Strain Fitness in Shewanella amazonensis SB2B around Sama_1031

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
1,244,710	+				-2.9
1,244,711	-				-1.7
1,244,711	-				-1.5
1,244,711	-				-1.6
1,244,711	-				-2.4
1,244,711	-				-1.6
1,244,729	+				-0.4
1,244,730	-				-2.6
1,244,756	+				-0.1
1,244,756	+				-0.8
1,244,756	+				+1.5
1,244,756	+				+1.3
1,244,756	+				+1.6
1,244,936	+		Sama_1029	0.69	-1.0
1,244,982	-		Sama_1029	0.88	-1.4
1,244,983	+		Sama_1029	0.88	+3.6
1,244,984	-		Sama_1029	0.89	+0.8
1,244,984	-		Sama_1029	0.89	-0.9
1,244,994	+				-1.4
1,244,995	-				+0.4
1,244,995	-				-1.4
1,244,999	+				-0.4
1,245,000	-				-1.6
1,245,016	-				-0.3
1,245,016	-				+0.7
1,245,016	-				-1.9
1,245,059	+				+0.4
1,245,059	+				+1.3
1,245,105	-		Sama_1030	0.12	+0.1
1,245,105	-		Sama_1030	0.12	+4.8
1,245,148	-		Sama_1030	0.19	+1.6
1,245,239	+		Sama_1030	0.34	-1.9
1,245,249	-		Sama_1030	0.36	-1.0
1,245,250	+		Sama_1030	0.36	-0.1
1,245,250	+		Sama_1030	0.36	+1.4
1,245,250	+		Sama_1030	0.36	-1.4
1,245,250	+		Sama_1030	0.36	-0.7
1,245,251	-		Sama_1030	0.36	-0.6
1,245,251	-		Sama_1030	0.36	-1.6
1,245,251	-		Sama_1030	0.36	-2.5
1,245,251	-		Sama_1030	0.36	+1.6
1,245,251	-		Sama_1030	0.36	-1.6
1,245,251	-		Sama_1030	0.36	-2.5
1,245,251	-		Sama_1030	0.36	+1.3
1,245,251	-		Sama_1030	0.36	-1.0
1,245,251	-		Sama_1030	0.36	-1.1
1,245,251	-		Sama_1030	0.36	-2.0
1,245,251	-		Sama_1030	0.36	-0.8
1,245,251	-		Sama_1030	0.36	-0.3
1,245,251	-		Sama_1030	0.36	-1.3
1,245,263	+		Sama_1030	0.38	-1.0
1,245,263	+		Sama_1030	0.38	-1.8
1,245,264	-		Sama_1030	0.38	+4.1
1,245,278	+		Sama_1030	0.40	+0.9
1,245,279	-		Sama_1030	0.41	+0.9
1,245,279	-		Sama_1030	0.41	-1.9
1,245,279	-		Sama_1030	0.41	-1.2
1,245,284	+		Sama_1030	0.41	+0.1
1,245,285	-		Sama_1030	0.42	-1.4
1,245,303	+		Sama_1030	0.45	-0.8
1,245,304	-		Sama_1030	0.45	-2.0
1,245,334	-		Sama_1030	0.50	+1.1
1,245,334	-		Sama_1030	0.50	+0.2
1,245,367	-		Sama_1030	0.55	+0.6
1,245,367	-		Sama_1030	0.55	-0.3
1,245,374	-		Sama_1030	0.56	-1.2
1,245,483	+		Sama_1030	0.74	-2.4
1,245,483	+		Sama_1030	0.74	+1.7
1,245,484	-		Sama_1030	0.74	+4.2
1,245,484	-		Sama_1030	0.74	-0.9
1,245,484	-		Sama_1030	0.74	-1.4
1,245,484	-		Sama_1030	0.74	-1.1
1,245,538	+		Sama_1030	0.83	+1.6
1,245,539	-		Sama_1030	0.83	+0.6
1,245,547	+		Sama_1030	0.85	-0.2
1,245,547	+		Sama_1030	0.85	-1.1
1,245,547	+		Sama_1030	0.85	-0.3
1,245,548	-		Sama_1030	0.85	-2.1
