at 446.029 kb on + strand, within Dshi_0459 at 446.042 kb on - strand, within Dshi_0459 at 446.096 kb on + strand, within Dshi_0459 at 446.123 kb on + strand, within Dshi_0459 at 446.142 kb on + strand at 446.142 kb on + strand at 446.160 kb on + strand at 446.168 kb on - strand at 446.207 kb on + strand at 446.207 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 443,912 + -0.2 443,912 + -0.7 443,948 - +0.2 443,979 - -0.9 444,020 - -1.7 444,054 + +0.2 444,127 - Dshi_0457 0.15 -1.6 444,203 - Dshi_0457 0.23 -0.1 444,291 + Dshi_0457 0.33 +0.6 444,294 - Dshi_0457 0.33 -0.5 444,294 - Dshi_0457 0.33 +1.1 444,294 - Dshi_0457 0.33 -0.3 444,294 - Dshi_0457 0.33 -0.3 444,299 - Dshi_0457 0.34 +1.1 444,372 - Dshi_0457 0.42 -0.7 444,389 - Dshi_0457 0.44 -0.1 444,420 - Dshi_0457 0.47 -1.4 444,526 - Dshi_0457 0.59 -0.4 444,541 + Dshi_0457 0.60 -0.5 444,559 + Dshi_0457 0.62 -0.9 444,688 - Dshi_0457 0.77 +1.1 444,712 - Dshi_0457 0.79 -0.8 444,801 - Dshi_0457 0.89 +0.3 444,864 - -0.7 444,886 - +0.5 444,946 + Dshi_0458 0.13 -0.3 444,977 + Dshi_0458 0.22 -0.8 444,982 + Dshi_0458 0.23 -0.1 444,992 + Dshi_0458 0.26 -0.9 445,092 + Dshi_0458 0.52 -0.2 445,102 - Dshi_0458 0.55 -1.1 445,107 - Dshi_0458 0.56 -0.2 445,173 + Dshi_0458 0.74 -1.7 445,178 + Dshi_0458 0.76 -0.3 445,181 - Dshi_0458 0.76 -1.3 445,183 + Dshi_0458 0.77 -0.0 445,191 - Dshi_0458 0.79 -1.3 445,191 - Dshi_0458 0.79 -0.1 445,191 - Dshi_0458 0.79 -1.8 445,205 + Dshi_0458 0.83 +0.3 445,208 - Dshi_0458 0.84 +0.2 445,213 - Dshi_0458 0.85 -1.1 445,219 - Dshi_0458 0.87 -0.2 445,288 - +0.8 445,293 + +1.2 445,313 - +0.5 445,360 - Dshi_0459 0.10 -1.5 445,371 - Dshi_0459 0.11 -0.4 445,384 + Dshi_0459 0.13 +0.5 445,385 + Dshi_0459 0.13 -1.7 445,422 + Dshi_0459 0.17 -0.0 445,611 + Dshi_0459 0.36 +0.7 445,628 - Dshi_0459 0.38 -1.0 445,629 - Dshi_0459 0.38 +0.7 445,657 + Dshi_0459 0.41 -1.2 445,665 - Dshi_0459 0.42 +0.9 445,667 + Dshi_0459 0.42 -1.2 445,706 - Dshi_0459 0.46 -0.0 445,775 - Dshi_0459 0.53 -0.5 445,799 + Dshi_0459 0.56 +0.0 445,799 + Dshi_0459 0.56 -0.7 445,799 + Dshi_0459 0.56 -1.2 445,805 + Dshi_0459 0.56 +1.5 445,807 - Dshi_0459 0.57 -0.6 445,807 - Dshi_0459 0.57 -1.5 445,830 - Dshi_0459 0.59 -0.5 445,832 + Dshi_0459 0.59 -1.0 445,840 - Dshi_0459 0.60 -0.5 445,868 - Dshi_0459 0.63 -0.3 445,904 - Dshi_0459 0.67 +0.2 445,952 + Dshi_0459 0.72 -0.4 445,974 - Dshi_0459 0.74 +1.6 445,974 - Dshi_0459 0.74 -2.9 445,984 - Dshi_0459 0.75 +0.9 446,015 + Dshi_0459 0.78 -0.5 446,024 - Dshi_0459 0.79 -1.2 446,029 + Dshi_0459 0.80 -0.2 446,042 - Dshi_0459 0.81 -0.4 446,096 + Dshi_0459 0.87 +2.2 446,123 + Dshi_0459 0.90 -0.0 446,142 + +0.6 446,142 + -0.8 446,160 + -2.7 446,168 - -1.2 446,207 + +0.2 446,207 + +1.5
Or see this region's nucleotide sequence