Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3535 and Dsui_3536 are separated by 101 nucleotides Dsui_3536 and Dsui_3537 are separated by 15 nucleotides Dsui_3537 and Dsui_3538 are separated by 8 nucleotides
Dsui_3535: Dsui_3535 - putative permease, at 3,800,343 to 3,801,428
_3535
Dsui_3536: Dsui_3536 - leucyl aminopeptidase, at 3,801,530 to 3,803,026
_3536
Dsui_3537: Dsui_3537 - DNA polymerase III, chi subunit, at 3,803,042 to 3,803,473
_3537
Dsui_3538: Dsui_3538 - hypothetical protein, at 3,803,482 to 3,803,961
_3538
Position (kb)
3801
3802
3803
3804 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3801.437 kb on - strand at 3801.613 kb on + strand at 3801.629 kb on + strand at 3801.682 kb on + strand, within Dsui_3536 at 3801.709 kb on + strand, within Dsui_3536 at 3801.751 kb on + strand, within Dsui_3536 at 3801.817 kb on + strand, within Dsui_3536 at 3801.837 kb on - strand, within Dsui_3536 at 3802.330 kb on + strand, within Dsui_3536 at 3802.429 kb on + strand, within Dsui_3536 at 3802.783 kb on + strand, within Dsui_3536 at 3802.807 kb on + strand, within Dsui_3536 at 3802.924 kb on + strand at 3803.020 kb on + strand at 3803.029 kb on - strand at 3803.458 kb on + strand at 3803.685 kb on - strand at 3803.805 kb on - strand at 3803.805 kb on - strand, within Dsui_3538 at 3803.822 kb on - strand, within Dsui_3538 at 3803.822 kb on - strand at 3803.950 kb on - strand at 3803.995 kb on + strand at 3804.024 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 3,801,437 - +0.0 3,801,613 + -0.9 3,801,629 + -0.9 3,801,682 + Dsui_3536 0.10 -2.1 3,801,709 + Dsui_3536 0.12 +0.6 3,801,751 + Dsui_3536 0.15 -1.2 3,801,817 + Dsui_3536 0.19 +1.0 3,801,837 - Dsui_3536 0.21 +0.3 3,802,330 + Dsui_3536 0.53 -0.5 3,802,429 + Dsui_3536 0.60 +1.2 3,802,783 + Dsui_3536 0.84 -2.8 3,802,807 + Dsui_3536 0.85 -1.4 3,802,924 + -0.3 3,803,020 + +0.7 3,803,029 - -0.7 3,803,458 + -0.0 3,803,685 - -0.3 3,803,805 - -0.7 3,803,805 - Dsui_3538 0.67 -0.6 3,803,822 - Dsui_3538 0.71 -1.2 3,803,822 - -1.2 3,803,950 - -1.1 3,803,995 + +0.4 3,804,024 + -0.4
Or see this region's nucleotide sequence