1,245,576	+		Sama_1030	0.90	+0.9
1,245,577	-		Sama_1030	0.90	-2.2
1,245,577	-		Sama_1030	0.90	-1.6
1,245,644	-				-0.4
1,245,688	+				+1.4
1,245,688	+				+1.1
1,245,688	+				-1.2
1,245,689	-				-3.0
1,245,689	-				+0.6
1,245,693	+				+0.2
1,245,694	-				-0.5
1,245,709	+				+2.6
1,245,709	+				+0.4
1,245,709	+				+3.0
1,245,709	+				+0.9
1,245,709	+				+2.4
1,245,709	+				+0.6
1,245,709	+				+2.0
1,245,710	-				-0.0
1,245,710	-				+2.1
1,245,809	+				+2.6
1,245,809	+				+3.3
1,245,810	-				-0.0
1,245,840	+				+2.5
1,245,840	+				+4.9
1,245,841	-				+0.9
1,245,841	-				-1.4
1,245,842	+				+2.2
1,245,842	+				+1.7
1,245,842	+				-0.2
1,245,843	-				+4.2
1,245,843	-				+1.6
1,245,849	+				+2.3
1,245,849	+				+2.8
1,245,850	-				+4.2
1,245,850	-				+1.5
1,245,850	-				+3.7
1,245,850	-				+2.9
1,245,850	-				+1.7
1,245,850	-				+2.1
1,245,850	-				+4.4
1,245,925	+		Sama_1031	0.11	+2.1
1,245,925	+		Sama_1031	0.11	+1.6
1,245,925	+		Sama_1031	0.11	+5.1
1,245,926	-		Sama_1031	0.11	+0.3
1,245,957	+		Sama_1031	0.12	-1.0
1,245,957	+		Sama_1031	0.12	+3.5
1,246,047	+		Sama_1031	0.15	+2.5
1,246,047	+		Sama_1031	0.15	-0.1
1,246,079	+		Sama_1031	0.16	+1.4
1,246,080	-		Sama_1031	0.16	+2.3
1,246,102	+		Sama_1031	0.17	+2.2
1,246,103	-		Sama_1031	0.17	+2.3
1,246,104	+		Sama_1031	0.17	+2.3
1,246,104	+		Sama_1031	0.17	-0.2
1,246,104	+		Sama_1031	0.17	+3.3
1,246,104	+		Sama_1031	0.17	+2.5
1,246,104	+		Sama_1031	0.17	+1.2
1,246,104	+		Sama_1031	0.17	+3.3
1,246,105	-		Sama_1031	0.17	+3.3
1,246,105	-		Sama_1031	0.17	+4.9
1,246,105	-		Sama_1031	0.17	-0.4
1,246,105	-		Sama_1031	0.17	+2.6
1,246,105	-		Sama_1031	0.17	+2.2
1,246,105	-		Sama_1031	0.17	+3.3
1,246,105	-		Sama_1031	0.17	+4.5
1,246,146	+		Sama_1031	0.18	+3.4
1,246,147	-		Sama_1031	0.18	+3.2
1,246,147	-		Sama_1031	0.18	+1.1
1,246,230	+		Sama_1031	0.21	+1.3
1,246,230	+		Sama_1031	0.21	+2.4
1,246,332	+		Sama_1031	0.25	+2.7
1,246,333	-		Sama_1031	0.25	+1.9
1,246,354	-		Sama_1031	0.26	+2.3
1,246,447	+		Sama_1031	0.29	+2.1
1,246,447	+		Sama_1031	0.29	+4.4
1,246,448	-		Sama_1031	0.29	+2.1
1,246,526	+		Sama_1031	0.32	+3.2
1,246,526	+		Sama_1031	0.32	-1.1
1,246,526	+		Sama_1031	0.32	+2.3
1,246,526	+		Sama_1031	0.32	+3.1
1,246,526	+		Sama_1031	0.32	+0.1
1,246,526	+		Sama_1031	0.32	+2.5
1,246,526	+		Sama_1031	0.32	+2.0
1,246,526	+		Sama_1031	0.32	+1.9
1,246,526	+		Sama_1031	0.32	+1.8
1,246,527	-		Sama_1031	0.32	+0.9
