Strain Fitness in Shewanella amazonensis SB2B around Sama_2800

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,338,706	-		Sama_2798	0.33	-0.2
3,338,706	-		Sama_2798	0.33	+0.5
3,338,752	-		Sama_2798	0.38	+0.9
3,338,771	+		Sama_2798	0.40	+1.4
3,338,771	+		Sama_2798	0.40	-0.6
3,338,771	+		Sama_2798	0.40	-1.6
3,338,847	-		Sama_2798	0.49	-0.2
3,338,851	+		Sama_2798	0.49	-0.8
3,338,852	-		Sama_2798	0.49	+0.2
3,338,870	+		Sama_2798	0.51	-0.2
3,338,870	+		Sama_2798	0.51	-0.6
3,338,870	+		Sama_2798	0.51	+0.6
3,338,871	-		Sama_2798	0.52	-0.7
3,338,876	+		Sama_2798	0.52	+3.2
3,338,876	+		Sama_2798	0.52	-0.3
3,338,876	+		Sama_2798	0.52	-1.6
3,338,876	+		Sama_2798	0.52	-0.8
3,338,877	-		Sama_2798	0.52	-0.7
3,338,877	-		Sama_2798	0.52	-0.9
3,338,877	-		Sama_2798	0.52	+0.3
3,338,877	-		Sama_2798	0.52	-1.2
3,338,877	-		Sama_2798	0.52	+0.4
3,338,880	+		Sama_2798	0.53	-0.1
3,338,880	+		Sama_2798	0.53	+0.0
3,338,881	-		Sama_2798	0.53	-1.3
3,338,881	-		Sama_2798	0.53	-0.6
3,338,881	-		Sama_2798	0.53	+0.1
3,338,881	-		Sama_2798	0.53	-2.0
3,338,901	+		Sama_2798	0.55	-0.6
3,338,901	+		Sama_2798	0.55	+2.5
3,338,902	-		Sama_2798	0.55	+0.3
3,338,902	-		Sama_2798	0.55	-0.3
3,338,902	-		Sama_2798	0.55	+0.2
3,338,902	-		Sama_2798	0.55	+1.0
3,338,907	+		Sama_2798	0.56	-0.9
3,338,907	+		Sama_2798	0.56	+0.9
3,338,907	+		Sama_2798	0.56	+1.0
3,338,907	+		Sama_2798	0.56	-1.6
3,338,908	-		Sama_2798	0.56	-1.5
3,338,908	-		Sama_2798	0.56	+3.3
3,338,908	-		Sama_2798	0.56	-0.9
3,338,908	-		Sama_2798	0.56	+0.2
3,338,908	-		Sama_2798	0.56	+0.6
3,338,908	-		Sama_2798	0.56	+1.5
3,338,908	-		Sama_2798	0.56	-2.6
3,338,926	+		Sama_2798	0.58	-1.0
3,338,994	+		Sama_2798	0.65	-2.0
3,338,994	+		Sama_2798	0.65	-1.2
3,338,994	+		Sama_2798	0.65	+1.3
3,338,994	+		Sama_2798	0.65	+1.0
3,338,994	+		Sama_2798	0.65	-0.1
3,338,995	-		Sama_2798	0.66	+2.4
3,338,995	-		Sama_2798	0.66	-1.2
3,338,995	-		Sama_2798	0.66	-1.2
3,339,008	+		Sama_2798	0.67	+1.6
3,339,016	+		Sama_2798	0.68	-0.6
3,339,016	+		Sama_2798	0.68	+2.6
3,339,017	-		Sama_2798	0.68	-0.8
3,339,069	+		Sama_2798	0.74	-1.5
3,339,069	+		Sama_2798	0.74	+0.1
3,339,069	+		Sama_2798	0.74	+1.1
3,339,069	+		Sama_2798	0.74	+1.1
3,339,069	+		Sama_2798	0.74	-1.4
3,339,069	+		Sama_2798	0.74	-0.5
3,339,069	+		Sama_2798	0.74	-1.2
