Strain Fitness in Shewanella amazonensis SB2B around Sama_1553

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
1,888,831	+				-1.6
1,888,831	+				-0.9
1,888,832	-				+1.9
1,888,844	-				-1.7
1,889,798	+				+1.1
1,889,798	+				+1.0
1,889,851	-				-1.9
1,889,884	+				+0.3
1,889,885	-				-0.3
1,889,885	-				-2.1
1,889,921	-				-1.3
1,889,938	+				-0.7
1,889,938	+				-0.7
1,889,938	+				+2.4
1,889,938	+				-2.0
1,889,939	-				+1.4
1,889,939	-				-2.1
1,889,939	-				-0.5
1,889,939	-				-0.6
1,889,939	-				-1.9
1,889,939	-				-0.2
1,889,940	+				+1.7
1,889,940	+				-1.9
1,889,940	+				-1.2
1,889,940	+				-2.0
1,889,941	-				+0.1
1,889,941	-				-1.7
1,889,941	-				+1.0
1,889,941	-				+3.1
1,889,941	-				+0.7
1,889,941	-				-0.7
1,889,958	+				-1.0
1,890,005	+		Sama_1553	0.13	-0.9
1,890,049	+		Sama_1553	0.16	-0.5
1,890,049	+		Sama_1553	0.16	+1.0
1,890,049	+		Sama_1553	0.16	+1.5
1,890,050	-		Sama_1553	0.16	+1.1
1,890,050	-		Sama_1553	0.16	+1.7
1,890,053	+		Sama_1553	0.16	+0.5
1,890,054	-		Sama_1553	0.16	+0.3
1,890,092	+		Sama_1553	0.19	+0.8
1,890,093	-		Sama_1553	0.19	-1.2
1,890,097	-		Sama_1553	0.19	+0.8
1,890,108	+		Sama_1553	0.20	-0.5
1,890,149	+		Sama_1553	0.23	+0.4
1,890,149	+		Sama_1553	0.23	-1.7
1,890,149	+		Sama_1553	0.23	+2.2
1,890,149	+		Sama_1553	0.23	-1.6
1,890,149	+		Sama_1553	0.23	+2.3
1,890,150	-		Sama_1553	0.23	-2.2
1,890,183	+		Sama_1553	0.25	-1.2
1,890,184	-		Sama_1553	0.25	-0.7
1,890,184	-		Sama_1553	0.25	-0.3
1,890,186	+		Sama_1553	0.25	-0.0
1,890,186	+		Sama_1553	0.25	-2.4
1,890,186	+		Sama_1553	0.25	-1.0
1,890,186	+		Sama_1553	0.25	+1.6
1,890,187	-		Sama_1553	0.25	-1.0
1,890,187	-		Sama_1553	0.25	-1.4
1,890,187	-		Sama_1553	0.25	+2.2
1,890,187	-		Sama_1553	0.25	-1.2
1,890,187	-		Sama_1553	0.25	-1.6
1,890,215	+		Sama_1553	0.27	-1.1
1,890,216	-		Sama_1553	0.27	-1.7
1,890,216	-		Sama_1553	0.27	+1.0
1,890,250	+		Sama_1553	0.29	-1.3
1,890,250	+		Sama_1553	0.29	-0.5
1,890,250	+		Sama_1553	0.29	+3.6
1,890,251	-		Sama_1553	0.30	-2.2
1,890,251	-		Sama_1553	0.30	+0.1
1,890,251	-		Sama_1553	0.30	-0.8
1,890,261	+		Sama_1553	0.30	+4.6
1,890,261	+		Sama_1553	0.30	+1.0
1,890,261	+		Sama_1553	0.30	-0.5
1,890,261	+		Sama_1553	0.30	+0.1
1,890,261	+		Sama_1553	0.30	-2.2
1,890,262	-		Sama_1553	0.30	-2.0
1,890,262	-		Sama_1553	0.30	-1.9
1,890,262	-		Sama_1553	0.30	+5.6
1,890,262	-		Sama_1553	0.30	-0.7
1,890,328	+		Sama_1553	0.35	-0.2
1,890,355	-		Sama_1553	0.37	+0.6
1,890,365	-		Sama_1553	0.37	+0.3
1,890,392	+		Sama_1553	0.39	+2.1
1,890,392	+		Sama_1553	0.39	-1.2
1,890,392	+		Sama_1553	0.39	+0.6
1,890,392	+		Sama_1553	0.39	+2.1
1,890,393	-		Sama_1553	0.39	-0.9
1,890,393	-		Sama_1553	0.39	-0.1