1,246,527	-		Sama_1031	0.32	+2.3
1,246,527	-		Sama_1031	0.32	+1.9
1,246,527	-		Sama_1031	0.32	+1.8
1,246,527	-		Sama_1031	0.32	+3.1
1,246,527	-		Sama_1031	0.32	-0.0
1,246,527	-		Sama_1031	0.32	+1.6
1,246,527	-		Sama_1031	0.32	-0.3
1,246,572	+		Sama_1031	0.33	-2.2
1,246,572	+		Sama_1031	0.33	+0.8
1,246,572	+		Sama_1031	0.33	+3.2
1,246,573	-		Sama_1031	0.33	+1.5
1,246,573	-		Sama_1031	0.33	+0.1
1,246,573	-		Sama_1031	0.33	+2.6
1,246,603	+		Sama_1031	0.35	+3.7
1,246,603	+		Sama_1031	0.35	+3.7
1,246,603	+		Sama_1031	0.35	+2.7
1,246,604	-		Sama_1031	0.35	+2.3
1,246,604	-		Sama_1031	0.35	+2.2
1,246,637	-		Sama_1031	0.36	+1.7
1,246,652	+		Sama_1031	0.36	+1.2
1,246,652	+		Sama_1031	0.36	+1.6
1,246,731	+		Sama_1031	0.39	+4.4
1,246,732	-		Sama_1031	0.39	+6.3
1,246,894	+		Sama_1031	0.45	+1.2
1,246,894	+		Sama_1031	0.45	+3.3
1,246,895	-		Sama_1031	0.45	+3.1
1,246,895	-		Sama_1031	0.45	+1.4
1,246,919	-		Sama_1031	0.46	+0.1
1,246,936	-		Sama_1031	0.46	+1.5
1,247,035	+		Sama_1031	0.50	-0.6
1,247,035	+		Sama_1031	0.50	+0.3
1,247,035	+		Sama_1031	0.50	+2.2
1,247,036	-		Sama_1031	0.50	+3.1
1,247,036	-		Sama_1031	0.50	+2.4
1,247,036	-		Sama_1031	0.50	+1.5
1,247,036	-		Sama_1031	0.50	+2.3
1,247,036	-		Sama_1031	0.50	-1.1
1,247,036	-		Sama_1031	0.50	+4.0
1,247,036	-		Sama_1031	0.50	+2.0
1,247,036	-		Sama_1031	0.50	+2.0
1,247,036	-		Sama_1031	0.50	-1.1
1,247,127	+		Sama_1031	0.53	+2.9
1,247,365	+		Sama_1031	0.61	+1.9
1,247,366	-		Sama_1031	0.62	+1.6
1,247,408	+		Sama_1031	0.63	+2.2
1,247,408	+		Sama_1031	0.63	+3.0
1,247,408	+		Sama_1031	0.63	+1.9
1,247,409	-		Sama_1031	0.63	+1.9
1,247,409	-		Sama_1031	0.63	+0.0
1,247,409	-		Sama_1031	0.63	+4.6
1,247,409	-		Sama_1031	0.63	+1.6
1,247,409	-		Sama_1031	0.63	+1.0
1,247,566	+		Sama_1031	0.69	+0.0
1,247,566	+		Sama_1031	0.69	+2.5
1,247,567	-		Sama_1031	0.69	+2.0
1,247,567	-		Sama_1031	0.69	+3.2
1,247,567	-		Sama_1031	0.69	+2.3
1,247,567	-		Sama_1031	0.69	+4.1
1,247,567	-		Sama_1031	0.69	+1.6
1,247,575	+		Sama_1031	0.69	+0.9
1,247,575	+		Sama_1031	0.69	+1.5
1,247,576	-		Sama_1031	0.69	+0.9
1,247,576	-		Sama_1031	0.69	+3.5
1,247,648	+		Sama_1031	0.71	+2.8
1,247,680	-		Sama_1031	0.73	+2.9
1,247,814	+		Sama_1031	0.77	+3.3
1,247,814	+		Sama_1031	0.77	+4.2
1,247,814	+		Sama_1031	0.77	+1.7
1,247,828	-		Sama_1031	0.78	+5.2
1,247,850	+		Sama_1031	0.79	+1.7
1,247,853	+		Sama_1031	0.79	+5.1
1,247,853	+		Sama_1031	0.79	+4.1
1,247,853	+		Sama_1031	0.79	+3.0
