Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0081

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0080 and Dshi_0081 are separated by 124 nucleotidesDshi_0081 and Dshi_0082 are separated by 75 nucleotides Dshi_0080: Dshi_0080 - protein of unknown function DUF6 transmembrane (RefSeq), at 78,969 to 79,955 _0080 Dshi_0081: Dshi_0081 - 3-isopropylmalate dehydrogenase (RefSeq), at 80,080 to 81,186 _0081 Dshi_0082: Dshi_0082 - hypothetical protein (RefSeq), at 81,262 to 82,386 _0082 Position (kb) 80 81 82Strain fitness (log2 ratio) -3 -2 -1 0 1at 79.457 kb on + strand, within Dshi_0080at 79.597 kb on + strand, within Dshi_0080at 79.665 kb on - strand, within Dshi_0080at 79.665 kb on - strand, within Dshi_0080at 79.915 kb on + strandat 79.917 kb on + strandat 80.044 kb on + strandat 80.596 kb on + strand, within Dshi_0081at 81.250 kb on - strandat 81.344 kb on + strandat 81.352 kb on - strandat 81.357 kb on - strandat 81.375 kb on + strand, within Dshi_0082at 81.379 kb on - strand, within Dshi_0082at 81.388 kb on - strand, within Dshi_0082at 81.497 kb on + strand, within Dshi_0082at 81.603 kb on + strand, within Dshi_0082at 81.909 kb on - strand, within Dshi_0082at 81.960 kb on - strand, within Dshi_0082at 82.000 kb on + strand, within Dshi_0082at 82.000 kb on - strand, within Dshi_0082at 82.143 kb on - strand, within Dshi_0082at 82.170 kb on - strand, within Dshi_0082

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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79,457 + Dshi_0080 0.49 -0.2
79,597 + Dshi_0080 0.64 +0.3
79,665 - Dshi_0080 0.71 -0.6
79,665 - Dshi_0080 0.71 -0.8
79,915 + -1.6
79,917 + -0.8
80,044 + -1.1
80,596 + Dshi_0081 0.47 -2.0
81,250 - +0.4
81,344 + -0.6
81,352 - -0.4
81,357 - -0.8
81,375 + Dshi_0082 0.10 -1.0
81,379 - Dshi_0082 0.10 +0.0
81,388 - Dshi_0082 0.11 -0.7
81,497 + Dshi_0082 0.21 +0.5
81,603 + Dshi_0082 0.30 -1.5
81,909 - Dshi_0082 0.58 -2.9
81,960 - Dshi_0082 0.62 -0.6
82,000 + Dshi_0082 0.66 +0.7
82,000 - Dshi_0082 0.66 -0.3
82,143 - Dshi_0082 0.78 +0.7
82,170 - Dshi_0082 0.81 +1.2

Or see this region's nucleotide sequence