Strain Fitness in Dechlorosoma suillum PS around Dsui_2580

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2579 and Dsui_2580 are separated by 241 nucleotidesDsui_2580 and Dsui_2581 are separated by 574 nucleotides Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124 _2579 Dsui_2580: Dsui_2580 - hypothetical protein, at 2,731,366 to 2,731,740 _2580 Dsui_2581: Dsui_2581 - putative HD superfamily hydrolase, at 2,732,315 to 2,734,300 _2581 Position (kb) 2731 2732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2730.428 kb on + strand, within Dsui_2579at 2730.475 kb on + strand, within Dsui_2579at 2730.542 kb on + strand, within Dsui_2579at 2730.563 kb on + strand, within Dsui_2579at 2730.577 kb on - strand, within Dsui_2579at 2730.647 kb on + strand, within Dsui_2579at 2730.737 kb on + strand, within Dsui_2579at 2730.777 kb on + strand, within Dsui_2579at 2730.777 kb on + strand, within Dsui_2579at 2730.782 kb on + strand, within Dsui_2579at 2730.817 kb on + strand, within Dsui_2579at 2730.817 kb on + strand, within Dsui_2579at 2730.819 kb on + strand, within Dsui_2579at 2730.844 kb on + strand, within Dsui_2579at 2730.863 kb on + strand, within Dsui_2579at 2730.904 kb on + strand, within Dsui_2579at 2730.930 kb on + strand, within Dsui_2579at 2730.940 kb on + strand, within Dsui_2579at 2730.948 kb on - strand, within Dsui_2579at 2731.032 kb on + strandat 2731.032 kb on + strandat 2731.032 kb on + strandat 2731.040 kb on - strandat 2731.040 kb on - strandat 2731.065 kb on + strandat 2731.116 kb on - strandat 2731.119 kb on + strandat 2731.168 kb on + strandat 2731.185 kb on + strandat 2731.185 kb on + strandat 2731.192 kb on + strandat 2731.210 kb on + strandat 2731.229 kb on + strandat 2731.229 kb on + strandat 2731.229 kb on + strandat 2731.245 kb on - strandat 2731.247 kb on + strandat 2731.247 kb on + strandat 2731.247 kb on + strandat 2731.248 kb on + strandat 2731.266 kb on + strandat 2731.331 kb on + strandat 2731.349 kb on + strandat 2731.350 kb on + strandat 2731.360 kb on - strandat 2731.362 kb on + strandat 2731.388 kb on - strandat 2731.397 kb on + strandat 2731.397 kb on + strandat 2731.405 kb on + strand, within Dsui_2580at 2731.413 kb on - strand, within Dsui_2580at 2731.430 kb on + strand, within Dsui_2580at 2731.430 kb on + strand, within Dsui_2580at 2731.442 kb on + strand, within Dsui_2580at 2731.445 kb on - strand, within Dsui_2580at 2731.450 kb on - strandat 2731.450 kb on - strand, within Dsui_2580at 2731.450 kb on - strand, within Dsui_2580at 2731.474 kb on + strand, within Dsui_2580at 2731.549 kb on - strand, within Dsui_2580at 2731.554 kb on - strandat 2731.559 kb on + strand, within Dsui_2580at 2731.559 kb on + strand, within Dsui_2580at 2731.559 kb on + strand, within Dsui_2580at 2731.599 kb on + strand, within Dsui_2580at 2731.616 kb on + strand, within Dsui_2580at 2731.624 kb on - strand, within Dsui_2580at 2731.624 kb on - strand, within Dsui_2580at 2731.633 kb on + strand, within Dsui_2580at 2731.638 kb on + strand, within Dsui_2580at 2731.638 kb on + strand, within Dsui_2580at 2731.638 kb on + strand, within Dsui_2580at 2731.646 kb on - strand, within Dsui_2580at 2731.646 kb on - strand, within Dsui_2580at 2731.648 kb on + strand, within Dsui_2580at 2731.648 kb on + strand, within Dsui_2580at 2731.649 kb on - strand, within Dsui_2580at 2731.656 kb on - strand, within Dsui_2580at 2731.658 kb on + strand, within Dsui_2580at 2731.667 kb on - strandat 2731.713 kb on - strandat 2731.720 kb on + strandat 