Strain Fitness in Dechlorosoma suillum PS around Dsui_0182

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0180 and Dsui_0181 are separated by 180 nucleotidesDsui_0181 and Dsui_0182 are separated by 393 nucleotidesDsui_0182 and Dsui_0183 are separated by 2 nucleotidesDsui_0183 and Dsui_0184 are separated by 187 nucleotides Dsui_0180: Dsui_0180 - hypothetical protein, at 182,616 to 182,885 _0180 Dsui_0181: Dsui_0181 - hypothetical protein, at 183,066 to 183,296 _0181 Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331 _0182 Dsui_0183: Dsui_0183 - SOS response transcriptional repressor, RecA-mediated autopeptidase, at 184,334 to 184,930 _0183 Dsui_0184: Dsui_0184 - putative transcriptional regulator, at 185,118 to 185,351 _0184 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 182.708 kb on - strand, within Dsui_0180at 182.756 kb on - strand, within Dsui_0180at 182.764 kb on - strand, within Dsui_0180at 183.045 kb on + strandat 183.089 kb on - strand, within Dsui_0181at 183.210 kb on + strand, within Dsui_0181at 183.315 kb on + strandat 183.336 kb on + strandat 183.344 kb on - strandat 183.428 kb on - strandat 183.501 kb on + strandat 183.540 kb on + strandat 183.545 kb on + strandat 183.590 kb on - strandat 183.619 kb on - strandat 183.622 kb on + strandat 183.634 kb on + strandat 183.743 kb on - strandat 183.743 kb on - strandat 183.762 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.768 kb on - strand, within Dsui_0182at 183.773 kb on - strand, within Dsui_0182at 183.786 kb on + strand, within Dsui_0182at 183.848 kb on - strand, within Dsui_0182at 183.861 kb on + strand, within Dsui_0182at 183.863 kb on + strand, within Dsui_0182at 183.936 kb on + strand, within Dsui_0182at 183.947 kb on - strand, within Dsui_0182at 183.994 kb on + strand, within Dsui_0182at 183.997 kb on - strand, within Dsui_0182at 184.014 kb on + strand, within Dsui_0182at 184.022 kb on - strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.066 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.067 kb on + strand, within Dsui_0182at 184.075 kb on - strand, within Dsui_0182at 184.108 kb on - strand, within Dsui_0182at 184.145 kb on + strand, within Dsui_0182at 184.179 kb on - strand, within Dsui_0182at 184.341 kb on - strandat 185.099 kb on - strandat 185.108 kb on - strandat 185.161 kb on - strand, within Dsui_0184at 185.270 kb on - strand, within Dsui_0184

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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182,708 - Dsui_0180 0.34 +1.2
182,756 - Dsui_0180 0.52 -0.0
182,764 - Dsui_0180 0.55 -2.2
183,045 + -0.6
183,089 - Dsui_0181 0.10 -0.5
183,210 + Dsui_0181 0.62 +1.4
183,315 + -1.3
183,336 + +0.3
183,344 - +0.0
183,428 - +0.4
183,501 + -0.1
183,540 + +0.1
183,545 + +1.0
183,590 - -0.6
183,619 - -0.1
183,622 + +1.9
183,634 + -0.3
183,743 - -0.2
183,743 - -0.8
183,762 - Dsui_0182 0.11 +0.4
183,768 - Dsui_0182 0.12 +1.1
183,768 - Dsui_0182 0.12 -0.4
183,773 - Dsui_0182 0.13 -0.1
183,786 + Dsui_0182 0.15 +1.0
183,848 - Dsui_0182 0.25 +0.2
183,861 + Dsui_0182 0.27 +0.6
183,863 + Dsui_0182 0.27 -0.1
183,936 + Dsui_0182 0.38 +0.0
183,947 - Dsui_0182 0.40 +0.1
183,994 + Dsui_0182 0.47 -0.9
183,997 - Dsui_0182 0.48 -0.4
184,014 + Dsui_0182 0.50 -0.7
184,022 - Dsui_0182 0.52 -0.2
184,066 + Dsui_0182 0.59 +0.9
184,066 + Dsui_0182 0.59 -0.0
184,067 + Dsui_0182 0.59 -0.4
184,067 + Dsui_0182 0.59 -0.3
184,075 - Dsui_0182 0.60 -0.2
184,108 - Dsui_0182 0.65 +0.6
184,145 + Dsui_0182 0.71 +1.0
184,179 - Dsui_0182 0.76 +0.2
184,341 - -0.3
185,099 - -0.8
185,108 - -1.5
185,161 - Dsui_0184 0.18 +1.3
185,270 - Dsui_0184 0.65 -0.5

Or see this region's nucleotide sequence