Strain Fitness in Shewanella amazonensis SB2B around Sama_0996

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
1,207,651	+		Sama_0995	0.57	-1.4
1,207,651	+		Sama_0995	0.57	+2.8
1,207,652	-		Sama_0995	0.57	-2.0
1,207,665	+		Sama_0995	0.58	+1.9
1,207,666	-		Sama_0995	0.58	-0.1
1,207,674	+		Sama_0995	0.59	-2.3
1,207,796	+		Sama_0995	0.66	-0.5
1,207,823	+		Sama_0995	0.68	-0.5
1,207,823	+		Sama_0995	0.68	-0.9
1,207,823	+		Sama_0995	0.68	+1.8
1,207,823	+		Sama_0995	0.68	+0.1
1,207,823	+		Sama_0995	0.68	-0.8
1,207,823	+		Sama_0995	0.68	-1.9
1,207,823	+		Sama_0995	0.68	+1.1
1,207,823	+		Sama_0995	0.68	-2.2
1,207,823	+		Sama_0995	0.68	-0.3
1,207,823	+		Sama_0995	0.68	-0.3
1,207,823	+		Sama_0995	0.68	+0.6
1,207,824	-		Sama_0995	0.68	-1.4
1,207,824	-		Sama_0995	0.68	+3.4
1,207,824	-		Sama_0995	0.68	+1.6
1,207,824	-		Sama_0995	0.68	-1.6
1,207,824	-		Sama_0995	0.68	-1.1
1,207,824	-		Sama_0995	0.68	+1.8
1,207,824	-		Sama_0995	0.68	+0.4
1,207,824	-		Sama_0995	0.68	-0.3
1,207,824	-		Sama_0995	0.68	+0.4
1,207,824	-		Sama_0995	0.68	+2.3
1,207,824	-		Sama_0995	0.68	+1.2
1,207,824	-		Sama_0995	0.68	+1.5
1,207,824	-		Sama_0995	0.68	-0.1
1,207,824	-		Sama_0995	0.68	-1.7
1,207,824	-		Sama_0995	0.68	-0.4
1,207,824	-		Sama_0995	0.68	-2.5
1,207,824	-		Sama_0995	0.68	+0.0
1,207,824	-		Sama_0995	0.68	+1.0
1,207,824	-		Sama_0995	0.68	+3.2
1,207,825	+		Sama_0995	0.68	-2.6
1,207,825	+		Sama_0995	0.68	-1.5
1,207,825	+		Sama_0995	0.68	+1.3
1,207,825	+		Sama_0995	0.68	+4.1
1,207,825	+		Sama_0995	0.68	-0.0
1,207,825	+		Sama_0995	0.68	+0.3
1,207,825	+		Sama_0995	0.68	-0.7
1,207,825	+		Sama_0995	0.68	+2.9
1,207,825	+		Sama_0995	0.68	-0.7
1,207,825	+		Sama_0995	0.68	-0.2
1,207,825	+		Sama_0995	0.68	-1.4
1,207,825	+		Sama_0995	0.68	-2.5
1,207,825	+		Sama_0995	0.68	-1.5
1,207,826	-		Sama_0995	0.68	-0.0
1,207,826	-		Sama_0995	0.68	+0.1
1,207,826	-		Sama_0995	0.68	+0.3
1,207,826	-		Sama_0995	0.68	-0.3
1,207,826	-		Sama_0995	0.68	+0.6
1,207,826	-		Sama_0995	0.68	+0.3
1,207,826	-		Sama_0995	0.68	-1.3
1,207,826	-		Sama_0995	0.68	-3.0
1,207,829	+		Sama_0995	0.69	+0.3
1,207,829	+		Sama_0995	0.69	-2.1
1,207,829	+		Sama_0995	0.69	+2.8
1,207,829	+		Sama_0995	0.69	-1.3
1,207,830	-		Sama_0995	0.69	-1.8
1,207,830	-		Sama_0995	0.69	+2.4
1,207,830	-		Sama_0995	0.69	-2.5
1,207,830	-		Sama_0995	0.69	-3.1
1,207,858	+		Sama_0995	0.70	+0.6
1,207,858	+		Sama_0995	0.70	+0.8
1,207,859	-		Sama_0995	0.70	-1.3
1,207,920	+		Sama_0995	0.74	+1.1
1,207,920	+		Sama_0995	0.74	+3.3
1,207,920	+		Sama_0995	0.74	-1.6
1,207,924	+		Sama_0995	0.75	-2.6
1,207,924	+		Sama_0995	0.75	+0.7
1,207,925	-		Sama_0995	0.75	+3.4
1,207,925	-		Sama_0995	0.75	+3.7
1,208,031	+		Sama_0995	0.82	+0.4
1,208,032	-		Sama_0995	0.82	+0.1
1,208,146	+		Sama_0995	0.89	+4.1
1,208,146	+		Sama_0995	0.89	-1.4