2731.727 kb on - strandat 2731.747 kb on + strandat 2731.804 kb on + strandat 2731.804 kb on + strandat 2731.804 kb on + strandat 2731.804 kb on + strandat 2731.804 kb on + strandat 2731.804 kb on + strandat 2731.807 kb on - strandat 2731.812 kb on - strandat 2731.812 kb on - strandat 2731.812 kb on - strandat 2731.845 kb on + strandat 2731.845 kb on - strandat 2731.846 kb on + strandat 2731.875 kb on + strandat 2731.875 kb on + strandat 2731.896 kb on + strandat 2731.896 kb on + strandat 2731.901 kb on + strandat 2731.901 kb on + strandat 2731.948 kb on + strandat 2731.962 kb on + strandat 2731.963 kb on + strandat 2731.970 kb on + strandat 2731.970 kb on - strandat 2731.979 kb on - strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.981 kb on + strandat 2731.984 kb on - strandat 2731.989 kb on - strandat 2731.989 kb on - strandat 2731.989 kb on - strandat 2731.991 kb on + strandat 2731.999 kb on - strandat 2732.044 kb on - strandat 2732.052 kb on - strandat 2732.054 kb on + strandat 2732.056 kb on + strandat 2732.056 kb on + strandat 2732.108 kb on + strandat 2732.110 kb on + strandat 2732.112 kb on - strandat 2732.117 kb on + strandat 2732.117 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.122 kb on + strandat 2732.130 kb on - strandat 2732.130 kb on - strandat 2732.130 kb on - strandat 2732.130 kb on - strandat 2732.130 kb on - strandat 2732.141 kb on + strandat 2732.184 kb on + strandat 2732.199 kb on + strandat 2732.208 kb on + strandat 2732.218 kb on + strandat 2732.261 kb on + strandat 2732.299 kb on + strandat 2732.304 kb on + strandat 2732.306 kb on + strandat 2732.312 kb on - strandat 2732.320 kb on - strandat 2732.320 kb on - strandat 2732.321 kb on - strandat 2732.339 kb on + strandat 2732.340 kb on - strandat 2732.352 kb on + strandat 2732.370 kb on + strandat 2732.378 kb on + strandat 2732.383 kb on + strandat 2732.391 kb on - strandat 2732.398 kb on + strandat 2732.398 kb on + strandat 2732.398 kb on + strandat 2732.406 kb on - strandat 2732.406 kb on - strandat 2732.421 kb on - strandat 2732.464 kb on - strandat 2732.518 kb on - strand, within Dsui_2581at 2732.520 kb on + strand, within Dsui_2581at 2732.520 kb on + strand, within Dsui_2581at 2732.530 kb on + strand, within Dsui_2581at 2732.530 kb on + strand, within Dsui_2581at 2732.558 kb on - strand, within Dsui_2581at 2732.578 kb on + strand, within Dsui_2581at 2732.578 kb on + strand, within Dsui_2581at 2732.586 kb on - strand, within Dsui_2581at 2732.596 kb on - strand, within Dsui_2581at 2732.668 kb on + strand, within Dsui_2581at 2732.694 kb on + strand, within Dsui_2581at 2732.722 kb on + strand, within Dsui_2581at 2732.727 kb on + strand, within Dsui_2581at 2732.740 kb on - strand, within Dsui_2581

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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2,730,428 + Dsui_2579 0.34 -0.1
2,730,475 + Dsui_2579 0.38 -0.6
2,730,542 + Dsui_2579 0.45 +0.2
2,730,563 + Dsui_2579 0.47 +0.4
2,730,577 - Dsui_2579 0.48 -0.9
2,730,647 + Dsui_2579 0.55 +0.1
2,730,737 + Dsui_2579 0.63 +0.1
2,730,777 + Dsui_2579 0.67 +0.1
2,730,777 + Dsui_2579 0.67 +0.3
2,730,782 + Dsui_2579 0.67 +1.0
2,730,817 + Dsui_2579 0.71 -0.1
2,730,817 + Dsui_2579 0.71 +0.9
2,730,819 + Dsui_2579 0.71 -0.5
2,730,844 + Dsui_2579 0.73 -0.1
2,730,863 + Dsui_2579 0.75 +0.3
2,730,904 + Dsui_2579 0.79 -1.1
2,730,930 + Dsui_2579 0.81 +1.1
2,730,940 + Dsui_2579 0.82 +0.8
2,730,948 - Dsui_2579 0.83 +2.9
2,731,032 + -0.0
2,731,032 + +0.2
2,731,032 + -0.3
