Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0820 and SO0821 are separated by 2 nucleotides SO0821 and SO0822 are separated by 4 nucleotides
SO0820: SO0820 - HlyD family secretion protein (NCBI ptt file), at 834,972 to 836,189
SO0820
SO0821: SO0821 - ABC transporter, ATP-binding/permease protein (NCBI ptt file), at 836,192 to 838,162
SO0821
SO0822: SO0822 - outer membrane efflux family protein (NCBI ptt file), at 838,167 to 839,585
SO0822
Position (kb) 836
837
838
839 Strain fitness (log2 ratio) -1
0
1
2 at 835.203 kb on - strand, within SO0820 at 835.308 kb on + strand at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.308 kb on + strand, within SO0820 at 835.311 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.316 kb on - strand, within SO0820 at 835.544 kb on - strand, within SO0820 at 835.553 kb on + strand, within SO0820 at 835.559 kb on - strand, within SO0820 at 835.575 kb on + strand, within SO0820 at 835.582 kb on + strand, within SO0820 at 835.728 kb on - strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.744 kb on + strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.752 kb on - strand, within SO0820 at 835.753 kb on + strand, within SO0820 at 835.833 kb on + strand, within SO0820 at 835.889 kb on + strand, within SO0820 at 835.918 kb on - strand, within SO0820 at 835.923 kb on + strand, within SO0820 at 835.925 kb on + strand, within SO0820 at 835.956 kb on - strand, within SO0820 at 835.961 kb on + strand, within SO0820 at 836.113 kb on + strand at 836.121 kb on - strand at 836.202 kb on - strand at 836.232 kb on + strand at 836.301 kb on - strand at 836.319 kb on + strand at 836.342 kb on - strand at 836.359 kb on - strand at 836.399 kb on + strand, within SO0821 at 836.519 kb on - strand, within SO0821 at 836.555 kb on + strand, within SO0821 at 836.555 kb on + strand, within SO0821 at 836.626 kb on + strand, within SO0821 at 836.850 kb on + strand, within SO0821 at 836.858 kb on - strand, within SO0821 at 836.877 kb on - strand, within SO0821 at 836.906 kb on + strand, within SO0821 at 836.909 kb on + strand, within SO0821 at 836.917 kb on - strand, within SO0821 at 836.939 kb on + strand, within SO0821 at 836.969 kb on - strand, within SO0821 at 837.095 kb on - strand, within SO0821 at 837.152 kb on + strand, within SO0821 at 837.152 kb on + strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.160 kb on - strand, within SO0821 at 837.177 kb on + strand, within SO0821 at 837.192 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.243 kb on + strand, within SO0821 at 837.255 kb on + strand, within SO0821 at 837.277 kb on + strand, within SO0821 at 837.450 kb on + strand, within SO0821 at 837.470 kb on + strand, within SO0821 at 837.496 kb on + strand, within SO0821 at 837.651 kb on - strand, within SO0821 at 837.684 kb on - strand, within SO0821 at 837.689 kb on - strand, within SO0821 at 837.699 kb on - strand, within SO0821 at 837.790 kb on - strand, within SO0821 at 837.810 kb on + strand, within SO0821 at 837.820 kb on + strand, within SO0821 at 837.833 kb on - strand, within SO0821 at 837.840 kb on + strand, within SO0821 at 837.952 kb on - strand, within SO0821 at 837.980 kb on + strand at 837.980 kb on + strand at 837.980 kb on + strand at 837.988 kb on - strand at 838.179 kb on + strand at 838.209 kb on + strand at 838.215 kb on - strand at 838.215 kb on - strand at 838.234 kb on + strand at 838.237 kb on + strand at 838.237 kb on + strand at 838.242 kb on - strand at 838.300 kb on + strand at 838.300 kb on + strand at 838.484 kb on + strand, within