Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fadB and pepQ are separated by 425 nucleotides pepQ and SO0023 are separated by 15 nucleotides SO0023 and trkH-1 are separated by 77 nucleotides
SO0021: fadB - fatty oxidation complex, alpha subunit (NCBI ptt file), at 24,493 to 26,643
fadB
SO0022: pepQ - prolidase (NCBI ptt file), at 27,069 to 28,388
pepQ
SO0023: SO0023 - conserved hypothetical protein TIGR00257 (NCBI ptt file), at 28,404 to 29,018
SO0023
SO0024: trkH-1 - potassium uptake protein TrkH (NCBI ptt file), at 29,096 to 30,556
trkH-1
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 26.111 kb on - strand, within fadB at 26.135 kb on - strand, within fadB at 26.136 kb on - strand, within fadB at 26.156 kb on - strand, within fadB at 26.156 kb on - strand, within fadB at 26.173 kb on - strand, within fadB at 26.184 kb on + strand, within fadB at 26.203 kb on + strand, within fadB at 26.203 kb on + strand, within fadB at 26.251 kb on + strand, within fadB at 26.251 kb on + strand, within fadB at 26.269 kb on - strand, within fadB at 26.320 kb on + strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.374 kb on - strand, within fadB at 26.376 kb on + strand, within fadB at 26.376 kb on + strand, within fadB at 26.379 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.384 kb on - strand, within fadB at 26.389 kb on + strand, within fadB at 26.392 kb on - strand, within fadB at 26.394 kb on + strand, within fadB at 26.399 kb on + strand, within fadB at 26.399 kb on + strand, within fadB at 26.436 kb on + strand at 26.458 kb on + strand at 26.510 kb on - strand at 26.512 kb on + strand at 26.520 kb on - strand at 26.528 kb on + strand at 26.538 kb on + strand at 26.594 kb on - strand at 26.668 kb on - strand at 26.713 kb on - strand at 26.741 kb on + strand at 26.741 kb on + strand at 26.836 kb on + strand at 26.841 kb on + strand at 26.846 kb on + strand at 26.846 kb on + strand at 26.846 kb on + strand at 26.853 kb on + strand at 26.853 kb on + strand at 26.853 kb on + strand at 26.854 kb on - strand at 26.861 kb on - strand at 26.861 kb on - strand at 26.874 kb on - strand at 26.961 kb on + strand at 26.963 kb on - strand at 27.022 kb on - strand at 27.058 kb on + strand at 27.066 kb on - strand at 27.069 kb on + strand at 27.081 kb on + strand at 27.081 kb on + strand at 27.169 kb on + strand at 27.240 kb on - strand, within pepQ at 27.244 kb on + strand, within pepQ at 27.252 kb on + strand, within pepQ at 27.306 kb on - strand, within pepQ at 27.324 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.362 kb on + strand, within pepQ at 27.370 kb on - strand, within pepQ at 27.370 kb on - strand, within pepQ at 27.395 kb on + strand, within pepQ at 27.403 kb on - strand, within pepQ at 27.403 kb on - strand, within pepQ at 27.461 kb on + strand, within pepQ at 27.463 kb on + strand, within pepQ at 27.469 kb on - strand, within pepQ at 27.471 kb on - strand, within pepQ at 27.670 kb on - strand, within pepQ at 27.681 kb on - strand, within pepQ at 27.683 kb on + strand, within pepQ at 27.751 kb on - strand, within pepQ at 27.751 kb on - strand, within pepQ at 27.762 kb on - strand, within pepQ at 27.764 kb on + strand, within pepQ at 27.834 kb on - strand, within pepQ at 27.850 kb on - strand, within pepQ at 27.873 kb on + strand, within pepQ at 27.883 kb on - strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.885 kb on + strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.893 kb on - strand, within pepQ at 27.898 kb on - strand, within pepQ at 27.919 kb on - strand, within pepQ at 27.998 kb on - strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.014 kb on + strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.022 kb on - strand, within pepQ at 28.071 kb on - strand, within pepQ at 28.074 kb on + strand, within pepQ at 28.111 kb on + strand, within pepQ at 28.137 kb on - strand, within pepQ at 28.141 kb on + strand, within pepQ at 28.212 kb on + strand, within pepQ at 28.293 kb on - strand at 28.303 kb on - strand at 28.354 kb on - strand at 28.388 kb on + strand at 28.414 kb on - strand at 28.414 kb on - strand at 28.417 kb on + strand at 28.458 kb on + strand at 28.463 kb on - strand at 28.469 kb on + strand, within SO0023 at 28.498 kb on + strand, within SO0023 at 28.538 kb on + strand, within SO0023 at 28.617 kb on - strand, within SO0023 at 28.647 kb on + strand, within SO0023 at 28.688 kb on + strand, within SO0023 at 28.698 kb on + strand, within SO0023 at 28.720 kb on + strand, within SO0023 at 28.728 kb on - strand, within SO0023 at 28.740 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.759 kb on + strand, within SO0023 at 28.764 kb on + strand, within SO0023 at 28.778 kb on - strand, within SO0023 at 28.814 kb on - strand, within SO0023 at 28.962 kb on + strand at 28.965 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.977 kb on + strand at 28.983 kb on + strand at 28.985 kb on - strand at 28.986 kb on - strand at 28.991 kb on - strand at 29.005 kb on + strand at 29.005 kb on + strand at 29.096 kb on + strand at 29.096 kb on + strand at 29.143 kb on + strand at 29.251 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.320 kb on + strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.328 kb on - strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.330 kb on + strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.338 kb on - strand, within trkH-1 at 29.378 kb on + strand, within trkH-1
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 26,111 - fadB SO0021 0.75 +0.4 26,135 - fadB SO0021 0.76 -0.4 26,136 - fadB SO0021 0.76 -0.7 26,156 - fadB SO0021 0.77 -0.2 26,156 - fadB SO0021 0.77 +0.1 26,173 - fadB SO0021 0.78 -0.3 26,184 + fadB SO0021 0.79 +0.2 26,203 + fadB SO0021 0.79 +1.4 26,203 + fadB SO0021 0.79 +0.8 26,251 + fadB SO0021 0.82 +0.0 26,251 + fadB SO0021 0.82 +0.3 26,269 - fadB SO0021 0.83 +0.5 26,320 + fadB SO0021 0.85 +0.3 26,374 - fadB SO0021 0.87 -0.2 26,374 - fadB SO0021 0.87 +0.6 26,374 - fadB SO0021 0.87 -0.1 26,374 - fadB SO0021 0.87 +0.5 26,376 + fadB SO0021 0.88 +0.8 26,376 + fadB SO0021 0.88 +0.2 26,379 - fadB SO0021 0.88 +0.4 26,384 - fadB SO0021 0.88 +0.3 26,384 - fadB SO0021 0.88 +0.7 26,384 - fadB SO0021 0.88 +1.6 26,389 + fadB SO0021 0.88 -0.3 26,392 - fadB SO0021 0.88 +0.1 26,394 + fadB SO0021 0.88 +0.9 26,399 + fadB SO0021 0.89 -0.1 26,399 + fadB SO0021 0.89 +0.1 26,436 + +0.5 26,458 + +0.1 26,510 - +0.2 26,512 + -0.1 26,520 - -0.1 26,528 + +0.5 26,538 + +0.4 26,594 - +1.8 26,668 - -1.1 26,713 - +0.1 26,741 + +0.3 26,741 + -0.0 26,836 + -0.6 26,841 + +0.8 26,846 + +0.6 26,846 + +0.2 26,846 + -0.2 26,853 + -0.5 26,853 + -0.2 26,853 + +0.5 26,854 - -0.2 26,861 - -0.4 26,861 - +0.7 26,874 - -0.0 26,961 + +0.5 26,963 - -0.4 27,022 - +0.9 27,058 + -0.1 27,066 - +0.1 27,069 + +4.1 27,081 + -0.0 27,081 + -0.1 