1,247,853	+		Sama_1031	0.79	+1.0
1,247,854	-		Sama_1031	0.79	+2.0
1,247,922	-		Sama_1031	0.81	+2.9
1,248,105	+		Sama_1031	0.88	+1.7
1,248,105	+		Sama_1031	0.88	+4.1
1,248,105	+		Sama_1031	0.88	+4.4
1,248,105	+		Sama_1031	0.88	+5.2
1,248,105	+		Sama_1031	0.88	+2.8
1,248,105	+		Sama_1031	0.88	+4.7
1,248,105	+		Sama_1031	0.88	+2.1
1,248,105	+		Sama_1031	0.88	+3.1
1,248,106	-		Sama_1031	0.88	+4.0
1,248,106	-		Sama_1031	0.88	+2.2
1,248,106	-		Sama_1031	0.88	+1.5
1,248,106	-		Sama_1031	0.88	+2.0
1,248,106	-		Sama_1031	0.88	+1.0
1,248,106	-		Sama_1031	0.88	-0.6
1,248,106	-		Sama_1031	0.88	+1.6
1,248,106	-		Sama_1031	0.88	+3.0
1,248,106	-		Sama_1031	0.88	+3.4
1,248,106	-		Sama_1031	0.88	+2.6
1,248,106	-		Sama_1031	0.88	+2.5
1,248,106	-		Sama_1031	0.88	-1.2
1,248,106	-		Sama_1031	0.88	+2.8
1,248,107	+		Sama_1031	0.88	+3.4
1,248,107	+		Sama_1031	0.88	+3.1
1,248,107	+		Sama_1031	0.88	+4.0
1,248,107	+		Sama_1031	0.88	+3.3
1,248,108	-		Sama_1031	0.88	+5.5
1,248,108	-		Sama_1031	0.88	+2.3
1,248,134	+		Sama_1031	0.89	+2.8
1,248,135	-		Sama_1031	0.89	+3.7
1,248,151	+		Sama_1031	0.89	+4.0
1,248,152	-		Sama_1031	0.89	+4.3
1,248,152	-		Sama_1031	0.89	+5.1
1,248,162	+		Sama_1031	0.90	+4.4
1,248,162	+		Sama_1031	0.90	+4.2
1,248,163	-		Sama_1031	0.90	+3.5
1,248,163	-		Sama_1031	0.90	+1.4
1,248,163	-		Sama_1031	0.90	+1.2
1,248,289	+				+2.9
1,248,289	+				+4.3
1,248,289	+				+3.3
1,248,289	+				+4.8
1,248,289	+				+2.9
1,248,289	+				-0.2
1,248,289	+				+2.5
1,248,289	+				+1.2
1,248,289	+				+3.2
1,248,289	+				+5.1
1,248,290	-				+3.1
1,248,290	-				+0.5
1,248,290	-				-0.4
1,248,290	-				+2.2
1,248,290	-				+5.1
1,248,290	-				+2.4
1,248,290	-				+3.2
1,248,290	-				+0.6
1,248,290	-				+6.0
1,248,290	-				+4.4
1,248,297	+				+3.1
1,248,297	+				+2.5
1,248,297	+				-0.2
1,248,297	+				+3.3
1,248,298	-				+0.5
1,248,307	-				+2.4
1,248,307	-				+1.6
1,248,332	+				+4.3
1,248,332	+				+3.4
1,248,332	+				+2.6
1,248,332	+				+3.1
1,248,332	+				+3.5
1,248,332	+				+6.6
1,248,333	-				+2.9
1,248,333	-				+2.0
1,248,333	-				+0.8
1,248,333	-				+1.8
1,248,333	-				+3.0
1,248,333	-				+1.9
1,248,333	-				+1.2
1,248,344	-				-1.0
1,248,344	-				+1.0
1,248,348	+				+3.7
1,248,349	-				+2.4
1,248,349	-				+4.1
1,248,349	-				-1.0
1,248,349	-				+4.1
1,248,353	+				+4.2
1,248,353	+				+5.3
1,248,353	+				+2.6
1,248,353	+				+2.7
1,248,353	+				+3.3
1,248,353	+				+2.5