3,339,069	+		Sama_2798	0.74	-0.8
3,339,069	+		Sama_2798	0.74	+0.4
3,339,069	+		Sama_2798	0.74	+0.3
3,339,069	+		Sama_2798	0.74	+0.2
3,339,069	+		Sama_2798	0.74	-2.6
3,339,069	+		Sama_2798	0.74	-2.1
3,339,070	-		Sama_2798	0.74	-0.6
3,339,070	-		Sama_2798	0.74	+0.0
3,339,070	-		Sama_2798	0.74	-1.8
3,339,070	-		Sama_2798	0.74	+1.5
3,339,072	+		Sama_2798	0.74	-1.8
3,339,072	+		Sama_2798	0.74	-0.6
3,339,072	+		Sama_2798	0.74	-1.1
3,339,072	+		Sama_2798	0.74	-0.6
3,339,072	+		Sama_2798	0.74	+1.5
3,339,073	-		Sama_2798	0.74	+2.2
3,339,075	+		Sama_2798	0.75	+2.8
3,339,083	-		Sama_2798	0.75	+0.4
3,339,172	+		Sama_2798	0.86	-1.8
3,339,172	+		Sama_2798	0.86	+1.3
3,339,173	-		Sama_2798	0.86	-0.5
3,339,207	+		Sama_2798	0.89	+0.8
3,339,207	+		Sama_2798	0.89	+0.3
3,339,208	-		Sama_2798	0.90	-2.8
3,339,224	+				-2.5
3,339,229	+				-1.3
3,339,230	-				-1.6
3,339,230	-				+0.3
3,339,230	-				-1.4
3,339,264	+				-0.2
3,339,264	+				+0.9
3,339,264	+				-1.9
3,339,264	+				-0.5
3,339,264	+				-1.6
3,339,264	+				-2.1
3,339,264	+				-1.5
3,339,265	-				-1.2
3,339,265	-				-1.3
3,339,265	-				+0.8
3,339,265	-				+2.0
3,339,265	-				+0.2
3,339,265	-				+0.1
3,339,265	-				-0.3
3,339,271	-				-0.4
3,339,271	-				-1.7
3,339,288	+				+0.2
3,339,290	+				-1.5
3,339,290	+				-0.8
3,339,290	+				-2.5
3,339,290	+				-1.3
3,339,291	-				-0.7
3,339,291	-				-0.6
3,339,291	-				-1.9
3,339,291	-				+0.2
3,339,327	+				-1.8
3,339,327	+				-1.5
3,339,327	+				-0.5
3,339,328	-				-2.6
3,339,328	-				+1.3
3,339,342	+		Sama_2799	0.11	-1.2
3,339,342	+		Sama_2799	0.11	-1.6
3,339,343	-		Sama_2799	0.11	-0.0
3,339,343	-		Sama_2799	0.11	-0.2
3,339,343	-		Sama_2799	0.11	+0.7
3,339,461	-		Sama_2799	0.40	+0.0
3,339,461	-		Sama_2799	0.40	-0.9
3,339,468	-		Sama_2799	0.42	-0.0
3,339,468	-		Sama_2799	0.42	-1.8
3,339,468	-		Sama_2799	0.42	+0.4
3,339,495	+		Sama_2799	0.49	+1.4
3,339,495	+		Sama_2799	0.49	+1.3
3,339,510	+		Sama_2799	0.52	-0.0
3,339,525	+		Sama_2799	0.56	-2.3
3,339,526	-		Sama_2799	0.56	-0.9
3,339,526	-		Sama_2799	0.56	-2.0
3,339,566	-		Sama_2799	0.66	+2.4
3,339,571	+		Sama_2799	0.68	+2.0
3,339,607	+		Sama_2799	0.77	+1.2
3,339,607	+		Sama_2799	0.77	-2.7
3,339,640	+		Sama_2799	0.85	+0.8
3,339,641	-		Sama_2799	0.85	-1.2
3,339,713	+				-0.6
3,339,713	+				+1.7
3,339,714	-				+1.0
