Strain Fitness in Shewanella oneidensis MR-1 around SO0856

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0855 and SO0856 overlap by 4 nucleotidesSO0856 and SO0857 are separated by 1 nucleotides SO0855: SO0855 - conserved hypothetical protein (NCBI ptt file), at 875,921 to 877,198 SO0855 SO0856: SO0856 - conserved hypothetical protein (NCBI ptt file), at 877,195 to 879,888 SO0856 SO0857: SO0857 - ABC transporter, ATP-binding protein (NCBI ptt file), at 879,890 to 880,561 SO0857 Position (kb) 877 878 879 880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 876.200 kb on + strand, within SO0855at 876.200 kb on + strand, within SO0855at 876.208 kb on - strand, within SO0855at 876.239 kb on - strand, within SO0855at 876.294 kb on - strandat 876.332 kb on + strand, within SO0855at 876.342 kb on + strand, within SO0855at 876.353 kb on + strand, within SO0855at 876.353 kb on + strand, within SO0855at 876.464 kb on + strand, within SO0855at 876.543 kb on - strand, within SO0855at 876.560 kb on + strand, within SO0855at 876.670 kb on - strand, within SO0855at 876.761 kb on + strand, within SO0855at 876.864 kb on - strand, within SO0855at 876.938 kb on - strand, within SO0855at 876.948 kb on + strand, within SO0855at 876.948 kb on + strand, within SO0855at 877.127 kb on + strandat 877.162 kb on - strandat 877.193 kb on + strandat 877.201 kb on - strandat 877.210 kb on - strandat 877.270 kb on + strandat 877.298 kb on + strandat 877.316 kb on - strandat 877.389 kb on - strandat 877.535 kb on - strand, within SO0856at 877.535 kb on - strand, within SO0856at 877.548 kb on + strand, within SO0856at 877.579 kb on + strand, within SO0856at 877.584 kb on + strand, within SO0856at 877.592 kb on - strand, within SO0856at 877.680 kb on - strand, within SO0856at 877.685 kb on - strand, within SO0856at 877.724 kb on + strand, within SO0856at 877.799 kb on - strand, within SO0856at 877.824 kb on - strand, within SO0856at 877.941 kb on + strand, within SO0856at 877.949 kb on - strand, within SO0856at 878.042 kb on + strand, within SO0856at 878.058 kb on - strand, within SO0856at 878.121 kb on - strand, within SO0856at 878.129 kb on - strand, within SO0856at 878.289 kb on + strand, within SO0856at 878.297 kb on - strand, within SO0856at 878.302 kb on - strand, within SO0856at 878.406 kb on + strand, within SO0856at 878.440 kb on + strand, within SO0856at 878.498 kb on - strand, within SO0856at 878.506 kb on + strand, within SO0856at 878.554 kb on + strand, within SO0856at 878.562 kb on - strand, within SO0856at 878.617 kb on - strand, within SO0856at 878.647 kb on + strand, within SO0856at 878.647 kb on + strand, within SO0856at 878.697 kb on + strand, within SO0856at 878.697 kb on + strand, within SO0856at 878.724 kb on - strand, within SO0856at 878.755 kb on + strand, within SO0856at 878.765 kb on + strand, within SO0856at 878.765 kb on + strand, within SO0856at 878.765 kb on + strand, within SO0856at 878.765 kb on + strand, within SO0856at 878.765 kb on + strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.773 kb on - strand, within SO0856at 878.775 kb on + strand, within SO0856at 878.775 kb on + strand, within SO0856at 878.775 kb on + strand, within SO0856at 878.799 kb on + strand, within SO0856at 878.799 kb on + strand, within SO0856at 878.801 kb on - strand, within SO0856at 878.807 kb on - strand, within SO0856at 878.825 kb on - strand, within SO0856at 878.891 kb on - strand, within SO0856at 878.955 kb on + strand, within SO0856at 879.093 kb on + strand, within SO0856at 879.148 kb on - strand, within SO0856at 879.289 kb on + strand, within SO0856at 879.294 kb on + strand, within SO0856at 879.370 kb on + strand, within SO0856at 879.378 kb on - strand, within SO0856at 879.378 kb on - strand, within SO0856at 879.393 kb on + strand, within SO0856at 879.418 kb on - strand, within SO0856at 879.469 kb on + strand, within SO0856at 879.573 kb on + strand, within SO0856at 879.581 kb on - strand, within SO0856at 879.581 kb on - strand, within SO0856at 879.626 kb on - strandat 879.658 kb on - strandat 