Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03700

Experiment: L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03680 and PGA1_c03690 are separated by 35 nucleotidesPGA1_c03690 and PGA1_c03700 are separated by 6 nucleotidesPGA1_c03700 and PGA1_c03710 overlap by 1 nucleotides PGA1_c03680: PGA1_c03680 - (3S)-malyl-CoA thioesterase [EC:3.1.2.30] (from data), at 355,129 to 355,983 _c03680 PGA1_c03690: PGA1_c03690 - putative NnrU protein, at 356,019 to 356,567 _c03690 PGA1_c03700: PGA1_c03700 - Uncharacterized conserved small protein, at 356,574 to 356,777 _c03700 PGA1_c03710: PGA1_c03710 - Acyl dehydratase, at 356,777 to 357,808 _c03710 Position (kb) 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 355.610 kb on + strand, within PGA1_c03680at 355.641 kb on - strand, within PGA1_c03680at 355.684 kb on - strand, within PGA1_c03680at 355.693 kb on + strand, within PGA1_c03680at 355.694 kb on - strand, within PGA1_c03680at 355.705 kb on + strand, within PGA1_c03680at 355.712 kb on + strand, within PGA1_c03680at 355.721 kb on - strand, within PGA1_c03680at 355.721 kb on - strand, within PGA1_c03680at 355.748 kb on - strand, within PGA1_c03680at 355.777 kb on + strand, within PGA1_c03680at 355.785 kb on - strand, within PGA1_c03680at 355.870 kb on + strand, within PGA1_c03680at 355.877 kb on - strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.881 kb on + strand, within PGA1_c03680at 355.883 kb on + strand, within PGA1_c03680at 355.883 kb on - strand, within PGA1_c03680at 355.889 kb on - strand, within PGA1_c03680at 355.889 kb on - strand, within PGA1_c03680at 355.889 kb on - strand, within PGA1_c03680at 355.980 kb on - strandat 355.980 kb on - strandat 356.002 kb on + strandat 356.002 kb on - strandat 356.031 kb on + strandat 356.097 kb on + strand, within PGA1_c03690at 356.097 kb on + strand, within PGA1_c03690at 356.105 kb on - strand, within PGA1_c03690at 356.105 kb on - strand, within PGA1_c03690at 356.105 kb on - strand, within PGA1_c03690at 356.105 kb on - strand, within PGA1_c03690at 356.130 kb on + strand, within PGA1_c03690at 356.159 kb on - strand, within PGA1_c03690at 356.159 kb on - strand, within PGA1_c03690at 356.175 kb on + strand, within PGA1_c03690at 356.185 kb on + strand, within PGA1_c03690at 356.186 kb on - strand, within PGA1_c03690at 356.186 kb on - strand, within PGA1_c03690at 356.233 kb on + strand, within PGA1_c03690at 356.263 kb on + strand, within PGA1_c03690at 356.263 kb on + strand, within PGA1_c03690at 356.268 kb on + strand, within PGA1_c03690at 356.271 kb on - strand, within PGA1_c03690at 356.271 kb on - strand, within PGA1_c03690at 356.271 kb on - strand, within PGA1_c03690at 356.276 kb on - strand, within PGA1_c03690at 356.276 kb on - strand, within PGA1_c03690at 356.379 kb on - strand, within PGA1_c03690at 356.389 kb on - strand, within PGA1_c03690at 356.436 kb on - strand, within PGA1_c03690at 