Strain Fitness in Shewanella amazonensis SB2B around Sama_2609

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
3,123,620	+		Sama_2608	0.44	+5.3
3,123,620	+		Sama_2608	0.44	+1.3
3,123,621	-		Sama_2608	0.44	-1.6
3,123,639	+		Sama_2608	0.45	-1.0
3,123,639	+		Sama_2608	0.45	+4.2
3,123,639	+		Sama_2608	0.45	-1.1
3,123,640	-		Sama_2608	0.45	+2.1
3,123,640	-		Sama_2608	0.45	+1.0
3,123,640	-		Sama_2608	0.45	-0.9
3,123,672	+		Sama_2608	0.47	-0.7
3,123,672	+		Sama_2608	0.47	-1.1
3,123,672	+		Sama_2608	0.47	+5.6
3,123,719	+		Sama_2608	0.50	-1.0
3,123,719	+		Sama_2608	0.50	-1.1
3,123,719	+		Sama_2608	0.50	-1.4
3,123,720	-		Sama_2608	0.50	+0.8
3,123,780	+		Sama_2608	0.54	-1.5
3,123,780	+		Sama_2608	0.54	+2.0
3,123,780	+		Sama_2608	0.54	-1.0
3,123,780	+		Sama_2608	0.54	+2.0
3,123,849	+		Sama_2608	0.59	+0.4
3,123,850	-		Sama_2608	0.59	-3.2
3,123,873	-		Sama_2608	0.60	-0.4
3,123,873	-		Sama_2608	0.60	-0.2
3,123,904	-		Sama_2608	0.62	-1.0
3,123,918	-		Sama_2608	0.63	-1.0
3,123,918	-		Sama_2608	0.63	-0.8
3,123,935	+		Sama_2608	0.64	-2.0
3,123,935	+		Sama_2608	0.64	-2.9
3,123,936	-		Sama_2608	0.64	-0.5
3,123,953	+		Sama_2608	0.65	-1.8
3,123,953	+		Sama_2608	0.65	-1.2
3,123,954	-		Sama_2608	0.65	-1.1
3,123,954	-		Sama_2608	0.65	+3.2
3,123,971	+		Sama_2608	0.66	+0.5
3,123,972	-		Sama_2608	0.66	+3.0
3,123,972	-		Sama_2608	0.66	-1.7
3,123,993	+		Sama_2608	0.68	-0.0
3,123,993	+		Sama_2608	0.68	-1.6
3,123,993	+		Sama_2608	0.68	+0.3
3,123,993	+		Sama_2608	0.68	-1.3
3,123,994	-		Sama_2608	0.68	-2.0
3,123,994	-		Sama_2608	0.68	+4.6
3,124,025	+		Sama_2608	0.70	+1.0
3,124,067	+		Sama_2608	0.73	+0.7
3,124,068	-		Sama_2608	0.73	-0.4
3,124,068	-		Sama_2608	0.73	-1.0
3,124,068	-		Sama_2608	0.73	-3.1
3,124,068	-		Sama_2608	0.73	+0.5
3,124,092	+		Sama_2608	0.74	-1.6
3,124,092	+		Sama_2608	0.74	-1.0
3,124,092	+		Sama_2608	0.74	-2.8
3,124,092	+		Sama_2608	0.74	-0.5
3,124,156	+		Sama_2608	0.78	-1.0
3,124,156	+		Sama_2608	0.78	+0.3
3,124,157	-		Sama_2608	0.78	-1.7
3,124,164	+		Sama_2608	0.79	+0.2
3,124,173	-		Sama_2608	0.79	-0.4
3,124,182	-		Sama_2608	0.80	-1.2
3,124,232	-		Sama_2608	0.83	+0.5
3,124,232	-		Sama_2608	0.83	+0.4
3,124,247	+		Sama_2608	0.84	+3.6
3,124,248	-		Sama_2608	0.84	+1.4
3,124,271	+		Sama_2608	0.85	+3.2
3,124,271	+		Sama_2608	0.85	-1.0
3,124,272	-		Sama_2608	0.86	+0.0
3,124,300	+		Sama_2608	0.87	-1.3
3,124,300	+		Sama_2608	0.87	-1.2
3,124,300	+		Sama_2608	0.87	-1.4
3,124,300	+		Sama_2608	0.87	-0.3
3,124,301	-		Sama_2608	0.87	-1.9
3,124,301	-		Sama_2608	0.87	+1.2
3,124,353	-				+0.7
3,124,353	-				-0.0
3,124,362	+				+0.3
3,124,363	-				-0.9
3,124,457	+				+1.0
