Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0321 and Dsui_0322 are separated by 63 nucleotides Dsui_0322 and Dsui_0323 overlap by 8 nucleotides Dsui_0323 and Dsui_0324 are separated by 9 nucleotides Dsui_0324 and Dsui_0325 are separated by 7 nucleotides
Dsui_0321: Dsui_0321 - long-chain fatty acid transport protein, at 325,119 to 326,417
_0321
Dsui_0322: Dsui_0322 - acyl-CoA hydrolase, at 326,481 to 326,879
_0322
Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809
_0323
Dsui_0324: Dsui_0324 - EDD domain protein, DegV family, at 328,819 to 329,763
_0324
Dsui_0325: Dsui_0325 - acetyl-CoA acetyltransferase, at 329,771 to 331,069
_0325
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 325.898 kb on - strand, within Dsui_0321 at 325.917 kb on - strand, within Dsui_0321 at 325.950 kb on - strand, within Dsui_0321 at 326.004 kb on + strand, within Dsui_0321 at 326.009 kb on + strand, within Dsui_0321 at 326.012 kb on - strand, within Dsui_0321 at 326.034 kb on + strand, within Dsui_0321 at 326.187 kb on - strand, within Dsui_0321 at 326.194 kb on + strand, within Dsui_0321 at 326.199 kb on + strand, within Dsui_0321 at 326.261 kb on + strand, within Dsui_0321 at 326.303 kb on - strand at 326.359 kb on + strand at 326.397 kb on + strand at 326.405 kb on - strand at 326.460 kb on - strand at 326.597 kb on + strand, within Dsui_0322 at 326.603 kb on - strand, within Dsui_0322 at 326.605 kb on - strand, within Dsui_0322 at 326.605 kb on - strand, within Dsui_0322 at 326.611 kb on - strand, within Dsui_0322 at 326.769 kb on + strand, within Dsui_0322 at 326.839 kb on - strand, within Dsui_0322 at 327.040 kb on + strand at 327.064 kb on + strand at 327.167 kb on - strand, within Dsui_0323 at 327.228 kb on + strand, within Dsui_0323 at 327.256 kb on + strand, within Dsui_0323 at 327.292 kb on + strand, within Dsui_0323 at 327.341 kb on + strand, within Dsui_0323 at 327.412 kb on + strand at 327.414 kb on - strand, within Dsui_0323 at 327.420 kb on - strand, within Dsui_0323 at 327.449 kb on + strand, within Dsui_0323 at 327.528 kb on + strand, within Dsui_0323 at 327.552 kb on + strand, within Dsui_0323 at 327.758 kb on + strand, within Dsui_0323 at 327.777 kb on - strand, within Dsui_0323 at 327.987 kb on - strand, within Dsui_0323 at 328.171 kb on - strand, within Dsui_0323 at 328.370 kb on + strand, within Dsui_0323 at 328.388 kb on - strand, within Dsui_0323 at 328.719 kb on - strand at 329.020 kb on - strand, within Dsui_0324 at 329.024 kb on - strand, within Dsui_0324 at 329.070 kb on - strand, within Dsui_0324 at 329.081 kb on - strand, within Dsui_0324 at 329.157 kb on + strand, within Dsui_0324 at 329.157 kb on + strand, within Dsui_0324 at 329.165 kb on - strand, within Dsui_0324 at 329.213 kb on + strand, within Dsui_0324 at 329.279 kb on - strand, within Dsui_0324 at 329.346 kb on - strand, within Dsui_0324 at 329.348 kb on + strand, within Dsui_0324 at 329.387 kb on - strand, within Dsui_0324 at 329.553 kb on + strand at 329.553 kb on + strand, within Dsui_0324 at 329.598 kb on + strand, within Dsui_0324 at 329.607 kb on - strand, within Dsui_0324
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 325,898 - Dsui_0321 0.60 +0.4 325,917 - Dsui_0321 0.61 +0.1 325,950 - Dsui_0321 0.64 -0.4 326,004 + Dsui_0321 0.68 -0.1 326,009 + Dsui_0321 0.69 -0.6 326,012 - Dsui_0321 0.69 -1.7 326,034 + Dsui_0321 0.70 -0.7 326,187 - Dsui_0321 0.82 -0.2 326,194 + Dsui_0321 0.83 -0.2 326,199 + Dsui_0321 0.83 +0.6 326,261 + Dsui_0321 0.88 -0.6 326,303 - +0.1 326,359 + +0.6 326,397 + +1.0 326,405 - +1.3 326,460 - -0.7 326,597 + Dsui_0322 0.29 -0.3 326,603 - Dsui_0322 0.31 -0.3 326,605 - Dsui_0322 0.31 -0.3 326,605 - Dsui_0322 0.31 -1.3 326,611 - Dsui_0322 0.33 -0.3 326,769 + Dsui_0322 0.72 -0.3 326,839 - Dsui_0322 0.90 +0.5 327,040 + -0.3 327,064 + -0.4 327,167 - Dsui_0323 0.15 -0.1 327,228 + Dsui_0323 0.18 +0.4 327,256 + Dsui_0323 0.20 +0.3 327,292 + Dsui_0323 0.22 +0.4 327,341 + Dsui_0323 0.24 -0.6 327,412 + -2.9 327,414 - Dsui_0323 0.28 -1.1 327,420 - Dsui_0323 0.28 -0.3 327,449 + Dsui_0323 0.30 +1.3 327,528 + Dsui_0323 0.34 +0.1 327,552 + Dsui_0323 0.35 -0.0 327,758 + Dsui_0323 0.46 -0.1 327,777 - Dsui_0323 0.47 +0.1 327,987 - Dsui_0323 0.58 +0.1 328,171 - Dsui_0323 0.67 +0.5 328,370 + Dsui_0323 0.77 -0.1 328,388 - Dsui_0323 0.78 +0.2 328,719 - +0.8 329,020 - Dsui_0324 0.21 +0.5 329,024 - Dsui_0324 0.22 -1.0 329,070 - Dsui_0324 0.27 +1.0 329,081 - Dsui_0324 0.28 -0.6 329,157 + Dsui_0324 0.36 -0.5 329,157 + Dsui_0324 0.36 +0.1 329,165 - Dsui_0324 0.37 -0.0 329,213 + Dsui_0324 0.42 -1.8 329,279 - Dsui_0324 0.49 +0.2 329,346 - Dsui_0324 0.56 +0.3 329,348 + Dsui_0324 0.56 -0.3 329,387 - Dsui_0324 0.60 -0.0 329,553 + -1.0 329,553 + Dsui_0324 0.78 +0.2 329,598 + Dsui_0324 0.82 +0.6 329,607 - Dsui_0324 0.83 +1.0
Or see this region's nucleotide sequence