2,731,040 - +1.5
2,731,040 - +0.0
2,731,065 + -0.2
2,731,116 - +0.3
2,731,119 + +0.7
2,731,168 + -0.8
2,731,185 + -0.4
2,731,185 + +0.1
2,731,192 + +1.9
2,731,210 + -3.1
2,731,229 + -0.2
2,731,229 + +0.9
2,731,229 + -0.8
2,731,245 - +1.9
2,731,247 + +0.0
2,731,247 + -0.5
2,731,247 + +1.2
2,731,248 + +0.8
2,731,266 + -0.6
2,731,331 + +0.2
2,731,349 + -0.1
2,731,350 + +0.3
2,731,360 - -1.0
2,731,362 + -0.7
2,731,388 - -0.9
2,731,397 + +0.1
2,731,397 + +0.1
2,731,405 + Dsui_2580 0.10 +0.6
2,731,413 - Dsui_2580 0.13 +1.9
2,731,430 + Dsui_2580 0.17 +0.1
2,731,430 + Dsui_2580 0.17 -0.3
2,731,442 + Dsui_2580 0.20 -0.3
2,731,445 - Dsui_2580 0.21 +0.9
2,731,450 - -0.7
2,731,450 - Dsui_2580 0.22 +0.4
2,731,450 - Dsui_2580 0.22 -0.9
2,731,474 + Dsui_2580 0.29 +0.1
2,731,549 - Dsui_2580 0.49 -0.5
2,731,554 - +0.9
2,731,559 + Dsui_2580 0.51 -0.5
2,731,559 + Dsui_2580 0.51 -0.0
2,731,559 + Dsui_2580 0.51 -0.1
2,731,599 + Dsui_2580 0.62 +0.7
2,731,616 + Dsui_2580 0.67 -0.1
2,731,624 - Dsui_2580 0.69 +0.9
2,731,624 - Dsui_2580 0.69 +0.1
2,731,633 + Dsui_2580 0.71 +1.5
2,731,638 + Dsui_2580 0.73 -2.1
2,731,638 + Dsui_2580 0.73 +0.2
2,731,638 + Dsui_2580 0.73 -0.5
2,731,646 - Dsui_2580 0.75 +1.7
2,731,646 - Dsui_2580 0.75 +1.7
2,731,648 + Dsui_2580 0.75 +0.5
2,731,648 + Dsui_2580 0.75 +0.2
2,731,649 - Dsui_2580 0.75 +1.0
2,731,656 - Dsui_2580 0.77 -1.7
2,731,658 + Dsui_2580 0.78 +0.0
2,731,667 - -0.7
2,731,713 - +1.5
2,731,720 + +0.0
2,731,727 - +0.9
2,731,747 + +0.3
2,731,804 + +0.9
2,731,804 + -0.4
2,731,804 + +0.1
2,731,804 + +0.2
2,731,804 + +0.2
2,731,804 + +0.1
2,731,807 - +0.2
2,731,812 - +1.5
2,731,812 - -0.1
2,731,812 - -1.0
2,731,845 + +0.5
2,731,845 - -1.7
2,731,846 + -0.2
2,731,875 + -0.1
2,731,875 + -0.9
2,731,896 + +0.1
2,731,896 + +0.1
2,731,901 + -0.4
2,731,901 + -0.2
2,731,948 + -0.2
2,731,962 + -0.2
2,731,963 + +0.1
2,731,970 + -0.9
2,731,970 - -0.5
2,731,979 - -0.2
2,731,981 + -0.1
2,731,981 + +1.6
2,731,981 + +0.6
2,731,981 + -0.9
2,731,981 + -0.6
2,731,981 + -0.1
2,731,981 + +0.1
2,731,981 + +0.5
2,731,984 - -1.2
2,731,989 - +0.4
2,731,989 - -0.5
2,731,989 - -0.1
2,731,991 + +0.3
2,731,999 - -2.5
2,732,044 - +0.0
2,732,052 - -0.5
2,732,054 + +0.1
2,732,056 + -0.3
2,732,056 + +0.9
2,732,108 + -0.2
2,732,110 + -0.6
2,732,112 - +3.9
2,732,117 + -0.5
2,732,117 + -2.1
2,732,122 + +0.5
2,732,122 + +0.3
2,732,122 + -0.1
2,732,122 + -0.3
2,732,122 + +0.1
2,732,122 + -0.3
2,732,122 + -0.0
2,732,130 - +1.9
2,732,130 - -0.9
2,732,130 - -1.4
2,732,130 - -0.2
2,732,130 - -0.6
2,732,141 + -0.6
2,732,184 + +1.0
2,732,199 + -0.1
2,732,208 + +1.0
2,732,218 + +0.8
2,732,261 + +0.1
2,732,299 + +1.5
2,732,304 + -0.1
2,732,306 + +0.8
2,732,312 - -1.0
2,732,320 - +0.7
2,732,320 - -1.0
2,732,321 - -0.3
2,732,339 + -0.6
2,732,340 - -0.1
2,732,352 + +0.1
2,732,370 + +0.6
2,732,378 + +0.0
2,732,383 + +0.3
2,732,391 - -0.0
2,732,398 + -0.1
2,732,398 + -0.3
2,732,398 + +0.0
2,732,406 - +0.5
2,732,406 - -0.4
2,732,421 - -0.3
2,732,464 - +1.2
2,732,518 - Dsui_2581 0.10 +1.6
2,732,520 + Dsui_2581 0.10 +0.4
2,732,520 + Dsui_2581 0.10 +0.2
2,732,530 + Dsui_2581 0.11 +0.3
2,732,530 + Dsui_2581 0.11 -2.3
2,732,558 - Dsui_2581 0.12 +0.5
2,732,578 + Dsui_2581 0.13 -0.3
2,732,578 + Dsui_2581 0.13 -0.8
2,732,586 - Dsui_2581 0.14 -0.4
2,732,596 - Dsui_2581 0.14 +0.4
2,732,668 + Dsui_2581 0.18 -0.2
2,732,694 + Dsui_2581 0.19 -0.0
2,732,722 + Dsui_2581 0.20 +0.1
2,732,727 + Dsui_2581 0.21 +0.2
2,732,740 - Dsui_2581 0.21 +0.1

Or see this region's nucleotide sequence