Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0515 and SO0516 are separated by 119 nucleotides SO0516 and SO0518 are separated by 215 nucleotides SO0518 and SO0519 are separated by 5 nucleotides
SO0515: SO0515 - hypothetical protein (NCBI ptt file), at 538,008 to 538,211
SO0515
SO0516: SO0516 - hypothetical protein (NCBI ptt file), at 538,331 to 538,813
SO0516
SO0518: SO0518 - outer membrane efflux family protein, putative (NCBI ptt file), at 539,029 to 540,387
SO0518
SO0519: SO0519 - cation efflux protein, putative (NCBI ptt file), at 540,393 to 541,694
SO0519
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 538.038 kb on - strand, within SO0515 at 538.068 kb on + strand, within SO0515 at 538.076 kb on - strand, within SO0515 at 538.085 kb on + strand, within SO0515 at 538.107 kb on + strand, within SO0515 at 538.107 kb on + strand, within SO0515 at 538.110 kb on - strand, within SO0515 at 538.188 kb on + strand, within SO0515 at 538.305 kb on - strand at 538.441 kb on - strand, within SO0516 at 538.493 kb on + strand, within SO0516 at 538.493 kb on + strand, within SO0516 at 538.688 kb on + strand, within SO0516 at 538.688 kb on + strand, within SO0516 at 538.765 kb on - strand at 538.903 kb on - strand at 538.915 kb on + strand at 538.927 kb on + strand at 539.087 kb on + strand at 539.164 kb on - strand at 539.285 kb on + strand, within SO0518 at 539.327 kb on + strand, within SO0518 at 539.327 kb on + strand, within SO0518 at 539.383 kb on - strand, within SO0518 at 539.530 kb on + strand, within SO0518 at 539.554 kb on - strand, within SO0518 at 539.573 kb on + strand, within SO0518 at 539.583 kb on + strand, within SO0518 at 539.583 kb on + strand, within SO0518 at 539.591 kb on - strand, within SO0518 at 539.591 kb on - strand, within SO0518 at 539.625 kb on - strand, within SO0518 at 539.719 kb on - strand, within SO0518 at 539.743 kb on - strand, within SO0518 at 539.758 kb on - strand, within SO0518 at 539.802 kb on - strand, within SO0518 at 539.818 kb on + strand, within SO0518 at 539.879 kb on - strand, within SO0518 at 539.879 kb on - strand, within SO0518 at 539.885 kb on - strand, within SO0518 at 539.970 kb on - strand, within SO0518 at 539.989 kb on + strand, within SO0518 at 539.997 kb on - strand, within SO0518 at 539.997 kb on - strand, within SO0518 at 540.033 kb on + strand, within SO0518 at 540.036 kb on - strand, within SO0518 at 540.036 kb on - strand, within SO0518 at 540.088 kb on + strand, within SO0518 at 540.096 kb on - strand, within SO0518 at 540.096 kb on - strand, within SO0518 at 540.141 kb on - strand, within SO0518 at 540.284 kb on + strand at 540.291 kb on - strand at 540.291 kb on - strand at 540.293 kb on + strand at 540.308 kb on + strand at 540.388 kb on + strand at 540.452 kb on + strand at 540.452 kb on + strand at 540.457 kb on - strand at 540.460 kb on - strand at 540.460 kb on - strand at 540.470 kb on - strand at 540.633 kb on + strand, within SO0519 at 540.633 kb on + strand, within SO0519 at 540.641 kb on + strand, within SO0519 at 540.641 kb on - strand, within SO0519 at 540.641 kb on - strand, within SO0519 at 540.648 kb on - strand, within SO0519 at 540.656 kb on + strand, within SO0519 at 540.673 kb on - strand, within SO0519 at 540.684 kb on + strand, within SO0519 at 540.684 kb on + strand, within SO0519 at 540.684 kb on + strand, within SO0519 at 540.692 kb on - strand, within SO0519 at 540.700 kb on + strand, within SO0519 at 540.782 kb on - strand, within SO0519 at 540.787 kb on + strand, within SO0519 at 540.795 kb on - strand, within SO0519 at 540.826 kb on + strand, within SO0519 at 540.868 kb on + strand, within SO0519 at 540.876 kb on - strand, within SO0519 at 