1,208,147	-		Sama_0995	0.89	-2.0
1,208,147	-		Sama_0995	0.89	-0.8
1,208,147	-		Sama_0995	0.89	+2.1
1,208,147	-		Sama_0995	0.89	-0.3
1,208,147	-		Sama_0995	0.89	-0.7
1,208,179	+				-1.2
1,208,179	+				-0.6
1,208,179	+				-1.8
1,208,179	+				+0.8
1,208,179	+				+1.8
1,208,180	-				-1.0
1,208,180	-				-1.1
1,208,180	-				+0.9
1,208,181	+				-1.2
1,208,189	+				-1.5
1,208,189	+				+0.3
1,208,189	+				-0.4
1,208,190	-				-1.6
1,208,197	+				+3.9
1,208,214	+				-1.4
1,208,214	+				-1.7
1,208,215	-				-1.6
1,208,215	-				-1.8
1,208,215	-				-0.4
1,208,215	-				+1.4
1,208,215	-				+0.9
1,208,290	+				-2.0
1,208,291	-				-2.4
1,208,317	+				-0.2
1,208,317	+				+2.3
1,208,317	+				+3.6
1,208,317	+				-1.8
1,208,318	-				-0.9
1,208,318	-				+0.0
1,208,321	+				+2.9
1,208,321	+				+1.7
1,208,321	+				-1.4
1,208,322	-				-0.7
1,208,343	+				-2.4
1,208,343	+				+0.1
1,208,344	-				-2.9
1,208,346	+				+0.9
1,208,346	+				+0.6
1,208,347	-				+0.0
1,208,372	+				+3.3
1,208,372	+				-1.5
1,208,372	+				-1.3
1,208,373	-				-1.3
1,208,382	+				+0.7
1,208,405	+				-1.0
1,208,415	+				+2.1
1,208,419	+				-1.2
1,208,425	+				+0.1
1,208,425	+				-0.0
1,208,425	+				-1.4
1,208,426	-				+0.0
1,208,426	-				+1.3
1,208,426	-				-1.1
1,208,426	-				+0.4
1,208,429	-				-0.5
1,208,439	+				+0.1
1,208,449	+				-0.3
1,208,449	+				+2.5
1,208,449	+				+0.5
1,208,449	+				-0.8
1,208,449	+				+0.0
1,208,449	+				-1.7
1,208,449	+				-1.6
1,208,449	+				+0.2
1,208,450	-				-0.1
1,208,450	-				+1.4
1,208,450	-				-1.6
1,208,484	+				+1.3
1,208,502	+				-1.4
1,208,503	-				-0.0
1,208,503	-				-1.5
1,208,503	-				-2.6
1,208,506	-				-0.1
1,208,513	-				+0.6
1,208,518	+				-0.9
1,208,518	+				-2.4
1,208,518	+				+2.8
1,208,524	+				+0.1
1,208,524	+				-0.5
1,208,525	-				-1.0
1,208,566	+				-1.2
1,208,567	-				-0.2
1,208,580	+				-2.8
1,208,580	+				-1.1
1,208,587	-				+0.3
1,208,591	+				+1.6
1,208,591	+				-0.2
1,208,591	+				+0.9
1,208,610	-				-0.4
1,208,610	-				-1.5
1,208,691	-				+0.4
1,208,725	-		Sama_0996	0.13	-0.4
1,208,725	-		Sama_0996	0.13	-2.0
1,208,782	-		Sama_0996	0.21	-0.1
1,208,830	-		Sama_0996	0.28	+1.1
1,208,833	+		Sama_0996	0.28	-1.0
1,208,833	+		Sama_0996	0.28	+3.5
1,208,833	+		Sama_0996	0.28	+1.0
1,208,834	-		Sama_0996	0.28	-0.7
1,208,834	-		Sama_0996	0.28	-1.3
1,208,834	-		Sama_0996	0.28	-1.4
1,208,834	-		Sama_0996	0.28	-0.6
1,208,834	-		Sama_0996	0.28	-0.3
1,208,834	-		Sama_0996	0.28	-1.9
1,208,834	-		Sama_0996	0.28	+1.3
1,208,834	-		Sama_0996	0.28	-1.2
1,208,889	-		Sama_0996	0.36	-0.9
1,208,922	+		Sama_0996	0.41	-1.0
1,208,923	-		Sama_0996	0.41	+1.3
1,208,923	-		Sama_0996	0.41	-0.7
1,208,948	+		Sama_0996	0.44	-0.8
1,208,949	-		Sama_0996	0.45	+2.3
1,208,949	-		Sama_0996	0.45	+0.0
1,209,013	+		Sama_0996	0.54	-0.8
1,209,013	+		Sama_0996	0.54	-0.7
