Strain Fitness in Shewanella oneidensis MR-1 around SO4330

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_4328 and SO4329 are separated by 116 nucleotidesSO4329 and SO4330 are separated by 168 nucleotidesSO4330 and SO4331 are separated by 59 nucleotidesSO4331 and SO4332 overlap by 4 nucleotides SO_4328: SO_4328 - no description, at 4,521,426 to 4,522,646 _4328 SO4329: SO4329 - conserved hypothetical protein (NCBI ptt file), at 4,522,763 to 4,523,017 SO4329 SO4330: SO4330 - conserved hypothetical protein (NCBI ptt file), at 4,523,186 to 4,523,518 SO4330 SO4331: SO4331 - hypothetical protein (NCBI ptt file), at 4,523,578 to 4,523,934 SO4331 SO4332: SO4332 - conserved hypothetical protein (NCBI ptt file), at 4,523,931 to 4,525,097 SO4332 Position (kb) 4523 4524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4522.242 kb on + strand, within SO_4328at 4522.320 kb on + strand, within SO_4328at 4522.367 kb on + strand, within SO_4328at 4522.367 kb on + strand, within SO_4328at 4522.367 kb on + strand, within SO_4328at 4522.493 kb on + strand, within SO_4328at 4522.632 kb on + strandat 4522.685 kb on - strandat 4523.107 kb on + strandat 4523.107 kb on + strandat 4523.107 kb on + strandat 4523.115 kb on - strandat 4523.115 kb on - strandat 4523.115 kb on - strandat 4523.115 kb on - strandat 4523.115 kb on - strandat 4523.115 kb on - strandat 4523.202 kb on + strandat 4523.216 kb on + strandat 4523.224 kb on - strand, within SO4330at 4523.226 kb on + strand, within SO4330at 4523.256 kb on + strand, within SO4330at 4523.256 kb on + strand, within SO4330at 4523.256 kb on + strand, within SO4330at 4523.304 kb on + strand, within SO4330at 4523.304 kb on + strand, within SO4330at 4523.304 kb on + strand, within SO4330at 4523.320 kb on - strand, within SO4330at 4523.333 kb on + strand, within SO4330at 4523.538 kb on + strandat 4523.566 kb on + strandat 4523.609 kb on - strandat 4523.800 kb on - strand, within SO4331at 4523.899 kb on + strandat 4523.907 kb on - strandat 4523.924 kb on + strandat 4524.046 kb on - strandat 4524.046 kb on - strandat 4524.051 kb on + strand, within SO4332at 4524.138 kb on - strand, within SO4332at 4524.315 kb on - strand, within SO4332at 4524.367 kb on + strand, within SO4332at 4524.367 kb on + strand, within SO4332at 4524.368 kb on + strand, within SO4332at 4524.368 kb on + strand, within SO4332at 4524.369 kb on - strand, within SO4332at 4524.375 kb on - strand, within SO4332at 4524.375 kb on - strand, within SO4332at 4524.375 kb on - strand, within SO4332at 4524.375 kb on - strand, within SO4332at 4524.471 kb on - strand, within SO4332at 4524.476 kb on - strand, within SO4332

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,522,242 + SO_4328 0.67 -4.1
4,522,320 + SO_4328 0.73 -2.6
4,522,367 + SO_4328 0.77 -2.8
4,522,367 + SO_4328 0.77 -3.4
4,522,367 + SO_4328 0.77 -3.2
4,522,493 + SO_4328 0.87 -2.9
4,522,632 + -3.4
4,522,685 - -0.6
4,523,107 + +0.4
4,523,107 + -1.3
4,523,107 + -0.9
4,523,115 - -0.4
4,523,115 - +0.9
4,523,115 - -0.1
4,523,115 - +0.2
4,523,115 - +0.2
4,523,115 - +0.2
4,523,202 + +0.1
4,523,216 + +0.6
4,523,224 - SO4330 0.11 +0.4
4,523,226 + SO4330 0.12 +1.5
4,523,256 + SO4330 0.21 -0.4
4,523,256 + SO4330 0.21 +0.0
4,523,256 + SO4330 0.21 +0.1
4,523,304 + SO4330 0.35 -0.2
4,523,304 + SO4330 0.35 -0.1
4,523,304 + SO4330 0.35 -0.2
4,523,320 - SO4330 0.40 -0.5
4,523,333 + SO4330 0.44 -1.3
4,523,538 + -0.1
4,523,566 + -0.6
4,523,609 - -0.1
4,523,800 - SO4331 0.62 +0.1
4,523,899 + -0.1
4,523,907 - -0.6
4,523,924 + +0.6
4,524,046 - +0.3
4,524,046 - -0.2
4,524,051 + SO4332 0.10 -1.1
4,524,138 - SO4332 0.18 -0.5
4,524,315 - SO4332 0.33 +0.5
4,524,367 + SO4332 0.37 -0.1
4,524,367 + SO4332 0.37 -0.0
4,524,368 + SO4332 0.37 -1.1
4,524,368 + SO4332 0.37 +0.6
4,524,369 - SO4332 0.38 +0.6
4,524,375 - SO4332 0.38 +0.2
4,524,375 - SO4332 0.38 +0.4
4,524,375 - SO4332 0.38 +1.1
4,524,375 - SO4332 0.38 +0.2
4,524,471 - SO4332 0.46 +0.3
4,524,476 - SO4332 0.47 +0.8

Or see this region's nucleotide sequence