540.898 kb on - strand, within SO0519 at 540.915 kb on + strand, within SO0519 at 540.923 kb on - strand, within SO0519 at 540.923 kb on - strand, within SO0519 at 540.938 kb on - strand, within SO0519 at 540.988 kb on - strand, within SO0519 at 540.990 kb on + strand, within SO0519 at 541.052 kb on - strand, within SO0519 at 541.058 kb on + strand, within SO0519 at 541.105 kb on - strand, within SO0519 at 541.123 kb on - strand, within SO0519 at 541.123 kb on - strand, within SO0519 at 541.128 kb on - strand, within SO0519 at 541.233 kb on - strand, within SO0519 at 541.245 kb on + strand, within SO0519 at 541.245 kb on + strand, within SO0519 at 541.245 kb on + strand, within SO0519 at 541.253 kb on - strand, within SO0519 at 541.310 kb on - strand, within SO0519 at 541.312 kb on + strand, within SO0519 at 541.312 kb on + strand, within SO0519 at 541.320 kb on - strand, within SO0519 at 541.340 kb on - strand, within SO0519 at 541.340 kb on - strand, within SO0519
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 538,038 - SO0515 0.15 +0.1 538,068 + SO0515 0.29 +0.3 538,076 - SO0515 0.33 +1.1 538,085 + SO0515 0.38 -0.5 538,107 + SO0515 0.49 +1.2 538,107 + SO0515 0.49 -0.2 538,110 - SO0515 0.50 +0.7 538,188 + SO0515 0.88 -1.8 538,305 - -0.7 538,441 - SO0516 0.23 +0.3 538,493 + SO0516 0.34 +0.4 538,493 + SO0516 0.34 -0.1 538,688 + SO0516 0.74 -1.4 538,688 + SO0516 0.74 +0.6 538,765 - -0.3 538,903 - -0.1 538,915 + +0.5 538,927 + -0.1 539,087 + +0.7 539,164 - +0.5 539,285 + SO0518 0.19 +0.3 539,327 + SO0518 0.22 -1.2 539,327 + SO0518 0.22 -1.0 539,383 - SO0518 0.26 -0.4 539,530 + SO0518 0.37 -0.2 539,554 - SO0518 0.39 -0.1 539,573 + SO0518 0.40 +0.4 539,583 + SO0518 0.41 +0.5 539,583 + SO0518 0.41 +0.4 539,591 - SO0518 0.41 -0.2 539,591 - SO0518 0.41 +0.2 539,625 - SO0518 0.44 +0.8 539,719 - SO0518 0.51 +7.3 539,743 - SO0518 0.53 +0.8 539,758 - SO0518 0.54 +0.2 539,802 - SO0518 0.57 -0.3 539,818 + SO0518 0.58 -0.7 539,879 - SO0518 0.63 -0.5 539,879 - SO0518 0.63 +0.6 539,885 - SO0518 0.63 -0.1 539,970 - SO0518 0.69 -0.1 539,989 + SO0518 0.71 +0.0 539,997 - SO0518 0.71 +0.9 539,997 - SO0518 0.71 -1.6 540,033 + SO0518 0.74 +0.5 540,036 - SO0518 0.74 +0.9 540,036 - SO0518 0.74 +0.5 540,088 + SO0518 0.78 +0.3 540,096 - SO0518 0.79 +0.1 540,096 - SO0518 0.79 +0.3 540,141 - SO0518 0.82 +0.0 540,284 + -0.6 540,291 - +0.3 540,291 - -0.4 540,293 + +0.0 540,308 + -0.2 540,388 + -1.1 540,452 + +0.6 540,452 + -1.1 540,457 - +0.2 540,460 - +0.5 540,460 - +0.5 540,470 - +2.7 540,633 + SO0519 0.18 +1.9 540,633 + SO0519 0.18 -0.2 540,641 + SO0519 0.19 -0.3 540,641 - SO0519 0.19 +0.3 540,641 - SO0519 0.19 +0.5 540,648 - SO0519 0.20 -1.0 540,656 + SO0519 0.20 +1.2 540,673 - SO0519 0.22 -0.1 540,684 + SO0519 0.22 +0.3 540,684 + SO0519 0.22 +1.3 540,684 + SO0519 0.22 +0.2 540,692 - SO0519 0.23 +0.4 540,700 + SO0519 0.24 -0.8 540,782 - SO0519 0.30 +0.7 540,787 + SO0519 0.30 -0.1 540,795 - SO0519 0.31 +0.0 540,826 + SO0519 0.33 -0.4 540,868 + SO0519 0.36 +0.6 540,876 - SO0519 0.37 -0.2 540,898 - SO0519 0.39 -0.5 540,915 + SO0519 0.40 -0.2 540,923 - SO0519 0.41 -0.2 540,923 - SO0519 0.41 -0.3 540,938 - SO0519 0.42 +2.5 540,988 - SO0519 0.46 +0.3 540,990 + SO0519 0.46 -0.4 541,052 - SO0519 0.51 -0.1 541,058 + SO0519 0.51 -0.2 541,105 - SO0519 0.55 +0.1 541,123 - SO0519 0.56 +1.2 541,123 - SO0519 0.56 -0.7 541,128 - SO0519 0.56 +0.4 541,233 - SO0519 0.65 -0.5 541,245 + SO0519 0.65 +0.6 541,245 + SO0519 0.65 +0.3 541,245 + SO0519 0.65 -0.2 541,253 - SO0519 0.66 +0.1 541,310 - SO0519 0.70 +0.4 541,312 + SO0519 0.71 +0.3 541,312 + SO0519 0.71 +0.7 541,320 - SO0519 0.71 +0.9 541,340 - SO0519 0.73 -0.9 541,340 - SO0519 0.73 -0.1
Or see this region's nucleotide sequence