356.441 kb on + strand, within PGA1_c03690at 356.444 kb on - strand, within PGA1_c03690at 356.449 kb on - strand, within PGA1_c03690at 356.519 kb on + strandat 356.538 kb on - strandat 356.620 kb on + strand, within PGA1_c03700at 356.628 kb on - strand, within PGA1_c03700at 356.628 kb on - strand, within PGA1_c03700at 356.642 kb on + strand, within PGA1_c03700at 356.642 kb on + strand, within PGA1_c03700at 356.650 kb on - strand, within PGA1_c03700at 356.658 kb on + strand, within PGA1_c03700at 356.736 kb on + strand, within PGA1_c03700at 356.751 kb on + strand, within PGA1_c03700at 356.759 kb on - strandat 356.780 kb on + strandat 356.780 kb on + strandat 356.787 kb on - strandat 356.788 kb on - strandat 356.789 kb on + strandat 356.792 kb on - strandat 356.797 kb on - strandat 356.797 kb on - strandat 356.869 kb on - strandat 356.937 kb on + strand, within PGA1_c03710at 356.937 kb on + strand, within PGA1_c03710at 356.945 kb on - strand, within PGA1_c03710at 357.002 kb on + strand, within PGA1_c03710at 357.072 kb on + strand, within PGA1_c03710at 357.077 kb on + strand, within PGA1_c03710at 357.078 kb on + strand, within PGA1_c03710at 357.078 kb on + strand, within PGA1_c03710at 357.078 kb on + strand, within PGA1_c03710at 357.086 kb on - strand, within PGA1_c03710at 357.086 kb on - strand, within PGA1_c03710at 357.086 kb on - strand, within PGA1_c03710at 357.086 kb on - strand, within PGA1_c03710at 357.086 kb on - strand, within PGA1_c03710at 357.146 kb on + strand, within PGA1_c03710at 357.165 kb on + strand, within PGA1_c03710at 357.167 kb on - strand, within PGA1_c03710at 357.167 kb on - strand, within PGA1_c03710at 357.167 kb on - strand, within PGA1_c03710at 357.172 kb on - strand, within PGA1_c03710at 357.172 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.173 kb on - strand, within PGA1_c03710at 357.188 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.207 kb on + strand, within PGA1_c03710at 357.215 kb on - strand, within PGA1_c03710at 357.215 kb on - strand, within PGA1_c03710at 357.215 kb on - strand, within PGA1_c03710at 357.268 kb on + strand, within PGA1_c03710at 357.268 kb on + strand, within PGA1_c03710at 357.275 kb on - strand, within PGA1_c03710at 357.281 kb on - strand, within PGA1_c03710at 357.308 kb on + strand, within PGA1_c03710at 357.348 kb on - strand, within PGA1_c03710at 357.374 kb on - strand, within PGA1_c03710at 357.394 kb on + strand, within PGA1_c03710at 357.402 kb on - strand, within PGA1_c03710at 357.408 kb on + strand, within PGA1_c03710at 357.412 kb on + strand, within PGA1_c03710at 357.435 kb on + strand, within PGA1_c03710at 357.443 kb on - strand, within PGA1_c03710at 357.495 kb on - strand, within PGA1_c03710at 357.500 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.505 kb on + strand, within PGA1_c03710at 357.513 kb on - strand, within PGA1_c03710at 357.513 kb on - strand, within PGA1_c03710at 