SO0822 at 838.489 kb on + strand, within SO0822 at 838.491 kb on + strand, within SO0822 at 838.492 kb on - strand, within SO0822 at 838.582 kb on + strand, within SO0822 at 838.588 kb on + strand, within SO0822 at 838.590 kb on - strand, within SO0822 at 838.616 kb on - strand, within SO0822 at 838.646 kb on + strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.654 kb on - strand, within SO0822 at 838.674 kb on + strand, within SO0822 at 838.735 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.781 kb on + strand, within SO0822 at 838.789 kb on - strand, within SO0822 at 838.832 kb on + strand, within SO0822 at 838.968 kb on + strand, within SO0822
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 835,203 - SO0820 0.19 +0.6 835,308 + +0.8 835,308 + SO0820 0.28 +0.1 835,308 + SO0820 0.28 +2.4 835,308 + SO0820 0.28 +2.4 835,308 + SO0820 0.28 +0.3 835,311 - SO0820 0.28 -0.2 835,316 - SO0820 0.28 +0.2 835,316 - SO0820 0.28 -0.4 835,316 - SO0820 0.28 +0.2 835,316 - SO0820 0.28 +0.6 835,316 - SO0820 0.28 +0.2 835,544 - SO0820 0.47 +1.0 835,553 + SO0820 0.48 +0.2 835,559 - SO0820 0.48 +0.7 835,575 + SO0820 0.50 +1.6 835,582 + SO0820 0.50 +0.5 835,728 - SO0820 0.62 +0.1 835,744 + SO0820 0.63 -0.7 835,744 + SO0820 0.63 -0.8 835,744 + SO0820 0.63 -0.7 835,752 - SO0820 0.64 +0.8 835,752 - SO0820 0.64 -0.5 835,752 - SO0820 0.64 -0.1 835,752 - SO0820 0.64 +0.3 835,753 + SO0820 0.64 -0.2 835,833 + SO0820 0.71 -0.9 835,889 + SO0820 0.75 -0.3 835,918 - SO0820 0.78 -0.0 835,923 + SO0820 0.78 +0.9 835,925 + SO0820 0.78 +0.1 835,956 - SO0820 0.81 -0.4 835,961 + SO0820 0.81 -0.2 836,113 + +0.4 836,121 - -0.2 836,202 - -1.2 836,232 + -0.8 836,301 - +0.6 836,319 + -0.3 836,342 - +0.2 836,359 - +0.6 836,399 + SO0821 0.11 -0.1 836,519 - SO0821 0.17 +1.8 836,555 + SO0821 0.18 -0.0 836,555 + SO0821 0.18 -0.5 836,626 + SO0821 0.22 +0.5 836,850 + SO0821 0.33 +0.0 836,858 - SO0821 0.34 -1.4 836,877 - SO0821 0.35 -0.3 836,906 + SO0821 0.36 +0.4 836,909 + SO0821 0.36 -0.1 836,917 - SO0821 0.37 -0.0 836,939 + SO0821 0.38 -0.2 836,969 - SO0821 0.39 +1.2 837,095 - SO0821 0.46 -0.6 837,152 + SO0821 0.49 +1.0 837,152 + SO0821 0.49 -0.5 837,160 - SO0821 0.49 +0.3 837,160 - SO0821 0.49 -0.1 837,160 - SO0821 0.49 -0.6 837,160 - SO0821 0.49 -0.0 837,177 + SO0821 0.50 +0.7 837,192 + SO0821 0.51 -0.9 837,243 + SO0821 0.53 +1.5 837,243 + SO0821 0.53 +0.9 837,243 + SO0821 0.53 +0.2 837,243 + SO0821 0.53 -1.1 837,255 + SO0821 0.54 +0.4 837,277 + SO0821 0.55 -0.5 837,450 + SO0821 0.64 +0.2 837,470 + SO0821 0.65 +0.1 837,496 + SO0821 0.66 -0.7 837,651 - SO0821 0.74 -1.1 837,684 - SO0821 0.76 -0.1 837,689 - SO0821 0.76 +0.3 837,699 - SO0821 0.76 +1.0 837,790 - SO0821 0.81 -0.4 837,810 + SO0821 0.82 -0.2 837,820 + SO0821 0.83 +0.2 837,833 - SO0821 0.83 +0.4 837,840 + SO0821 0.84 +0.2 837,952 - SO0821 0.89 +0.5 837,980 + +0.7 837,980 + -0.0 837,980 + +0.3 837,988 - -0.2 838,179 + -0.2 838,209 + +0.2 838,215 - +0.4 838,215 - -0.0 838,234 + +0.1 838,237 + -0.1 838,237 + -1.1 838,242 - +1.0 838,300 + +0.2 838,300 + -0.8 838,484 + SO0822 0.22 -0.3 838,489 + SO0822 0.23 -0.4 838,491 + SO0822 0.23 +1.1 838,492 - SO0822 0.23 +0.0 838,582 + SO0822 0.29 -0.3 838,588 + SO0822 0.30 +0.8 838,590 - SO0822 0.30 -0.3 838,616 - SO0822 0.32 +0.2 838,646 + SO0822 0.34 +0.3 838,654 - SO0822 0.34 +0.3 838,654 - SO0822 0.34 +0.5 838,674 + SO0822 0.36 +0.2 838,735 + SO0822 0.40 -0.1 838,781 + SO0822 0.43 +0.4 838,781 + SO0822 0.43 +0.6 838,789 - SO0822 0.44 +0.3 838,832 + SO0822 0.47 +1.0 838,968 + SO0822 0.56 -0.1
Or see this region's nucleotide sequence