Strain Fitness in Shewanella amazonensis SB2B around Sama_2901

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,448,565	+		Sama_2900	0.39	-0.4
3,448,588	+		Sama_2900	0.41	+0.7
3,448,588	+		Sama_2900	0.41	-1.7
3,448,588	+		Sama_2900	0.41	+2.5
3,448,588	+		Sama_2900	0.41	-0.3
3,448,588	+		Sama_2900	0.41	-0.6
3,448,589	-		Sama_2900	0.41	-1.8
3,448,631	+		Sama_2900	0.45	-1.2
3,448,631	+		Sama_2900	0.45	+2.0
3,448,631	+		Sama_2900	0.45	-1.5
3,448,632	-		Sama_2900	0.45	+0.0
3,448,642	+		Sama_2900	0.46	-0.2
3,448,642	+		Sama_2900	0.46	-1.7
3,448,642	+		Sama_2900	0.46	+1.2
3,448,775	+		Sama_2900	0.60	+0.7
3,448,775	+		Sama_2900	0.60	+2.0
3,448,776	-		Sama_2900	0.60	-2.3
3,448,776	-		Sama_2900	0.60	-1.2
3,448,776	-		Sama_2900	0.60	-0.5
3,448,776	-		Sama_2900	0.60	-0.4
3,448,776	-		Sama_2900	0.60	-0.7
3,448,776	-		Sama_2900	0.60	-1.0
3,448,776	-		Sama_2900	0.60	-0.2
3,448,776	-		Sama_2900	0.60	+2.0
3,448,779	+		Sama_2900	0.61	-3.6
3,448,779	+		Sama_2900	0.61	+0.5
3,448,779	+		Sama_2900	0.61	+0.2
3,448,779	+		Sama_2900	0.61	+2.1
3,448,779	+		Sama_2900	0.61	-0.3
3,448,779	+		Sama_2900	0.61	-0.4
3,448,780	-		Sama_2900	0.61	-0.9
3,448,780	-		Sama_2900	0.61	-0.0
3,448,780	-		Sama_2900	0.61	-1.7
3,448,780	-		Sama_2900	0.61	-0.9
3,448,780	-		Sama_2900	0.61	+2.8
3,448,780	-		Sama_2900	0.61	-1.4
3,448,780	-		Sama_2900	0.61	+2.2
3,448,780	-		Sama_2900	0.61	-1.1
3,448,780	-		Sama_2900	0.61	+3.0
3,448,780	-		Sama_2900	0.61	+4.9
3,448,853	+		Sama_2900	0.68	-1.0
3,448,853	+		Sama_2900	0.68	-0.4
3,448,853	+		Sama_2900	0.68	-0.6
3,448,853	+		Sama_2900	0.68	-1.1
3,448,854	-		Sama_2900	0.68	-1.0
3,448,854	-		Sama_2900	0.68	-2.2
3,448,854	-		Sama_2900	0.68	-2.0
3,448,854	-		Sama_2900	0.68	-2.1
3,448,854	-		Sama_2900	0.68	-2.4
3,448,946	+		Sama_2900	0.78	-1.4
3,448,947	-		Sama_2900	0.78	-3.0
3,448,947	-		Sama_2900	0.78	+1.3
3,448,990	-		Sama_2900	0.82	+0.4
3,449,032	+		Sama_2900	0.86	-0.6
3,449,033	-		Sama_2900	0.87	+0.4
3,449,033	-		Sama_2900	0.87	-1.7
3,449,033	-		Sama_2900	0.87	-0.2
3,449,061	+		Sama_2900	0.89	+0.6
3,449,062	-		Sama_2900	0.90	+5.5
3,449,114	-				+3.7
3,449,117	-				-2.3
3,449,133	+				+0.2
3,449,271	-				-2.0
3,449,277	+				-0.9
3,449,320	-				-1.3
3,449,363	+				-0.7
3,449,363	+				-0.0
3,449,364	-				+1.4
3,449,385	+				-0.9
3,449,401	-				-1.5
3,449,405	-				-0.1
3,449,479	-				+0.1
3,449,565	+				+1.0
3,449,583	+				-2.0