1,248,353	+				+3.0
1,248,354	-				+1.8
1,248,354	-				+0.5
1,248,407	-				+1.1
1,248,425	+				+3.3
1,248,425	+				+4.6
1,248,426	-				+0.7
1,248,426	-				+0.1
1,248,435	+				+3.7
1,248,436	-				-0.4
1,248,491	+				+2.3
1,248,492	-				-2.3
1,248,492	-				-0.9
1,248,494	+				+2.8
1,248,494	+				+4.6
1,248,494	+				-0.1
1,248,494	+				+4.4
1,248,494	+				+4.3
1,248,494	+				+2.6
1,248,494	+				+4.7
1,248,494	+				+4.1
1,248,494	+				+4.8
1,248,494	+				+6.2
1,248,495	-				-1.7
1,248,495	-				+0.1
1,248,495	-				-1.7
1,248,495	-				-0.9
1,248,495	-				-0.8
1,248,536	+				+0.6
1,248,536	+				+1.2
1,248,536	+				+0.7
1,248,537	-				-2.2
1,248,537	-				-2.4
1,248,673	+				+1.9
1,248,674	-				-0.2
1,248,734	+	rumA	Sama_1032	0.14	-0.3
1,248,734	+	rumA	Sama_1032	0.14	+2.9
1,248,734	+	rumA	Sama_1032	0.14	+0.1
1,248,803	+	rumA	Sama_1032	0.19	+1.5
1,248,828	+	rumA	Sama_1032	0.21	+3.1
1,248,829	-	rumA	Sama_1032	0.21	-0.9
1,248,860	+	rumA	Sama_1032	0.23	+1.7
1,248,860	+	rumA	Sama_1032	0.23	+2.6
1,248,860	+	rumA	Sama_1032	0.23	+1.7
1,248,860	+	rumA	Sama_1032	0.23	-2.2
1,248,861	-	rumA	Sama_1032	0.23	-2.0
1,248,861	-	rumA	Sama_1032	0.23	-3.4
1,248,861	-	rumA	Sama_1032	0.23	+0.6
1,248,861	-	rumA	Sama_1032	0.23	-1.0
1,248,861	-	rumA	Sama_1032	0.23	-2.1
1,248,861	-	rumA	Sama_1032	0.23	-2.0
1,248,883	+	rumA	Sama_1032	0.25	-1.3
1,248,883	+	rumA	Sama_1032	0.25	+1.0
1,248,884	-	rumA	Sama_1032	0.25	+1.6
1,248,922	+	rumA	Sama_1032	0.28	-0.2
1,248,933	+	rumA	Sama_1032	0.29	+1.6
1,248,933	+	rumA	Sama_1032	0.29	-0.3
1,248,933	+	rumA	Sama_1032	0.29	-2.0
1,248,933	+	rumA	Sama_1032	0.29	+0.6
1,248,934	-	rumA	Sama_1032	0.29	-0.2
1,248,934	-	rumA	Sama_1032	0.29	-1.4
1,248,934	-	rumA	Sama_1032	0.29	-1.7
1,248,953	+	rumA	Sama_1032	0.30	+1.1
1,248,972	+	rumA	Sama_1032	0.32	+1.3
1,248,972	+	rumA	Sama_1032	0.32	-2.0
1,248,973	-	rumA	Sama_1032	0.32	-1.4
1,248,988	+	rumA	Sama_1032	0.33	+3.1
1,249,090	+	rumA	Sama_1032	0.41	-0.3
1,249,090	+	rumA	Sama_1032	0.41	-1.8
1,249,090	+	rumA	Sama_1032	0.41	-1.8
1,249,091	-	rumA	Sama_1032	0.41	-0.9
1,249,115	-	rumA	Sama_1032	0.43	+1.4
1,249,149	+	rumA	Sama_1032	0.45	+1.1
1,249,150	-	rumA	Sama_1032	0.45	-0.4
1,249,150	-	rumA	Sama_1032	0.45	-1.7
1,249,322	+	rumA	Sama_1032	0.58	+1.2
1,249,322	+	rumA	Sama_1032	0.58	+0.6
1,249,322	+	rumA	Sama_1032	0.58	-2.0
1,249,326	-	rumA	Sama_1032	0.58	-1.4
1,249,326	-	rumA	Sama_1032	0.58	-2.2
1,249,326	-	rumA	Sama_1032	0.58	-0.8