Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1404 and Sama_1405 are separated by 65 nucleotides Sama_1405 and Sama_1406 are separated by 263 nucleotides
Sama_1404: Sama_1404 - Beta-glucosidase (EC 3.2.1.21) (from data) , at 1,704,037 to 1,706,616
_1404
Sama_1405: Sama_1405 - glucokinase (EC 2.7.1.2) (from data) , at 1,706,682 to 1,707,614
_1405
Sama_1406: Sama_1406 - hypothetical protein (RefSeq), at 1,707,878 to 1,708,816
_1406
Position (kb)
1706
1707
1708 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1706.262 kb on + strand, within Sama_1404 at 1706.402 kb on + strand at 1706.403 kb on - strand at 1706.685 kb on + strand at 1706.685 kb on + strand at 1706.685 kb on + strand at 1706.686 kb on - strand at 1706.755 kb on + strand at 1706.755 kb on + strand at 1706.755 kb on + strand at 1706.755 kb on + strand at 1706.770 kb on + strand at 1706.770 kb on + strand at 1706.770 kb on + strand at 1706.771 kb on - strand at 1706.774 kb on + strand at 1706.774 kb on + strand at 1706.775 kb on - strand at 1706.788 kb on - strand, within Sama_1405 at 1706.870 kb on + strand, within Sama_1405 at 1706.870 kb on + strand, within Sama_1405 at 1706.905 kb on + strand, within Sama_1405 at 1706.905 kb on + strand, within Sama_1405 at 1706.948 kb on + strand, within Sama_1405 at 1707.056 kb on - strand, within Sama_1405 at 1707.102 kb on - strand, within Sama_1405 at 1707.102 kb on - strand, within Sama_1405 at 1707.112 kb on + strand, within Sama_1405 at 1707.112 kb on + strand, within Sama_1405 at 1707.113 kb on - strand, within Sama_1405 at 1707.113 kb on - strand, within Sama_1405 at 1707.113 kb on - strand, within Sama_1405 at 1707.113 kb on - strand, within Sama_1405 at 1707.113 kb on - strand, within Sama_1405 at 1707.185 kb on + strand, within Sama_1405 at 1707.185 kb on + strand, within Sama_1405 at 1707.186 kb on - strand, within Sama_1405 at 1707.186 kb on - strand, within Sama_1405 at 1707.357 kb on - strand, within Sama_1405 at 1707.389 kb on + strand, within Sama_1405 at 1707.415 kb on + strand, within Sama_1405 at 1707.416 kb on - strand, within Sama_1405 at 1707.453 kb on + strand, within Sama_1405 at 1707.453 kb on + strand, within Sama_1405 at 1707.453 kb on + strand, within Sama_1405 at 1707.454 kb on - strand, within Sama_1405 at 1707.459 kb on + strand, within Sama_1405 at 1707.459 kb on + strand, within Sama_1405 at 1707.460 kb on - strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.483 kb on + strand, within Sama_1405 at 1707.484 kb on - strand, within Sama_1405 at 1707.484 kb on - strand, within Sama_1405 at 1707.612 kb on + strand at 1707.612 kb on + strand at 1707.612 kb on + strand at 1707.613 kb on - strand at 1707.613 kb on - strand at 1707.613 kb on - strand at 1707.616 kb on + strand at 1707.616 kb on + strand at 1707.616 kb on + strand at 1707.616 kb on + strand at 1707.628 kb on + strand at 1707.628 kb on + strand at 1707.629 kb on - strand at 1707.638 kb on + strand at 1707.639 kb on - strand at 1707.670 kb on + strand at 1707.683 kb on + strand at 1707.684 kb on - strand at 