Strain Fitness in Shewanella oneidensis MR-1 around SO0882

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0880 and SO0881 are separated by 111 nucleotidesSO0881 and SO0882 are separated by 46 nucleotidesSO0882 and SO0883 are separated by 12 nucleotidesSO0883 and SO0884 are separated by 51 nucleotidesSO0884 and SO0885 are separated by 83 nucleotides SO0880: SO0880 - conserved hypothetical protein (NCBI ptt file), at 909,203 to 910,186 SO0880 SO0881: SO0881 - conserved hypothetical protein (NCBI ptt file), at 910,298 to 910,804 SO0881 SO0882: SO0882 - oxidoreductase, GMC family (NCBI ptt file), at 910,851 to 912,452 SO0882 SO0883: SO0883 - conserved hypothetical protein (NCBI ptt file), at 912,465 to 912,875 SO0883 SO0884: SO0884 - conserved hypothetical protein (NCBI ptt file), at 912,927 to 913,340 SO0884 SO0885: SO0885 - ABC transporter, ATP-binding protein (NCBI ptt file), at 913,424 to 915,337 SO0885 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -2 -1 0 1at 909.892 kb on + strand, within SO0880at 909.900 kb on - strand, within SO0880at 909.910 kb on - strand, within SO0880at 909.947 kb on + strand, within SO0880at 909.955 kb on + strand, within SO0880at 909.969 kb on + strand, within SO0880at 910.083 kb on - strand, within SO0880at 910.083 kb on - strand, within SO0880at 910.083 kb on - strand, within SO0880at 910.109 kb on - strandat 910.166 kb on - strandat 910.305 kb on + strandat 910.377 kb on + strand, within SO0881at 910.377 kb on + strand, within SO0881at 910.402 kb on + strand, within SO0881at 910.545 kb on - strand, within SO0881at 910.654 kb on + strand, within SO0881at 910.752 kb on + strand, within SO0881at 910.760 kb on + strandat 910.760 kb on - strandat 910.760 kb on - strandat 910.774 kb on + strandat 910.774 kb on + strandat 910.782 kb on - strandat 910.895 kb on + strandat 910.896 kb on + strandat 910.898 kb on + strandat 911.083 kb on + strand, within SO0882at 911.219 kb on - strand, within SO0882at 911.231 kb on + strand, within SO0882at 911.239 kb on - strand, within SO0882at 911.270 kb on - strand, within SO0882at 911.283 kb on - strand, within SO0882at 911.375 kb on + strand, within SO0882at 911.393 kb on - strand, within SO0882at 911.440 kb on + strand, within SO0882at 911.467 kb on - strand, within SO0882at 911.519 kb on + strand, within SO0882at 911.633 kb on - strand, within SO0882at 911.695 kb on + strand, within SO0882at 911.730 kb on - strand, within SO0882at 911.742 kb on - strand, within SO0882at 911.747 kb on - strand, within SO0882at 911.856 kb on - strand, within SO0882at 911.862 kb on - strand, within SO0882at 911.911 kb on + strand, within SO0882at 911.964 kb on + strand, within SO0882at 912.013 kb on + strand, within SO0882at 912.072 kb on + strand, within SO0882at 912.089 kb on - strand, within SO0882at 912.175 kb on + strand, within SO0882at 912.180 kb on + strand, within SO0882at 912.220 kb on - strand, within SO0882at 912.433 kb on - strandat 912.521 kb on + strand, within SO0883at 912.545 kb on + strand, within SO0883at 912.632 kb on + strand, within SO0883at 912.941 kb on + strandat 912.941 kb on + strandat 912.949 kb on - strandat 912.980 kb on + strand, within SO0884at 912.988 kb on - strand, within SO0884at 913.028 kb on - strand, within SO0884at 913.084 kb on + strand, within SO0884at 913.129 kb on + strand, within SO0884at 913.247 kb on + strand, within SO0884at 913.309 kb on + strandat 913.312 kb on - strandat 913.312 kb on - strandat 913.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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909,892 + SO0880 0.70 -0.3
909,900 - SO0880 0.71 -0.8
909,910 - SO0880 0.72 -0.3
909,947 + SO0880 0.76 +0.2
909,955 + SO0880 0.76 +0.2
909,969 + SO0880 0.78 +0.1
910,083 - SO0880 0.89 -0.5
910,083 - SO0880 0.89 -0.0
910,083 - SO0880 0.89 -0.3
910,109 - -0.6
910,166 - -0.3
910,305 + -1.0
910,377 + SO0881 0.16 +0.0
910,377 + SO0881 0.16 -0.3
910,402 + SO0881 0.21 +0.7
910,545 - SO0881 0.49 +0.7
910,654 + SO0881 0.70 -0.1
910,752 + SO0881 0.90 -0.7
910,760 + -1.0
910,760 - -1.9
910,760 - -0.5
910,774 + -0.9
910,774 + -2.4
910,782 - -0.6
910,895 + -1.0
910,896 + -1.3
910,898 + +0.1
911,083 + SO0882 0.14 -1.2
911,219 - SO0882 0.23 -1.0
911,231 + SO0882 0.24 -0.7
911,239 - SO0882 0.24 -1.6
911,270 - SO0882 0.26 -1.1
911,283 - SO0882 0.27 -0.8
911,375 + SO0882 0.33 -0.1
911,393 - SO0882 0.34 -1.3
911,440 + SO0882 0.37 -1.0
911,467 - SO0882 0.38 -0.1
911,519 + SO0882 0.42 -0.0
911,633 - SO0882 0.49 -1.4
911,695 + SO0882 0.53 -0.2
911,730 - SO0882 0.55 -0.6
911,742 - SO0882 0.56 -0.9
911,747 - SO0882 0.56 -0.3
911,856 - SO0882 0.63 -0.9
911,862 - SO0882 0.63 -0.2
911,911 + SO0882 0.66 -0.8
911,964 + SO0882 0.69 -0.3
912,013 + SO0882 0.73 -1.3
912,072 + SO0882 0.76 -0.7
912,089 - SO0882 0.77 -1.1
912,175 + SO0882 0.83 -1.3
912,180 + SO0882 0.83 -1.3
912,220 - SO0882 0.85 -0.0
912,433 - -0.1
912,521 + SO0883 0.14 -0.1
912,545 + SO0883 0.19 -0.3
912,632 + SO0883 0.41 -0.1
912,941 + -0.1
912,941 + +0.4
912,949 - +0.5
912,980 + SO0884 0.13 -1.0
912,988 - SO0884 0.15 -0.9
913,028 - SO0884 0.24 -1.0
913,084 + SO0884 0.38 -1.8
913,129 + SO0884 0.49 -0.1
913,247 + SO0884 0.77 -1.3
913,309 + -1.9
913,312 - -1.6
913,312 - -1.0
913,385 + -0.4

Or see this region's nucleotide sequence