879.658 kb on - strandat 879.718 kb on - strandat 879.763 kb on + strandat 879.912 kb on + strandat 879.938 kb on + strandat 879.945 kb on - strandat 880.012 kb on + strand, within SO0857at 880.025 kb on - strand, within SO0857at 880.148 kb on - strand, within SO0857at 880.212 kb on - strand, within SO0857at 880.318 kb on - strand, within SO0857at 880.358 kb on + strand, within SO0857at 880.366 kb on - strand, within SO0857at 880.386 kb on + strand, within SO0857at 880.386 kb on + strand, within SO0857at 880.455 kb on + strand, within SO0857at 880.463 kb on - strand, within SO0857at 880.497 kb on + strandat 880.497 kb on + strandat 880.497 kb on + strandat 880.497 kb on + strandat 880.500 kb on - strandat 880.505 kb on - strandat 880.505 kb on - strandat 880.643 kb on - strandat 880.668 kb on + strandat 880.681 kb on + strandat 880.750 kb on - strandat 880.752 kb on + strandat 880.828 kb on + strandat 880.830 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
876,200 + SO0855 0.22 -0.8
876,200 + SO0855 0.22 -0.4
876,208 - SO0855 0.22 +0.0
876,239 - SO0855 0.25 +0.7
876,294 - -0.3
876,332 + SO0855 0.32 +0.5
876,342 + SO0855 0.33 -0.3
876,353 + SO0855 0.34 -0.2
876,353 + SO0855 0.34 +0.6
876,464 + SO0855 0.42 +0.4
876,543 - SO0855 0.49 -2.7
876,560 + SO0855 0.50 -0.7
876,670 - SO0855 0.59 -1.2
876,761 + SO0855 0.66 -0.6
876,864 - SO0855 0.74 -0.8
876,938 - SO0855 0.80 -0.3
876,948 + SO0855 0.80 -0.9
876,948 + SO0855 0.80 -0.5
877,127 + -0.8
877,162 - +1.0
877,193 + -0.5
877,201 - -0.0
877,210 - +0.2
877,270 + -0.2
877,298 + -0.2
877,316 - +0.2
877,389 - -1.3
877,535 - SO0856 0.13 +0.3
877,535 - SO0856 0.13 +0.2
877,548 + SO0856 0.13 -0.2
877,579 + SO0856 0.14 -0.5
877,584 + SO0856 0.14 +1.7
877,592 - SO0856 0.15 -0.5
877,680 - SO0856 0.18 +0.2
877,685 - SO0856 0.18 -1.5
877,724 + SO0856 0.20 +1.1
877,799 - SO0856 0.22 -0.0
877,824 - SO0856 0.23 +0.1
877,941 + SO0856 0.28 -0.3
877,949 - SO0856 0.28 +1.1
878,042 + SO0856 0.31 -0.8
878,058 - SO0856 0.32 -0.9
878,121 - SO0856 0.34 +0.0
878,129 - SO0856 0.35 -1.0
878,289 + SO0856 0.41 -0.6
878,297 - SO0856 0.41 -0.7
878,302 - SO0856 0.41 +0.0
878,406 + SO0856 0.45 -0.7
878,440 + SO0856 0.46 +1.0
878,498 - SO0856 0.48 -0.7
878,506 + SO0856 0.49 +0.0
878,554 + SO0856 0.50 -0.3
878,562 - SO0856 0.51 -0.4
878,617 - SO0856 0.53 -0.6
878,647 + SO0856 0.54 +0.4
878,647 + SO0856 0.54 -0.1
878,697 + SO0856 0.56 +0.3
878,697 + SO0856 0.56 -0.1
878,724 - SO0856 0.57 +0.0
878,755 + SO0856 0.58 +0.0
878,765 + SO0856 0.58 +1.0
878,765 + SO0856 0.58 +0.2
878,765 + SO0856 0.58 -0.5
878,765 + SO0856 0.58 -0.1
878,765 + SO0856 0.58 -0.2
878,773 - SO0856 0.59 +0.0
878,773 - SO0856 0.59 +0.2
878,773 - SO0856 0.59 -1.3
878,773 - SO0856 0.59 +1.5
878,773 - SO0856 0.59 -0.5
878,773 - SO0856 0.59 -0.4
878,775 + SO0856 0.59 -0.7
878,775 + SO0856 0.59 -3.9
878,775 + SO0856 0.59 +0.1
878,799 + SO0856 0.60 -0.6
878,799 + SO0856 0.60 +0.2
878,801 - SO0856 0.60 +0.2
878,807 - SO0856 0.60 -0.8
878,825 - SO0856 0.61 +0.5
878,891 - SO0856 0.63 -0.7
878,955 + SO0856 0.65 -1.7
879,093 + SO0856 0.70 -0.3
879,148 - SO0856 0.72 -0.3
879,289 + SO0856 0.78 +0.0
879,294 + SO0856 0.78 +0.2
879,370 + SO0856 0.81 -0.9
879,378 - SO0856 0.81 -0.0
879,378 - SO0856 0.81 -0.1
879,393 + SO0856 0.82 +0.7
879,418 - SO0856 0.83 -0.4
879,469 + SO0856 0.84 +0.7
879,573 + SO0856 0.88 -0.9
879,581 - SO0856 0.89 -1.0
879,581 - SO0856 0.89 -0.4
879,626 - -2.1
879,658 - -1.5
879,658 - +0.0
879,718 - +2.3
879,763 + -1.6
879,912 + -0.2
879,938 + +0.1
879,945 - -3.4
880,012 + SO0857 0.18 -0.5
880,025 - SO0857 0.20 -0.4
880,148 - SO0857 0.38 +0.9
880,212 - SO0857 0.48 +0.1
880,318 - SO0857 0.64 -0.6
880,358 + SO0857 0.70 -0.6
880,366 - SO0857 0.71 +0.4
880,386 + SO0857 0.74 -0.6
880,386 + SO0857 0.74 +0.2
880,455 + SO0857 0.84 +0.2
880,463 - SO0857 0.85 -0.4
880,497 + +1.0
880,497 + -0.4
880,497 + -0.2
880,497 + +0.1
880,500 - -1.1
880,505 - -0.3
880,505 - -0.3
880,643 - -0.1
880,668 + +0.2
880,681 + +0.2
880,750 - +0.5
880,752 + +0.3
880,828 + -0.1
880,830 - +0.7

Or see this region's nucleotide sequence