3,124,457	+				-1.0
3,124,457	+				+0.9
3,124,458	-				+5.1
3,124,458	-				-0.5
3,124,467	-				-0.8
3,124,467	-				+3.2
3,124,467	-				-0.4
3,124,478	+				+0.6
3,124,478	+				-1.4
3,124,478	+				+0.6
3,124,478	+				-1.7
3,124,479	-				-1.0
3,124,499	+				+1.9
3,124,505	+				-0.9
3,124,506	-				-1.7
3,124,506	-				-1.6
3,124,527	+				-0.3
3,124,527	+				-0.5
3,124,528	-				-1.1
3,124,528	-				-0.5
3,124,533	+				-2.1
3,124,637	+				+0.9
3,124,638	-				+0.1
3,124,734	+				-0.1
3,124,780	+				+0.9
3,124,823	-		Sama_2609	0.12	+0.7
3,124,823	-		Sama_2609	0.12	+0.9
3,124,839	+		Sama_2609	0.13	+1.7
3,124,840	-		Sama_2609	0.13	-0.3
3,124,939	-		Sama_2609	0.18	-0.8
3,125,068	+		Sama_2609	0.25	-1.1
3,125,088	+		Sama_2609	0.26	+1.3
3,125,116	+		Sama_2609	0.28	+0.2
3,125,117	-		Sama_2609	0.28	-1.9
3,125,117	-		Sama_2609	0.28	-0.5
3,125,117	-		Sama_2609	0.28	+1.3
3,125,167	-		Sama_2609	0.30	-1.2
3,125,225	-		Sama_2609	0.33	-1.3
3,125,244	+		Sama_2609	0.35	-1.0
3,125,245	-		Sama_2609	0.35	+2.7
3,125,245	-		Sama_2609	0.35	-1.4
3,125,245	-		Sama_2609	0.35	-2.5
3,125,245	-		Sama_2609	0.35	+0.1
3,125,245	-		Sama_2609	0.35	-1.3
3,125,245	-		Sama_2609	0.35	+3.4
3,125,322	+		Sama_2609	0.39	-2.3
3,125,323	-		Sama_2609	0.39	-3.1
3,125,323	-		Sama_2609	0.39	-1.5
3,125,326	+		Sama_2609	0.39	-2.1
3,125,326	+		Sama_2609	0.39	-1.9
3,125,326	+		Sama_2609	0.39	+3.7
3,125,326	+		Sama_2609	0.39	+1.1
3,125,327	-		Sama_2609	0.39	+1.0
3,125,327	-		Sama_2609	0.39	-1.7
3,125,327	-		Sama_2609	0.39	-1.1
3,125,327	-		Sama_2609	0.39	-1.9
3,125,327	-		Sama_2609	0.39	-0.7
3,125,352	+		Sama_2609	0.40	-0.0
3,125,352	+		Sama_2609	0.40	+0.5
3,125,352	+		Sama_2609	0.40	-0.3
3,125,352	+		Sama_2609	0.40	-1.7
3,125,353	-		Sama_2609	0.40	+1.6
3,125,353	-		Sama_2609	0.40	+1.0
3,125,353	-		Sama_2609	0.40	+1.6
3,125,353	-		Sama_2609	0.40	+5.9
3,125,353	-		Sama_2609	0.40	+0.5
3,125,353	-		Sama_2609	0.40	-0.3
3,125,353	-		Sama_2609	0.40	+0.1
3,125,432	-		Sama_2609	0.45	-0.1
3,125,442	+		Sama_2609	0.45	+0.2
3,125,571	+		Sama_2609	0.52	+0.6
3,125,571	+		Sama_2609	0.52	+2.7
3,125,607	+		Sama_2609	0.54	+0.2
3,125,608	-		Sama_2609	0.54	+0.7
3,125,608	-		Sama_2609	0.54	-3.3
3,125,608	-		Sama_2609	0.54	+2.6
3,125,608	-		Sama_2609	0.54	-0.4
3,125,620	-		Sama_2609	0.55	+0.4
3,125,620	-		Sama_2609	0.55	+3.8
3,125,620	-		Sama_2609	0.55	-0.8
3,125,805	+		Sama_2609	0.65	-1.7
3,125,806	-		Sama_2609	0.65	-1.1
3,125,806	-		Sama_2609	0.65	-2.4
3,125,806	-		Sama_2609	0.65	+1.5
3,125,809	-		Sama_2609	0.65	+5.5
3,125,835	-		Sama_2609	0.66	-0.4
3,125,835	-		Sama_2609	0.66	+2.0
3,125,932	-		Sama_2609	0.71	-1.5