3,449,585	+				+1.6
3,449,585	+				-0.3
3,449,586	-				-2.1
3,449,655	+		Sama_2901	0.22	+1.1
3,449,655	+		Sama_2901	0.22	-1.8
3,449,744	+		Sama_2901	0.39	-1.7
3,449,744	+		Sama_2901	0.39	-1.1
3,449,745	-		Sama_2901	0.39	+1.1
3,449,767	+		Sama_2901	0.44	+0.3
3,449,801	+		Sama_2901	0.50	+3.8
3,449,801	+		Sama_2901	0.50	+0.2
3,449,801	+		Sama_2901	0.50	-0.5
3,449,801	+		Sama_2901	0.50	-1.0
3,449,801	+		Sama_2901	0.50	-2.4
3,449,802	-		Sama_2901	0.50	-1.4
3,449,802	-		Sama_2901	0.50	-3.0
3,449,802	-		Sama_2901	0.50	+3.7
3,449,850	+		Sama_2901	0.60	+0.6
3,449,851	-		Sama_2901	0.60	+0.5
3,449,872	+		Sama_2901	0.64	-1.3
3,449,873	-		Sama_2901	0.64	+0.3
3,449,978	+		Sama_2901	0.85	+3.9
3,449,984	+		Sama_2901	0.86	-1.5
3,449,985	-		Sama_2901	0.86	+2.4
3,449,985	-		Sama_2901	0.86	-2.1
3,449,991	+		Sama_2901	0.87	-0.9
3,449,994	+		Sama_2901	0.88	+0.3
3,449,995	-		Sama_2901	0.88	-0.9
3,450,059	+				-1.7
3,450,059	+				+0.6
3,450,141	+				-0.5
3,450,141	+				+0.9
3,450,141	+				+0.6
3,450,141	+				+1.6
3,450,142	-				-1.7
3,450,142	-				-0.4
3,450,142	-				+1.7
3,450,142	-				-0.6
3,450,142	-				+0.6
3,450,142	-				-1.6
3,450,142	-				-2.2
3,450,142	-				+0.2
3,450,151	+				-1.6
3,450,152	+				-1.4
3,450,152	+				-1.1
3,450,152	+				+0.7
3,450,152	+				-2.1
3,450,152	+				+1.0
3,450,152	+				-0.7
3,450,152	+				+3.2
3,450,152	+				+0.4
3,450,152	+				-2.3
3,450,152	+				-0.9
3,450,152	+				-1.4
3,450,152	+				-0.7
3,450,152	+				-1.2
3,450,152	+				-1.0
3,450,152	+				-1.8
3,450,152	+				-2.5
3,450,152	+				-0.8
3,450,153	-				+1.4
3,450,153	-				+1.6
3,450,153	-				-1.3
3,450,153	-				-0.5
3,450,153	-				+3.1
3,450,153	-				-1.0
3,450,153	-				-0.9
3,450,153	-				-2.0
3,450,153	-				-1.2
3,450,153	-				-1.3
3,450,153	-				+2.1
3,450,153	-				+0.4
3,450,153	-				-0.9
3,450,153	-				-1.2
3,450,153	-				-1.9
3,450,153	-				-0.9
3,450,153	-				-1.3
3,450,153	-				+2.9
3,450,165	-				+2.5
3,450,165	-				+3.7
3,450,165	-				-1.4
3,450,165	-				-1.4
3,450,173	+				-0.5
3,450,173	+				+4.1
3,450,173	+				-2.3
3,450,173	+				+3.6
3,450,173	+				-0.8
3,450,174	-				+1.9
3,450,232	+		Sama_2902	0.17	-0.7
3,450,232	+		Sama_2902	0.17	+0.7
3,450,263	+		Sama_2902	0.24	+1.3
3,450,263	+		Sama_2902	0.24	-0.0
3,450,263	+		Sama_2902	0.24	-0.6
3,450,263	+		Sama_2902	0.24	-1.2
3,450,263	+		Sama_2902	0.24	+1.8
3,450,275	+		Sama_2902	0.26	+0.4