1707.706 kb on + strand at 1707.706 kb on + strand at 1707.706 kb on + strand at 1707.706 kb on + strand at 1707.706 kb on + strand at 1707.707 kb on - strand at 1707.707 kb on - strand at 1707.714 kb on + strand at 1707.714 kb on + strand at 1707.714 kb on + strand at 1707.714 kb on + strand at 1707.714 kb on + strand at 1707.715 kb on - strand at 1707.805 kb on + strand at 1707.806 kb on - strand at 1707.936 kb on + strand at 1707.936 kb on + strand at 1707.937 kb on - strand at 1707.937 kb on - strand at 1707.937 kb on - strand at 1708.078 kb on + strand, within Sama_1406 at 1708.078 kb on + strand, within Sama_1406 at 1708.198 kb on + strand, within Sama_1406 at 1708.198 kb on + strand, within Sama_1406 at 1708.222 kb on + strand, within Sama_1406 at 1708.222 kb on + strand, within Sama_1406 at 1708.235 kb on + strand, within Sama_1406 at 1708.235 kb on + strand, within Sama_1406 at 1708.235 kb on + strand, within Sama_1406 at 1708.236 kb on - strand, within Sama_1406 at 1708.236 kb on - strand, within Sama_1406 at 1708.236 kb on - strand, within Sama_1406 at 1708.237 kb on + strand, within Sama_1406 at 1708.238 kb on - strand, within Sama_1406 at 1708.292 kb on - strand, within Sama_1406 at 1708.328 kb on + strand, within Sama_1406 at 1708.329 kb on - strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.411 kb on + strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.412 kb on - strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.413 kb on + strand, within Sama_1406 at 1708.414 kb on - strand, within Sama_1406 at 1708.414 kb on - strand, within Sama_1406 at 1708.430 kb on + strand, within Sama_1406 at 1708.576 kb on + strand, within Sama_1406 at 1708.576 kb on + strand, within Sama_1406 at 1708.576 kb on + strand, within Sama_1406 at 1708.576 kb on + strand, within Sama_1406 at 1708.576 kb on + strand, within Sama_1406 at 1708.595 kb on + strand, within Sama_1406 at 1708.595 kb on + strand, within Sama_1406 at 1708.596 kb on - strand, within Sama_1406 at 1708.596 kb on - strand, within Sama_1406 at 1708.597 kb on + strand, within Sama_1406 at 1708.598 kb on - strand, within Sama_1406
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 1,706,262 + Sama_1404 0.86 -1.2 1,706,402 + -0.7 1,706,403 - +0.4 1,706,685 + +1.1 1,706,685 + +0.1 1,706,685 + +2.9 1,706,686 - +0.8 1,706,755 + -1.6 1,706,755 + +0.8 1,706,755 + -0.9 1,706,755 + +0.6 1,706,770 + -2.1 1,706,770 + +0.3 1,706,770 + -1.2 1,706,771 - -1.4 1,706,774 + -3.7 1,706,774 + +1.5 1,706,775 - -2.1 1,706,788 - Sama_1405 0.11 -0.5 1,706,870 + Sama_1405 0.20 +0.7 1,706,870 + Sama_1405 0.20 -1.4 1,706,905 + Sama_1405 0.24 -1.9 1,706,905 + Sama_1405 0.24 -0.9 1,706,948 + Sama_1405 0.29 -0.2 1,707,056 - Sama_1405 0.40 +2.8 1,707,102 - Sama_1405 0.45 +3.6 1,707,102 - Sama_1405 0.45 -2.0 1,707,112 + Sama_1405 0.46 -0.1 1,707,112 + Sama_1405 0.46 +0.2 1,707,113 - Sama_1405 0.46 -1.6 1,707,113 - Sama_1405 0.46 +0.7 1,707,113 - Sama_1405 0.46 +0.7 1,707,113 - Sama_1405 0.46 +1.3 1,707,113 - Sama_1405 0.46 -1.2 1,707,185 + Sama_1405 0.54 -2.1 1,707,185 + Sama_1405 0.54 +3.5 1,707,186 - Sama_1405 0.54 +0.1 1,707,186 - Sama_1405 0.54 +1.4 1,707,357 - Sama_1405 0.72 -0.3 1,707,389 + Sama_1405 0.76 +0.6 1,707,415 + Sama_1405 0.79 -2.7 1,707,416 - Sama_1405 0.79 +1.6 1,707,453 + Sama_1405 0.83 -2.0 1,707,453 + Sama_1405 0.83 +0.7 1,707,453 + Sama_1405 0.83 +1.1 1,707,454 - Sama_1405 0.83 -0.1 1,707,459 + Sama_1405 0.83 +2.2 1,707,459 + Sama_1405 0.83 -1.0 1,707,460 - Sama_1405 0.83 -0.1 1,707,483 + Sama_1405 0.86 +1.1 1,707,483 + Sama_1405 0.86 -0.6 1,707,483 + Sama_1405 0.86 -2.4 1,707,483 + Sama_1405 0.86 +5.0 1,707,483 + Sama_1405 0.86 +0.7 1,707,483 + Sama_1405 0.86 -1.4 1,707,483 + Sama_1405 0.86 +1.7 1,707,483 + Sama_1405 0.86 -0.5 1,707,484 - Sama_1405 0.86 +2.3 1,707,484 - Sama_1405 0.86 +2.2 1,707,612 + +1.5 1,707,612 + +1.8 1,707,612 + -0.7 1,707,613 - -0.2 1,707,613 - +1.4 1,707,613 - -0.4 1,707,616 + +0.3 1,707,616 + -1.6 1,707,616 + -0.6 1,707,616 + +3.1 1,707,628 + +2.8 1,707,628 + -1.6 1,707,629 - +1.7 1,707,638 + +3.1 1,707,639 - +0.0 1,707,670 + +0.1 1,707,683 + -0.0 1,707,684 - +0.7 1,707,706 + -1.0 1,707,706 + +1.5 1,707,706 + -1.9 1,707,706 + +1.2 1,707,706 + +0.1 1,707,707 - +0.1 1,707,707 - +4.2 1,707,714 + -0.9 1,707,714 + +2.3 1,707,714 + +0.1 1,707,714 + +0.1 1,707,714 + -0.3 1,707,715 - +4.5 1,707,805 + -1.3 1,707,806 - -0.0 1,707,936 + +0.6 1,707,936 + -2.2 1,707,937 - -1.3 1,707,937 - -1.0 1,707,937 - -1.1 1,708,078 + Sama_1406 0.21 -1.0 1,708,078 + Sama_1406 0.21 -0.4 1,708,198 + Sama_1406 0.34 -0.6 1,708,198 + Sama_1406 0.34 -1.1 1,708,222 + Sama_1406 0.37 -0.3 1,708,222 + Sama_1406 0.37 -0.9 1,708,235 + Sama_1406 0.38 -2.1 1,708,235 + Sama_1406 0.38 +0.2 1,708,235 + Sama_1406 0.38 -1.1 1,708,236 - Sama_1406 0.38 -0.8 1,708,236 - Sama_1406 0.38 -0.3 1,708,236 - Sama_1406 0.38 -0.4 1,708,237 + Sama_1406 0.38 -0.2 1,708,238 - Sama_1406 0.38 +1.2 1,708,292 - Sama_1406 0.44 -0.9 1,708,328 + Sama_1406 0.48 -0.6 1,708,329 - Sama_1406 0.48 -1.0 1,708,411 + Sama_1406 0.57 -1.6 1,708,411 + Sama_1406 0.57 -1.8 1,708,411 + Sama_1406 0.57 -0.2 1,708,411 + Sama_1406 0.57 -1.1 1,708,411 + Sama_1406 0.57 -2.3 1,708,411 + Sama_1406 0.57 +3.8 1,708,412 - Sama_1406 0.57 +3.2 1,708,412 - Sama_1406 0.57 -1.6 1,708,412 - Sama_1406 0.57 +1.6 1,708,412 - Sama_1406 0.57 -1.6 1,708,412 - Sama_1406 0.57 -0.3 1,708,412 - Sama_1406 0.57 -1.7 1,708,412 - Sama_1406 0.57 -1.0 1,708,412 - Sama_1406 0.57 +0.6 1,708,413 + Sama_1406 0.57 -2.4 1,708,413 + Sama_1406 0.57 +0.4 1,708,413 + Sama_1406 0.57 -2.3 1,708,413 + Sama_1406 0.57 +2.8 1,708,413 + Sama_1406 0.57 -2.0 1,708,413 + Sama_1406 0.57 -0.8 1,708,414 - Sama_1406 0.57 +0.3 1,708,414 - Sama_1406 0.57 -1.8 1,708,430 + Sama_1406 0.59 -0.3 1,708,576 + Sama_1406 0.74 -1.3 1,708,576 + Sama_1406 0.74 +0.2 1,708,576 + Sama_1406 0.74 -1.8 1,708,576 + Sama_1406 0.74 -0.3 1,708,576 + Sama_1406 0.74 -0.5 1,708,595 + Sama_1406 0.76 -0.5 1,708,595 + Sama_1406 0.76 -0.3 1,708,596 - Sama_1406 0.76 +0.2 1,708,596 - Sama_1406 0.76 -1.1 1,708,597 + Sama_1406 0.77 +0.3 1,708,598 - Sama_1406 0.77 -1.0
Or see this region's nucleotide sequence