Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0267 and Dsui_0268 are separated by 48 nucleotides Dsui_0268 and Dsui_0269 are separated by 9 nucleotides
Dsui_0267: Dsui_0267 - multidrug resistance efflux pump, at 266,722 to 267,708
_0267
Dsui_0268: Dsui_0268 - ABC-type multidrug transport system, ATPase component, at 267,757 to 270,513
_0268
Dsui_0269: Dsui_0269 - ABC-type multidrug transport system, permease component, at 270,523 to 271,659
_0269
Position (kb) 267
268
269
270
271 Strain fitness (log2 ratio) -1
0
1
2
3 at 266.951 kb on + strand, within Dsui_0267 at 267.149 kb on + strand, within Dsui_0267 at 267.202 kb on + strand, within Dsui_0267 at 267.210 kb on - strand at 267.249 kb on + strand, within Dsui_0267 at 267.249 kb on + strand, within Dsui_0267 at 267.257 kb on - strand, within Dsui_0267 at 267.264 kb on - strand, within Dsui_0267 at 267.367 kb on + strand, within Dsui_0267 at 267.434 kb on + strand, within Dsui_0267 at 267.707 kb on + strand at 267.823 kb on - strand at 267.918 kb on - strand at 267.947 kb on - strand at 267.973 kb on + strand at 268.035 kb on - strand, within Dsui_0268 at 268.047 kb on + strand, within Dsui_0268 at 268.055 kb on - strand at 268.115 kb on - strand at 268.231 kb on + strand, within Dsui_0268 at 268.353 kb on - strand at 268.478 kb on + strand, within Dsui_0268 at 268.599 kb on - strand, within Dsui_0268 at 268.740 kb on + strand, within Dsui_0268 at 268.740 kb on + strand, within Dsui_0268 at 268.743 kb on - strand, within Dsui_0268 at 268.748 kb on - strand, within Dsui_0268 at 268.840 kb on - strand, within Dsui_0268 at 268.847 kb on - strand, within Dsui_0268 at 269.017 kb on + strand, within Dsui_0268 at 269.085 kb on + strand, within Dsui_0268 at 269.085 kb on + strand, within Dsui_0268 at 269.093 kb on - strand, within Dsui_0268 at 269.093 kb on - strand, within Dsui_0268 at 269.093 kb on - strand, within Dsui_0268 at 269.111 kb on + strand, within Dsui_0268 at 269.190 kb on - strand, within Dsui_0268 at 269.462 kb on + strand, within Dsui_0268 at 269.533 kb on - strand, within Dsui_0268 at 269.617 kb on - strand, within Dsui_0268 at 269.797 kb on + strand, within Dsui_0268 at 269.860 kb on + strand, within Dsui_0268 at 269.863 kb on - strand at 269.865 kb on + strand, within Dsui_0268 at 269.873 kb on - strand at 269.874 kb on - strand, within Dsui_0268 at 270.014 kb on + strand, within Dsui_0268 at 270.032 kb on - strand, within Dsui_0268 at 270.042 kb on - strand at 270.088 kb on - strand, within Dsui_0268 at 270.135 kb on - strand, within Dsui_0268 at 270.186 kb on + strand, within Dsui_0268 at 270.194 kb on - strand at 270.209 kb on + strand, within Dsui_0268 at 270.209 kb on + strand, within Dsui_0268 at 270.217 kb on - strand, within Dsui_0268 at 270.217 kb on - strand, within Dsui_0268 at 270.240 kb on + strand at 270.360 kb on - strand at 270.360 kb on - strand at 270.409 kb on + strand at 270.414 kb on + strand at 270.455 kb on + strand at 270.463 kb on - strand at 270.705 kb on + strand, within Dsui_0269 at 270.705 kb on - strand, within Dsui_0269 at 270.750 kb on + strand, within Dsui_0269 at 270.818 kb on + strand, within Dsui_0269 at 270.918 kb on - strand, within Dsui_0269 at 270.918 kb on - strand, within Dsui_0269 at 271.029 kb on + strand, within Dsui_0269 at 271.067 kb on + strand, within Dsui_0269 at 271.171 kb on + strand, within Dsui_0269 at 271.179 kb on - strand, within Dsui_0269 at 271.189 kb on - strand, within Dsui_0269 at 271.203 kb on + strand, within Dsui_0269 at 271.211 kb on - strand, within Dsui_0269 at 271.329 kb on - strand, within Dsui_0269 at 271.340 kb on - strand, within Dsui_0269 at 271.383 kb on + strand, within Dsui_0269 at 271.412 kb on + strand, within Dsui_0269
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 266,951 + Dsui_0267 0.23 +1.9 267,149 + Dsui_0267 0.43 -1.6 267,202 + Dsui_0267 0.49 -0.7 267,210 - +1.9 267,249 + Dsui_0267 0.53 +1.9 267,249 + Dsui_0267 0.53 -0.9 267,257 - Dsui_0267 0.54 +0.3 267,264 - Dsui_0267 0.55 -0.1 267,367 + Dsui_0267 0.65 +0.9 267,434 + Dsui_0267 0.72 -0.4 267,707 + -0.1 267,823 - +1.9 267,918 - +1.9 267,947 - -0.7 267,973 + +0.3 268,035 - Dsui_0268 0.10 +0.9 268,047 + Dsui_0268 0.11 -0.1 268,055 - +1.9 268,115 - +1.9 268,231 + Dsui_0268 0.17 +1.9 268,353 - +3.5 268,478 + Dsui_0268 0.26 +0.3 268,599 - Dsui_0268 0.31 +1.9 268,740 + Dsui_0268 0.36 +1.9 268,740 + Dsui_0268 0.36 -0.1 268,743 - Dsui_0268 0.36 -0.9 268,748 - Dsui_0268 0.36 +3.5 268,840 - Dsui_0268 0.39 +2.9 268,847 - Dsui_0268 0.40 -0.1 269,017 + Dsui_0268 0.46 +0.9 269,085 + Dsui_0268 0.48 +2.9 269,085 + Dsui_0268 0.48 +0.9 269,093 - Dsui_0268 0.48 +1.9 269,093 - Dsui_0268 0.48 +1.9 269,093 - Dsui_0268 0.48 +1.9 269,111 + Dsui_0268 0.49 -1.6 269,190 - Dsui_0268 0.52 +1.9 269,462 + Dsui_0268 0.62 +3.2 269,533 - Dsui_0268 0.64 +1.9 269,617 - Dsui_0268 0.67 +0.9 269,797 + Dsui_0268 0.74 +0.3 269,860 + Dsui_0268 0.76 +0.3 269,863 - +1.9 269,865 + Dsui_0268 0.76 +1.9 269,873 - +1.9 269,874 - Dsui_0268 0.77 +1.9 270,014 + Dsui_0268 0.82 +1.9 270,032 - Dsui_0268 0.83 -0.1 270,042 - +1.9 270,088 - Dsui_0268 0.85 +0.3 270,135 - Dsui_0268 0.86 +0.3 270,186 + Dsui_0268 0.88 +1.9 270,194 - +1.9 270,209 + Dsui_0268 0.89 +0.3 270,209 + Dsui_0268 0.89 +0.3 270,217 - Dsui_0268 0.89 -0.3 270,217 - Dsui_0268 0.89 +0.9 270,240 + -0.7 270,360 - +1.9 270,360 - +3.5 270,409 + +1.9 270,414 + +1.9 270,455 + +0.9 270,463 - +1.9 270,705 + Dsui_0269 0.16 +1.9 270,705 - Dsui_0269 0.16 +0.3 270,750 + Dsui_0269 0.20 +1.9 270,818 + Dsui_0269 0.26 +0.9 270,918 - Dsui_0269 0.35 +0.9 270,918 - Dsui_0269 0.35 +0.3 271,029 + Dsui_0269 0.45 +2.9 271,067 + Dsui_0269 0.48 +1.9 271,171 + Dsui_0269 0.57 +0.3 271,179 - Dsui_0269 0.58 +0.9 271,189 - Dsui_0269 0.59 -1.3 271,203 + Dsui_0269 0.60 +0.9 271,211 - Dsui_0269 0.61 +1.9 271,329 - Dsui_0269 0.71 +1.9 271,340 - Dsui_0269 0.72 +0.9 271,383 + Dsui_0269 0.76 +0.9 271,412 + Dsui_0269 0.78 +1.9
Or see this region's nucleotide sequence