357.521 kb on - strand, within PGA1_c03710at 357.533 kb on - strand, within PGA1_c03710at 357.589 kb on - strand, within PGA1_c03710at 357.600 kb on + strand, within PGA1_c03710at 357.607 kb on + strand, within PGA1_c03710at 357.615 kb on - strand, within PGA1_c03710at 357.620 kb on + strand, within PGA1_c03710at 357.647 kb on + strand, within PGA1_c03710at 357.647 kb on - strand, within PGA1_c03710at 357.652 kb on + strand, within PGA1_c03710at 357.655 kb on - strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.659 kb on + strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.667 kb on - strand, within PGA1_c03710at 357.722 kb on - strandat 357.722 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
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355,610 + PGA1_c03680 0.56 -1.8
355,641 - PGA1_c03680 0.60 -1.5
355,684 - PGA1_c03680 0.65 -1.0
355,693 + PGA1_c03680 0.66 +0.8
355,694 - PGA1_c03680 0.66 -1.1
355,705 + PGA1_c03680 0.67 -0.1
355,712 + PGA1_c03680 0.68 -1.9
355,721 - PGA1_c03680 0.69 +0.0
355,721 - PGA1_c03680 0.69 -0.1
355,748 - PGA1_c03680 0.72 -0.3
355,777 + PGA1_c03680 0.76 +1.1
355,785 - PGA1_c03680 0.77 -0.4
355,870 + PGA1_c03680 0.87 +0.7
355,877 - PGA1_c03680 0.87 -1.0
355,881 + PGA1_c03680 0.88 +0.0
355,881 + PGA1_c03680 0.88 -0.8
355,881 + PGA1_c03680 0.88 -0.3
355,881 + PGA1_c03680 0.88 +0.4
355,881 + PGA1_c03680 0.88 -2.9
355,881 + PGA1_c03680 0.88 -0.5
355,881 + PGA1_c03680 0.88 -0.4
355,883 + PGA1_c03680 0.88 -0.8
355,883 - PGA1_c03680 0.88 -1.8
355,889 - PGA1_c03680 0.89 -0.8
355,889 - PGA1_c03680 0.89 -0.9
355,889 - PGA1_c03680 0.89 +1.3
355,980 - -1.9
355,980 - -0.6
356,002 + +1.3
356,002 - +0.8
356,031 + -0.1
356,097 + PGA1_c03690 0.14 +1.9
356,097 + PGA1_c03690 0.14 -0.3
356,105 - PGA1_c03690 0.16 +0.5
356,105 - PGA1_c03690 0.16 -1.2
356,105 - PGA1_c03690 0.16 -0.7
356,105 - PGA1_c03690 0.16 -1.4
356,130 + PGA1_c03690 0.20 -2.9
356,159 - PGA1_c03690 0.26 +0.5
356,159 - PGA1_c03690 0.26 -2.3
356,175 + PGA1_c03690 0.28 +0.7
356,185 + PGA1_c03690 0.30 -0.7
356,186 - PGA1_c03690 0.30 +1.4
356,186 - PGA1_c03690 0.30 -1.5
356,233 + PGA1_c03690 0.39 -0.5
356,263 + PGA1_c03690 0.44 -0.3
356,263 + PGA1_c03690 0.44 -2.2
356,268 + PGA1_c03690 0.45 +0.3
356,271 - PGA1_c03690 0.46 -2.1
356,271 - PGA1_c03690 0.46 +0.4
356,271 - PGA1_c03690 0.46 +0.1
356,276 - PGA1_c03690 0.47 +0.9
356,276 - PGA1_c03690 0.47 -0.5
356,379 - PGA1_c03690 0.66 -1.2
356,389 - PGA1_c03690 0.67 +1.2
356,436 - PGA1_c03690 0.76 -0.5
356,441 + PGA1_c03690 0.77 +0.5
356,444 - PGA1_c03690 0.77 +0.2
356,449 - PGA1_c03690 0.78 -1.6
356,519 + +1.8
356,538 - -1.3
356,620 + PGA1_c03700 0.23 +0.4
356,628 - PGA1_c03700 0.26 +0.7
356,628 - PGA1_c03700 0.26 -0.3
356,642 + PGA1_c03700 0.33 +2.1
356,642 + PGA1_c03700 0.33 +0.7
356,650 - PGA1_c03700 0.37 +1.1
356,658 + PGA1_c03700 0.41 +0.6
356,736 + PGA1_c03700 0.79 -0.9
356,751 + PGA1_c03700 0.87 +0.4
356,759 - -1.0