3,125,940	-		Sama_2609	0.72	+1.4
3,125,989	+		Sama_2609	0.74	+0.0
3,125,989	+		Sama_2609	0.74	+0.0
3,125,989	+		Sama_2609	0.74	+0.9
3,125,989	+		Sama_2609	0.74	+1.4
3,125,990	-		Sama_2609	0.74	-1.0
3,125,990	-		Sama_2609	0.74	-1.3
3,125,999	-		Sama_2609	0.75	-1.3
3,126,016	-		Sama_2609	0.76	+1.0
3,126,016	-		Sama_2609	0.76	-1.0
3,126,016	-		Sama_2609	0.76	-1.8
3,126,016	-		Sama_2609	0.76	+0.2
3,126,032	-		Sama_2609	0.77	+0.0
3,126,071	+		Sama_2609	0.79	+0.5
3,126,071	+		Sama_2609	0.79	-0.7
3,126,072	-		Sama_2609	0.79	-1.0
3,126,072	-		Sama_2609	0.79	-0.8
3,126,072	-		Sama_2609	0.79	+2.7
3,126,072	-		Sama_2609	0.79	-1.6
3,126,072	-		Sama_2609	0.79	-0.4
3,126,110	-		Sama_2609	0.81	-2.9
3,126,140	+		Sama_2609	0.83	-0.8
3,126,141	-		Sama_2609	0.83	-2.8
3,126,202	+		Sama_2609	0.86	-0.3
3,126,267	-		Sama_2609	0.89	+0.2
3,126,267	-		Sama_2609	0.89	-0.1
3,126,267	-		Sama_2609	0.89	-0.9
3,126,267	-		Sama_2609	0.89	+4.5
3,126,267	-		Sama_2609	0.89	+2.2
3,126,274	-		Sama_2609	0.90	-2.4
3,126,274	-		Sama_2609	0.90	-2.7
3,126,286	+				+0.7
3,126,387	-				+0.8
3,126,387	-				+3.4
3,126,421	+				+0.1
3,126,421	+				-0.0
3,126,468	+				-0.3
3,126,469	-				+1.5
3,126,469	-				-0.3
3,126,469	-				-0.9
3,126,469	-				-1.3
3,126,469	-				+0.0
3,126,482	-				+1.0
3,126,482	-				-0.8
3,126,482	-				+0.1
3,126,482	-				+0.5
3,126,495	-				-0.7
3,126,495	-				+3.4
3,126,495	-				+1.2
3,126,500	+				+0.2
3,126,500	+				+0.9
3,126,500	+				-0.9
3,126,516	+				+2.3
3,126,516	+				-1.3
3,126,516	+				+0.5
3,126,516	+				-0.1
3,126,517	-				+1.5
3,126,517	-				-1.3
3,126,517	-				+0.8
3,126,527	+				+0.7
3,126,527	+				-1.8
3,126,527	+				-1.7
3,126,527	+				+0.6
3,126,528	-				+1.2
3,126,528	-				+3.3
3,126,528	-				+0.9
3,126,528	-				-3.2
3,126,528	-				-0.5
3,126,583	-				-0.5
3,126,583	-				+1.0
3,126,583	-				-0.4
3,126,594	+				-2.1
3,126,654	+				-0.3
3,126,679	+				-0.6
3,126,679	+				-2.6
3,126,680	-				+2.6
3,126,680	-				-1.6
3,126,698	-				-1.8
3,126,701	+				-1.3
3,126,701	+				+2.8
3,126,701	+				-1.1
3,126,702	-				+2.5
3,126,702	-				+2.7
3,126,702	-				-0.1
3,126,706	+				-2.1
3,126,725	-				-0.7
3,126,725	-				-0.5
3,126,737	-				-1.4
3,126,827	-				-0.9
3,126,827	-				-1.1
3,126,827	-				-1.6
3,126,827	-				-0.5
3,126,827	-				-1.0
3,126,827	-				-0.8
3,126,848	+		Sama_2610	0.12	+6.0
3,126,848	+		Sama_2610	0.12	-1.0
3,126,849	-		Sama_2610	0.12	+0.6
3,126,849	-		Sama_2610	0.12	-0.5
3,126,924	+		Sama_2610	0.20	-1.2
3,126,935	-		Sama_2610	0.21	+0.4
3,126,935	-		Sama_2610	0.21	+0.0
3,126,938	+		Sama_2610	0.21	-0.3
3,126,938	+		Sama_2610	0.21	+0.4