1,209,013	+		Sama_0996	0.54	-0.7
1,209,014	-		Sama_0996	0.54	-1.4
1,209,076	+		Sama_0996	0.63	-2.8
1,209,076	+		Sama_0996	0.63	+1.5
1,209,076	+		Sama_0996	0.63	-1.5
1,209,085	+		Sama_0996	0.64	-0.3
1,209,085	+		Sama_0996	0.64	-0.5
1,209,085	+		Sama_0996	0.64	-0.4
1,209,086	-		Sama_0996	0.64	-2.1
1,209,220	+		Sama_0996	0.83	-0.4
1,209,220	+		Sama_0996	0.83	-1.0
1,209,221	-		Sama_0996	0.83	-1.0
1,209,221	-		Sama_0996	0.83	-2.4
1,209,221	-		Sama_0996	0.83	+1.7
1,209,221	-		Sama_0996	0.83	-2.3
1,209,232	+		Sama_0996	0.85	+1.1
1,209,241	+		Sama_0996	0.86	-1.0
1,209,284	+				-0.7
1,209,284	+				-0.9
1,209,337	+				-0.7
1,209,337	+				+0.4
1,209,338	-				+4.1
1,209,338	-				-0.7
1,209,338	-				+0.5
1,209,361	-				+0.4
1,209,367	+				-1.9
1,209,367	+				-1.1
1,209,367	+				+0.8
1,209,368	-				+1.0
1,209,368	-				-1.8
1,209,368	-				+0.3
1,209,368	-				+1.5
1,209,368	-				+1.0
1,209,368	-				-0.5
1,209,368	-				+2.4
1,209,463	+		Sama_0997	0.17	+0.8
1,209,463	+		Sama_0997	0.17	-1.1
1,209,464	-		Sama_0997	0.17	+4.5
1,209,464	-		Sama_0997	0.17	-0.4
1,209,464	-		Sama_0997	0.17	-1.9
1,209,464	-		Sama_0997	0.17	-0.1
1,209,464	-		Sama_0997	0.17	+0.6
1,209,587	+		Sama_0997	0.32	-0.5
1,209,588	-		Sama_0997	0.32	-0.3
1,209,588	-		Sama_0997	0.32	+0.2
1,209,588	-		Sama_0997	0.32	+1.0
1,209,588	-		Sama_0997	0.32	-0.2
1,209,629	-		Sama_0997	0.37	+0.6
1,209,656	+		Sama_0997	0.40	-1.4
1,209,656	+		Sama_0997	0.40	+0.1
1,209,656	+		Sama_0997	0.40	-2.5
1,209,657	-		Sama_0997	0.40	-1.4
1,209,680	+		Sama_0997	0.43	-2.0
1,209,804	+		Sama_0997	0.57	-0.7
1,209,804	+		Sama_0997	0.57	+1.7
1,209,804	+		Sama_0997	0.57	+0.2
1,209,805	-		Sama_0997	0.58	+2.5
1,209,805	-		Sama_0997	0.58	+0.7
1,209,860	+		Sama_0997	0.64	-0.1
1,209,861	-		Sama_0997	0.64	-1.8
1,209,861	-		Sama_0997	0.64	-0.5
1,209,917	-		Sama_0997	0.71	-1.6
1,210,011	+		Sama_0997	0.82	+4.9
1,210,047	-		Sama_0997	0.86	-0.7
1,210,062	+		Sama_0997	0.88	+4.3
1,210,063	-		Sama_0997	0.88	-1.6
1,210,063	-		Sama_0997	0.88	-0.4
1,210,063	-		Sama_0997	0.88	-1.3
1,210,088	+				-1.9
1,210,089	-				-0.7
1,210,089	-				-1.5
1,210,131	+				-0.7
1,210,132	-				-0.5
1,210,132	-				-1.6
1,210,132	-				-2.4
1,210,159	+				+0.9
1,210,160	-				-0.8
1,210,160	-				-1.6
1,210,173	-				-2.0
1,210,191	-				+0.7
1,210,191	-				-1.2
1,210,191	-				+0.8
1,210,191	-				-0.3
1,210,262	+				-1.4
1,210,262	+				+0.3
1,210,263	-				-0.4
1,210,263	-				-0.3
1,210,263	-				-1.1
1,210,263	-				+0.5
1,210,287	+		Sama_0998	0.12	-1.5
1,210,288	-		Sama_0998	0.12	-0.8
1,210,288	-		Sama_0998	0.12	-0.4
1,210,328	+		Sama_0998	0.16	+0.2
1,210,328	+		Sama_0998	0.16	-1.8
1,210,328	+		Sama_0998	0.16	-0.7
1,210,328	+		Sama_0998	0.16	+3.9
1,210,328	+		Sama_0998	0.16	-1.6
1,210,328	+		Sama_0998	0.16	-1.6
1,210,329	-		Sama_0998	0.16	+0.6