1,890,393	-		Sama_1553	0.39	-3.0
1,890,395	-		Sama_1553	0.39	+0.5
1,890,461	-		Sama_1553	0.44	-0.5
1,890,602	+		Sama_1553	0.53	-0.8
1,890,618	-		Sama_1553	0.54	+0.2
1,890,618	-		Sama_1553	0.54	-0.8
1,890,726	+		Sama_1553	0.62	-0.7
1,890,727	-		Sama_1553	0.62	+3.1
1,890,798	+		Sama_1553	0.66	-1.4
1,890,827	+		Sama_1553	0.68	-2.1
1,890,827	+		Sama_1553	0.68	+0.5
1,890,827	+		Sama_1553	0.68	-1.2
1,890,827	+		Sama_1553	0.68	+1.3
1,890,828	-		Sama_1553	0.68	+3.3
1,890,828	-		Sama_1553	0.68	+1.9
1,890,828	-		Sama_1553	0.68	-0.5
1,890,841	+		Sama_1553	0.69	-0.8
1,890,900	-		Sama_1553	0.73	+0.3
1,890,913	+		Sama_1553	0.74	+0.2
1,890,913	+		Sama_1553	0.74	+1.7
1,890,913	+		Sama_1553	0.74	-0.2
1,890,914	-		Sama_1553	0.74	+0.9
1,890,914	-		Sama_1553	0.74	-0.7
1,891,046	+		Sama_1553	0.83	-1.6
1,891,047	-		Sama_1553	0.83	+1.5
1,891,062	+		Sama_1553	0.84	+1.3
1,891,062	+		Sama_1553	0.84	+1.6
1,891,063	-		Sama_1553	0.84	-1.8
1,891,134	+		Sama_1553	0.89	-0.8
1,891,135	-		Sama_1553	0.89	-1.2
1,891,252	+				-0.7
1,891,278	+				-1.8
1,891,345	-				-2.1
1,891,378	+				-0.3
1,891,378	+				+1.5
1,891,382	+				-1.5
1,891,394	+				+0.0
1,891,394	+				-1.0
1,891,395	-				-0.2
1,891,395	-				+1.2
1,891,395	-				+4.1
1,891,401	+				+0.6
1,891,401	+				-2.3
1,891,401	+				-1.2
1,891,402	-				-1.6
1,891,402	-				+0.3
1,891,408	+				+1.2
1,891,437	+				-0.8
1,891,484	+				-2.1
1,891,484	+				+0.5
1,891,484	+				-0.3
1,891,485	-				+0.9
1,891,485	-				+2.6
1,891,743	+		Sama_1554	0.16	+3.0
1,891,757	-		Sama_1554	0.17	-0.3
1,891,798	-		Sama_1554	0.18	-0.4
1,891,812	+		Sama_1554	0.19	-1.8
1,891,876	+		Sama_1554	0.22	+1.8
1,891,876	+		Sama_1554	0.22	+0.3
1,891,877	-		Sama_1554	0.22	+0.0
1,891,899	+		Sama_1554	0.23	+1.6
1,891,900	-		Sama_1554	0.23	-0.7
1,891,912	-		Sama_1554	0.24	+0.5
1,891,913	+		Sama_1554	0.24	-0.8
1,891,914	-		Sama_1554	0.24	-1.0
1,891,914	-		Sama_1554	0.24	-2.1
1,891,914	-		Sama_1554	0.24	-2.1
1,891,914	-		Sama_1554	0.24	-1.3
1,891,914	-		Sama_1554	0.24	-1.2
1,891,915	+		Sama_1554	0.24	+0.6
1,892,058	-		Sama_1554	0.30	-0.4
1,892,068	+		Sama_1554	0.31	+3.1
1,892,068	+		Sama_1554	0.31	+1.6
1,892,119	-		Sama_1554	0.33	-1.5
1,892,167	+		Sama_1554	0.35	+0.5
1,892,183	+		Sama_1554	0.36	+1.2
1,892,183	+		Sama_1554	0.36	-0.0
1,892,215	+		Sama_1554	0.38	-0.5
1,892,215	+		Sama_1554	0.38	+1.9
1,892,215	+		Sama_1554	0.38	+2.6
1,892,216	-		Sama_1554	0.38	-1.0
1,892,216	-		Sama_1554	0.38	+4.6
1,892,217	+		Sama_1554	0.38	+1.6
1,892,217	+		Sama_1554	0.38	-0.9
1,892,217	+		Sama_1554	0.38	-0.1
1,892,217	+		Sama_1554	0.38	-1.1
1,892,217	+		Sama_1554	0.38	-1.5
1,892,218	-		Sama_1554	0.38	-1.2
1,892,218	-		Sama_1554	0.38	+1.3
1,892,218	-		Sama_1554	0.38	-1.0