3,339,725	+				+0.9
3,339,725	+				+0.6
3,339,726	-				+0.2
3,339,726	-				-2.0
3,339,726	-				-1.9
3,339,726	-				+3.4
3,339,726	-				+2.7
3,339,773	-		Sama_2800	0.10	-0.3
3,339,773	-		Sama_2800	0.10	-2.9
3,339,789	+		Sama_2800	0.13	+2.3
3,339,789	+		Sama_2800	0.13	-0.3
3,339,790	-		Sama_2800	0.13	-0.7
3,339,790	-		Sama_2800	0.13	-0.2
3,339,790	-		Sama_2800	0.13	+0.3
3,339,790	-		Sama_2800	0.13	+1.7
3,339,819	+		Sama_2800	0.17	+0.4
3,339,820	-		Sama_2800	0.17	+0.0
3,339,824	+		Sama_2800	0.17	+0.2
3,339,824	+		Sama_2800	0.17	+6.7
3,339,825	-		Sama_2800	0.18	-3.2
3,339,825	-		Sama_2800	0.18	-0.9
3,339,844	+		Sama_2800	0.20	+2.6
3,339,845	-		Sama_2800	0.20	-1.4
3,339,845	-		Sama_2800	0.20	-1.5
3,339,860	+		Sama_2800	0.23	-1.5
3,339,860	+		Sama_2800	0.23	+0.5
3,339,860	+		Sama_2800	0.23	+0.2
3,339,860	+		Sama_2800	0.23	+1.3
3,339,860	+		Sama_2800	0.23	-0.6
3,339,861	-		Sama_2800	0.23	+0.6
3,339,861	-		Sama_2800	0.23	-0.0
3,339,861	-		Sama_2800	0.23	+0.7
3,339,861	-		Sama_2800	0.23	-1.0
3,339,861	-		Sama_2800	0.23	-1.2
3,339,861	-		Sama_2800	0.23	-1.9
3,339,861	-		Sama_2800	0.23	+0.6
3,339,861	-		Sama_2800	0.23	-0.4
3,339,861	-		Sama_2800	0.23	+3.1
3,339,922	+		Sama_2800	0.31	+2.2
3,339,923	-		Sama_2800	0.31	-1.8
3,340,006	+		Sama_2800	0.43	+3.2
3,340,006	+		Sama_2800	0.43	+2.6
3,340,006	+		Sama_2800	0.43	-1.0
3,340,006	+		Sama_2800	0.43	-2.0
3,340,006	+		Sama_2800	0.43	+0.5
3,340,006	+		Sama_2800	0.43	+3.1
3,340,006	+		Sama_2800	0.43	-1.5
3,340,007	-		Sama_2800	0.43	+1.0
3,340,007	-		Sama_2800	0.43	+0.8
3,340,007	-		Sama_2800	0.43	-0.6
3,340,007	-		Sama_2800	0.43	-1.4
3,340,007	-		Sama_2800	0.43	+2.3
3,340,007	-		Sama_2800	0.43	+0.7
3,340,105	-		Sama_2800	0.57	-1.0
3,340,124	+		Sama_2800	0.60	+1.4
3,340,124	+		Sama_2800	0.60	-2.0
3,340,124	+		Sama_2800	0.60	-0.1
3,340,124	+		Sama_2800	0.60	-1.2
3,340,124	+		Sama_2800	0.60	-1.7
3,340,125	-		Sama_2800	0.60	+1.5
3,340,125	-		Sama_2800	0.60	-1.2
3,340,125	-		Sama_2800	0.60	+0.8
3,340,125	-		Sama_2800	0.60	-1.8
3,340,125	-		Sama_2800	0.60	+2.3
3,340,125	-		Sama_2800	0.60	+0.5
3,340,125	-		Sama_2800	0.60	-2.2
3,340,145	+		Sama_2800	0.63	-0.8
3,340,145	+		Sama_2800	0.63	-0.0
3,340,145	+		Sama_2800	0.63	-0.1
3,340,145	+		Sama_2800	0.63	+0.4
3,340,146	-		Sama_2800	0.63	-1.1
3,340,226	+		Sama_2800	0.74	-1.1