27,169 + +2.1 27,240 - pepQ SO0022 0.13 +0.1 27,244 + pepQ SO0022 0.13 +1.3 27,252 + pepQ SO0022 0.14 -1.4 27,306 - pepQ SO0022 0.18 -0.4 27,324 + pepQ SO0022 0.19 +0.1 27,362 + pepQ SO0022 0.22 -0.9 27,362 + pepQ SO0022 0.22 +0.1 27,362 + pepQ SO0022 0.22 -0.5 27,362 + pepQ SO0022 0.22 -1.0 27,362 + pepQ SO0022 0.22 +0.1 27,362 + pepQ SO0022 0.22 -0.8 27,362 + pepQ SO0022 0.22 -0.3 27,362 + pepQ SO0022 0.22 -0.0 27,362 + pepQ SO0022 0.22 -0.3 27,370 - pepQ SO0022 0.23 +0.4 27,370 - pepQ SO0022 0.23 -0.9 27,395 + pepQ SO0022 0.25 -0.1 27,403 - pepQ SO0022 0.25 +0.3 27,403 - pepQ SO0022 0.25 +1.8 27,461 + pepQ SO0022 0.30 -0.6 27,463 + pepQ SO0022 0.30 -0.7 27,469 - pepQ SO0022 0.30 -0.4 27,471 - pepQ SO0022 0.30 +0.5 27,670 - pepQ SO0022 0.46 -0.4 27,681 - pepQ SO0022 0.46 -0.2 27,683 + pepQ SO0022 0.47 -1.5 27,751 - pepQ SO0022 0.52 -1.1 27,751 - pepQ SO0022 0.52 +0.1 27,762 - pepQ SO0022 0.53 -0.2 27,764 + pepQ SO0022 0.53 -0.8 27,834 - pepQ SO0022 0.58 -0.4 27,850 - pepQ SO0022 0.59 -1.8 27,873 + pepQ SO0022 0.61 -0.4 27,883 - pepQ SO0022 0.62 -0.9 27,885 + pepQ SO0022 0.62 -1.4 27,885 + pepQ SO0022 0.62 +0.7 27,885 + pepQ SO0022 0.62 -0.3 27,893 - pepQ SO0022 0.62 -0.1 27,893 - pepQ SO0022 0.62 -2.6 27,893 - pepQ SO0022 0.62 +0.4 27,898 - pepQ SO0022 0.63 -0.0 27,919 - pepQ SO0022 0.64 -0.1 27,998 - pepQ SO0022 0.70 +0.2 28,014 + pepQ SO0022 0.72 -1.4 28,014 + pepQ SO0022 0.72 -0.1 28,014 + pepQ SO0022 0.72 -0.1 28,014 + pepQ SO0022 0.72 -1.9 28,022 - pepQ SO0022 0.72 +0.5 28,022 - pepQ SO0022 0.72 -0.8 28,022 - pepQ SO0022 0.72 -0.5 28,022 - pepQ SO0022 0.72 -0.1 28,022 - pepQ SO0022 0.72 -0.4 28,022 - pepQ SO0022 0.72 +0.1 28,022 - pepQ SO0022 0.72 +0.3 28,022 - pepQ SO0022 0.72 +0.8 28,022 - pepQ SO0022 0.72 +0.2 28,022 - pepQ SO0022 0.72 +0.0 28,071 - pepQ SO0022 0.76 -0.4 28,074 + pepQ SO0022 0.76 +0.4 28,111 + pepQ SO0022 0.79 +0.5 28,137 - pepQ SO0022 0.81 -0.9 28,141 + pepQ SO0022 0.81 +0.2 28,212 + pepQ SO0022 0.87 -0.2 28,293 - -0.1 28,303 - +0.0 28,354 - -0.4 28,388 + +0.0 28,414 - +0.1 28,414 - +0.9 28,417 + -0.0 28,458 + +0.9 28,463 - -0.2 28,469 + SO0023 0.11 -0.8 28,498 + SO0023 0.15 +1.8 28,538 + SO0023 0.22 -0.1 28,617 - SO0023 0.35 -0.0 28,647 + SO0023 0.40 -0.0 28,688 + SO0023 0.46 -0.7 28,698 + SO0023 0.48 -0.3 28,720 + SO0023 0.51 +0.2 28,728 - SO0023 0.53 -0.2 28,740 + SO0023 0.55 +0.4 28,759 + SO0023 0.58 +0.7 28,759 + SO0023 0.58 +0.0 28,759 + SO0023 0.58 -0.2 28,764 + SO0023 0.59 -0.1 28,778 - SO0023 0.61 +0.5 28,814 - SO0023 0.67 +0.4 28,962 + +1.1 28,965 + +0.1 28,977 + +0.4 28,977 + -0.1 28,977 + -0.1 28,977 + +0.0 28,983 + +0.4 28,985 - -0.4 28,986 - +0.6 28,991 - -0.2 29,005 + +0.2 29,005 + +0.7 29,096 + +0.1 29,096 + +0.2 29,143 + -0.3 29,251 + trkH-1 SO0024 0.11 -0.6 29,320 + trkH-1 SO0024 0.15 +1.3 29,320 + trkH-1 SO0024 0.15 -0.0 29,320 + trkH-1 SO0024 0.15 -0.2 29,320 + trkH-1 SO0024 0.15 +0.4 29,320 + trkH-1 SO0024 0.15 -2.1 29,320 + trkH-1 SO0024 0.15 -0.0 29,328 - trkH-1 SO0024 0.16 -0.3 29,328 - trkH-1 SO0024 0.16 -0.2 29,328 - trkH-1 SO0024 0.16 +1.4 29,328 - trkH-1 SO0024 0.16 +1.1 29,328 - trkH-1 SO0024 0.16 -0.2 29,328 - trkH-1 SO0024 0.16 -0.9 29,330 + trkH-1 SO0024 0.16 -0.5 29,330 + trkH-1 SO0024 0.16 -0.5 29,330 + trkH-1 SO0024 0.16 -1.3 29,338 - trkH-1 SO0024 0.17 -0.2 29,338 - trkH-1 SO0024 0.17 +0.7 29,338 - trkH-1 SO0024 0.17 -0.2 29,378 + trkH-1 SO0024 0.19 +0.2
Or see this region's nucleotide sequence