356,780 + -0.5
356,780 + -0.9
356,787 - -0.8
356,788 - +0.1
356,789 + -0.2
356,792 - +1.8
356,797 - -2.1
356,797 - -0.7
356,869 - -0.3
356,937 + PGA1_c03710 0.16 +3.3
356,937 + PGA1_c03710 0.16 -1.5
356,945 - PGA1_c03710 0.16 +1.3
357,002 + PGA1_c03710 0.22 +1.4
357,072 + PGA1_c03710 0.29 -1.6
357,077 + PGA1_c03710 0.29 +0.5
357,078 + PGA1_c03710 0.29 +0.2
357,078 + PGA1_c03710 0.29 +0.3
357,078 + PGA1_c03710 0.29 -0.8
357,086 - PGA1_c03710 0.30 -0.4
357,086 - PGA1_c03710 0.30 +1.3
357,086 - PGA1_c03710 0.30 -0.1
357,086 - PGA1_c03710 0.30 -1.1
357,086 - PGA1_c03710 0.30 -0.1
357,146 + PGA1_c03710 0.36 -0.0
357,165 + PGA1_c03710 0.38 -0.3
357,167 - PGA1_c03710 0.38 +0.3
357,167 - PGA1_c03710 0.38 -0.1
357,167 - PGA1_c03710 0.38 -1.0
357,172 - PGA1_c03710 0.38 -0.5
357,172 - PGA1_c03710 0.38 +0.7
357,173 - PGA1_c03710 0.38 +1.1
357,173 - PGA1_c03710 0.38 +0.4
357,173 - PGA1_c03710 0.38 -1.3
357,173 - PGA1_c03710 0.38 -0.1
357,173 - PGA1_c03710 0.38 -1.3
357,173 - PGA1_c03710 0.38 -0.9
357,173 - PGA1_c03710 0.38 +0.5
357,173 - PGA1_c03710 0.38 -2.6
357,173 - PGA1_c03710 0.38 +0.5
357,173 - PGA1_c03710 0.38 +3.1
357,188 + PGA1_c03710 0.40 -0.1
357,207 + PGA1_c03710 0.42 -0.9
357,207 + PGA1_c03710 0.42 -0.3
357,207 + PGA1_c03710 0.42 +1.9
357,207 + PGA1_c03710 0.42 -1.5
357,207 + PGA1_c03710 0.42 +0.1
357,207 + PGA1_c03710 0.42 +0.1
357,207 + PGA1_c03710 0.42 -0.6
357,215 - PGA1_c03710 0.42 +1.3
357,215 - PGA1_c03710 0.42 +1.1
357,215 - PGA1_c03710 0.42 -0.3
357,268 + PGA1_c03710 0.48 +0.7
357,268 + PGA1_c03710 0.48 +0.7
357,275 - PGA1_c03710 0.48 -2.0
357,281 - PGA1_c03710 0.49 -0.1
357,308 + PGA1_c03710 0.51 +0.2
357,348 - PGA1_c03710 0.55 +0.0
357,374 - PGA1_c03710 0.58 +1.3
357,394 + PGA1_c03710 0.60 +0.0
357,402 - PGA1_c03710 0.61 -0.7
357,408 + PGA1_c03710 0.61 +0.4
357,412 + PGA1_c03710 0.62 +0.5
357,435 + PGA1_c03710 0.64 +0.4
357,443 - PGA1_c03710 0.65 -0.6
357,495 - PGA1_c03710 0.70 +0.6
357,500 + PGA1_c03710 0.70 +1.2
357,505 + PGA1_c03710 0.71 -0.1
357,505 + PGA1_c03710 0.71 -0.2
357,505 + PGA1_c03710 0.71 +1.6
357,505 + PGA1_c03710 0.71 -0.3
357,505 + PGA1_c03710 0.71 -0.1
357,505 + PGA1_c03710 0.71 +1.2
357,505 + PGA1_c03710 0.71 +0.5
357,505 + PGA1_c03710 0.71 -0.6
357,513 - PGA1_c03710 0.71 -1.9
357,513 - PGA1_c03710 0.71 -0.3
357,521 - PGA1_c03710 0.72 -0.3
357,533 - PGA1_c03710 0.73 -0.8
357,589 - PGA1_c03710 0.79 +1.1
357,600 + PGA1_c03710 0.80 -0.0
357,607 + PGA1_c03710 0.80 +0.3
357,615 - PGA1_c03710 0.81 +1.4
357,620 + PGA1_c03710 0.82 -0.8
357,647 + PGA1_c03710 0.84 +0.7
357,647 - PGA1_c03710 0.84 +0.7
357,652 + PGA1_c03710 0.85 -1.3
357,655 - PGA1_c03710 0.85 +0.1
357,659 + PGA1_c03710 0.85 +1.2
357,659 + PGA1_c03710 0.85 +1.6
357,659 + PGA1_c03710 0.85 +0.5
357,667 - PGA1_c03710 0.86 +0.7
357,667 - PGA1_c03710 0.86 +0.4
357,667 - PGA1_c03710 0.86 +0.4
357,722 - -0.6
357,722 - +1.5

Or see this region's nucleotide sequence