3,126,938	+		Sama_2610	0.21	+1.1
3,126,938	+		Sama_2610	0.21	+0.3
3,126,938	+		Sama_2610	0.21	-1.9
3,126,938	+		Sama_2610	0.21	-0.1
3,126,938	+		Sama_2610	0.21	-0.9
3,126,938	+		Sama_2610	0.21	-0.7
3,126,938	+		Sama_2610	0.21	+0.2
3,126,938	+		Sama_2610	0.21	-1.0
3,126,938	+		Sama_2610	0.21	-1.0
3,126,938	+		Sama_2610	0.21	-0.3
3,126,938	+		Sama_2610	0.21	+4.2
3,126,938	+		Sama_2610	0.21	-0.9
3,126,939	-		Sama_2610	0.21	-0.7
3,126,939	-		Sama_2610	0.21	-0.7
3,126,939	-		Sama_2610	0.21	-0.7
3,126,939	-		Sama_2610	0.21	-0.3
3,126,939	-		Sama_2610	0.21	+0.1
3,126,939	-		Sama_2610	0.21	+1.2
3,126,939	-		Sama_2610	0.21	+0.5
3,126,939	-		Sama_2610	0.21	-0.7
3,126,942	+		Sama_2610	0.21	-0.1
3,126,942	+		Sama_2610	0.21	-2.8
3,126,942	+		Sama_2610	0.21	-1.8
3,126,942	+		Sama_2610	0.21	+0.9
3,126,943	-		Sama_2610	0.22	+0.4
3,126,943	-		Sama_2610	0.22	-0.3
3,126,983	+		Sama_2610	0.26	-2.3
3,126,983	+		Sama_2610	0.26	+1.6
3,126,993	+		Sama_2610	0.27	-0.3
3,126,993	+		Sama_2610	0.27	-0.8
3,126,993	+		Sama_2610	0.27	-0.6
3,126,993	+		Sama_2610	0.27	-0.7
3,126,994	-		Sama_2610	0.27	+4.7
3,126,994	-		Sama_2610	0.27	+3.6
3,127,035	+		Sama_2610	0.31	-0.4
3,127,055	+		Sama_2610	0.33	-1.0
3,127,055	+		Sama_2610	0.33	-0.7
3,127,056	-		Sama_2610	0.33	+0.1
3,127,056	-		Sama_2610	0.33	-1.2
3,127,056	-		Sama_2610	0.33	-0.7
3,127,056	-		Sama_2610	0.33	+0.8
3,127,056	-		Sama_2610	0.33	-0.3
3,127,056	-		Sama_2610	0.33	-1.8
3,127,125	+		Sama_2610	0.41	-1.1
3,127,126	-		Sama_2610	0.41	+3.5
3,127,126	-		Sama_2610	0.41	-1.5
3,127,154	+		Sama_2610	0.44	-2.1
3,127,154	+		Sama_2610	0.44	-1.2
3,127,154	+		Sama_2610	0.44	-2.5
3,127,154	+		Sama_2610	0.44	-0.4
3,127,154	+		Sama_2610	0.44	-0.1
3,127,154	+		Sama_2610	0.44	-0.3
3,127,154	+		Sama_2610	0.44	-2.2
3,127,155	-		Sama_2610	0.44	-2.2
3,127,155	-		Sama_2610	0.44	+1.5
3,127,155	-		Sama_2610	0.44	-1.7
3,127,155	-		Sama_2610	0.44	-0.7
3,127,155	-		Sama_2610	0.44	-0.8
3,127,155	-		Sama_2610	0.44	-2.0
3,127,155	-		Sama_2610	0.44	+0.2
3,127,216	+		Sama_2610	0.50	-0.7
3,127,217	-		Sama_2610	0.50	-0.5
3,127,217	-		Sama_2610	0.50	+3.2
3,127,285	+		Sama_2610	0.57	-1.3
3,127,285	+		Sama_2610	0.57	+1.8
3,127,285	+		Sama_2610	0.57	-1.1
3,127,285	+		Sama_2610	0.57	-3.0
3,127,286	-		Sama_2610	0.58	-1.5
3,127,286	-		Sama_2610	0.58	+0.0
3,127,460	+		Sama_2610	0.76	-0.2
3,127,460	+		Sama_2610	0.76	-1.3
3,127,460	+		Sama_2610	0.76	-0.8
3,127,460	+		Sama_2610	0.76	-0.9
3,127,460	+		Sama_2610	0.76	+0.8
3,127,461	-		Sama_2610	0.76	+0.8
3,127,461	-		Sama_2610	0.76	+0.2
3,127,461	-		Sama_2610	0.76	-0.1
3,127,464	+		Sama_2610	0.76	+0.4
3,127,464	+		Sama_2610	0.76	+2.3