3,450,301	+		Sama_2902	0.32	-0.4
3,450,301	+		Sama_2902	0.32	-1.2
3,450,301	+		Sama_2902	0.32	+3.4
3,450,301	+		Sama_2902	0.32	+0.0
3,450,302	-		Sama_2902	0.32	-0.8
3,450,302	-		Sama_2902	0.32	+1.7
3,450,302	-		Sama_2902	0.32	+0.5
3,450,302	-		Sama_2902	0.32	+1.3
3,450,302	-		Sama_2902	0.32	-0.6
3,450,302	-		Sama_2902	0.32	+0.2
3,450,302	-		Sama_2902	0.32	-0.2
3,450,302	-		Sama_2902	0.32	-0.7
3,450,302	-		Sama_2902	0.32	+0.0
3,450,380	+		Sama_2902	0.49	-0.8
3,450,380	+		Sama_2902	0.49	-1.9
3,450,381	-		Sama_2902	0.49	+1.3
3,450,384	-		Sama_2902	0.50	-2.5
3,450,384	-		Sama_2902	0.50	-0.4
3,450,575	+				+3.1
3,450,575	+				-0.4
3,450,575	+				-0.2
3,450,576	-				-1.3
3,450,612	+				+3.7
3,450,612	+				-0.2
3,450,613	-				-0.2
3,450,613	-				-0.7
3,450,613	-				+4.2
3,450,613	-				+0.5
3,450,613	-				-0.7
3,450,613	-				-2.5
3,450,613	-				+1.3
3,450,629	+				+1.7
3,450,629	+				-2.3
3,450,629	+				+0.3
3,450,629	+				-2.1
3,450,630	-				-1.4
3,450,630	-				-2.0
3,450,630	-				+4.5
3,450,630	-				+0.7
3,450,630	-				-1.6
3,450,630	-				+4.2
3,450,630	-				+0.1
3,450,688	+				+3.8
3,450,688	+				-0.9
3,450,689	-				+1.0
3,450,689	-				-0.2
3,450,689	-				+2.3
3,450,754	+		Sama_2903	0.19	+1.8
3,450,754	+		Sama_2903	0.19	+1.1
3,450,754	+		Sama_2903	0.19	-0.5
3,450,755	-		Sama_2903	0.19	-0.2
3,450,755	-		Sama_2903	0.19	-1.3
3,450,755	-		Sama_2903	0.19	-0.6
3,450,755	-		Sama_2903	0.19	+0.0
3,450,793	-		Sama_2903	0.24	-1.2
3,450,793	-		Sama_2903	0.24	-1.3
3,450,793	-		Sama_2903	0.24	+0.9
3,450,793	-		Sama_2903	0.24	+1.1
3,450,857	+		Sama_2903	0.33	-2.6
3,450,858	-		Sama_2903	0.34	-1.9
3,450,858	-		Sama_2903	0.34	-0.6
3,450,858	-		Sama_2903	0.34	-0.6
3,450,888	+		Sama_2903	0.38	+1.3
3,450,898	+		Sama_2903	0.39	+0.2
3,450,898	+		Sama_2903	0.39	-0.4
3,450,898	+		Sama_2903	0.39	-0.5
3,450,898	+		Sama_2903	0.39	+2.5
3,450,973	+		Sama_2903	0.50	+0.6
3,450,973	+		Sama_2903	0.50	-1.7
3,450,973	+		Sama_2903	0.50	-2.4
3,450,973	+		Sama_2903	0.50	+0.2
3,450,973	+		Sama_2903	0.50	-0.3
3,450,973	+		Sama_2903	0.50	+3.4
3,450,973	+		Sama_2903	0.50	-0.3
3,450,973	+		Sama_2903	0.50	-0.8
3,450,974	-		Sama_2903	0.50	-0.0
3,450,974	-		Sama_2903	0.50	+1.2
3,450,974	-		Sama_2903	0.50	-0.3
3,450,974	-		Sama_2903	0.50	-1.1
3,450,974	-		Sama_2903	0.50	-0.5
3,450,976	-		Sama_2903	0.51	+0.2
3,451,033	+		Sama_2903	0.59	-1.3
3,451,034	-		Sama_2903	0.59	+0.6