3,340,227	-		Sama_2800	0.74	-1.5
3,340,240	+		Sama_2800	0.76	+0.8
3,340,240	+		Sama_2800	0.76	-0.5
3,340,240	+		Sama_2800	0.76	+2.3
3,340,241	-		Sama_2800	0.76	+0.8
3,340,242	+		Sama_2800	0.76	+0.0
3,340,242	+		Sama_2800	0.76	-0.3
3,340,242	+		Sama_2800	0.76	+2.0
3,340,242	+		Sama_2800	0.76	-1.5
3,340,242	+		Sama_2800	0.76	+0.5
3,340,242	+		Sama_2800	0.76	+1.2
3,340,242	+		Sama_2800	0.76	-0.5
3,340,242	+		Sama_2800	0.76	+1.0
3,340,242	+		Sama_2800	0.76	+1.5
3,340,242	+		Sama_2800	0.76	+0.4
3,340,242	+		Sama_2800	0.76	+1.0
3,340,243	-		Sama_2800	0.76	-2.4
3,340,243	-		Sama_2800	0.76	+2.4
3,340,243	-		Sama_2800	0.76	-0.7
3,340,243	-		Sama_2800	0.76	-2.3
3,340,243	-		Sama_2800	0.76	-2.0
3,340,243	-		Sama_2800	0.76	+0.3
3,340,243	-		Sama_2800	0.76	-0.4
3,340,243	-		Sama_2800	0.76	+0.7
3,340,246	+		Sama_2800	0.77	-2.5
3,340,246	+		Sama_2800	0.77	-1.2
3,340,246	+		Sama_2800	0.77	+0.3
3,340,246	+		Sama_2800	0.77	-1.2
3,340,246	+		Sama_2800	0.77	+1.2
3,340,246	+		Sama_2800	0.77	+2.0
3,340,247	-		Sama_2800	0.77	+0.0
3,340,317	+		Sama_2800	0.87	+3.2
3,340,356	+				-0.7
3,340,378	+				-2.0
3,340,378	+				+0.2
3,340,379	-				+1.7
3,340,408	+				+2.9
3,340,408	+				-2.6
3,340,408	+				+3.7
3,340,409	-				-0.5
3,340,409	-				+0.2
3,340,409	-				+0.4
3,340,409	-				+0.3
3,340,438	+				-1.7
3,340,438	+				-1.2
3,340,439	-				+1.7
3,340,439	-				+2.1
3,340,439	-				-0.2
3,340,439	-				+1.4
3,340,650	-		Sama_2801	0.19	+2.6
3,340,692	+		Sama_2801	0.22	+0.8
3,340,693	-		Sama_2801	0.22	-2.3
3,340,693	-		Sama_2801	0.22	+0.4
3,340,803	+		Sama_2801	0.31	+0.0
3,340,803	+		Sama_2801	0.31	-1.4
3,340,803	+		Sama_2801	0.31	-2.5
3,340,803	+		Sama_2801	0.31	-0.0
3,340,804	-		Sama_2801	0.31	-0.4
3,340,877	+		Sama_2801	0.37	+2.8
3,340,968	+		Sama_2801	0.44	+1.8
3,341,148	+		Sama_2801	0.58	+3.2
3,341,148	+		Sama_2801	0.58	-1.9
3,341,148	+		Sama_2801	0.58	+0.1
3,341,148	+		Sama_2801	0.58	-2.9
3,341,148	+		Sama_2801	0.58	+1.6
3,341,148	+		Sama_2801	0.58	-1.2
3,341,149	-		Sama_2801	0.58	-0.3
3,341,161	-		Sama_2801	0.59	-2.0
3,341,200	+		Sama_2801	0.62	+0.0
3,341,200	+		Sama_2801	0.62	+0.1
3,341,200	+		Sama_2801	0.62	-1.8
3,341,201	-		Sama_2801	0.62	-0.7
3,341,201	-		Sama_2801	0.62	+1.6
3,341,201	-		Sama_2801	0.62	-0.5
3,341,201	-		Sama_2801	0.62	-2.1