Strain Fitness in Shewanella amazonensis SB2B around Sama_0902

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
1,089,470	-		Sama_0900	0.68	-1.4
1,089,470	-		Sama_0900	0.68	+1.0
1,089,484	+		Sama_0900	0.70	-1.0
1,089,484	+		Sama_0900	0.70	+1.4
1,089,484	+		Sama_0900	0.70	+1.9
1,089,484	+		Sama_0900	0.70	-0.1
1,089,484	+		Sama_0900	0.70	+1.6
1,089,490	+		Sama_0900	0.71	+4.2
1,089,490	+		Sama_0900	0.71	+0.4
1,089,490	+		Sama_0900	0.71	-0.4
1,089,490	+		Sama_0900	0.71	-3.2
1,089,490	+		Sama_0900	0.71	+2.9
1,089,490	+		Sama_0900	0.71	-0.4
1,089,490	+		Sama_0900	0.71	-1.4
1,089,490	+		Sama_0900	0.71	-0.6
1,089,490	+		Sama_0900	0.71	-0.5
1,089,490	+		Sama_0900	0.71	+0.3
1,089,490	+		Sama_0900	0.71	+0.9
1,089,490	+		Sama_0900	0.71	-0.5
1,089,491	-		Sama_0900	0.71	+4.7
1,089,491	-		Sama_0900	0.71	+0.4
1,089,511	+		Sama_0900	0.74	-0.4
1,089,511	+		Sama_0900	0.74	-0.7
1,089,511	+		Sama_0900	0.74	-0.5
1,089,511	+		Sama_0900	0.74	-1.0
1,089,512	-		Sama_0900	0.74	+0.0
1,089,529	+		Sama_0900	0.76	+0.2
1,089,529	+		Sama_0900	0.76	-0.3
1,089,583	+		Sama_0900	0.84	-2.9
1,089,583	+		Sama_0900	0.84	+2.0
1,089,583	+		Sama_0900	0.84	+4.8
1,089,583	+		Sama_0900	0.84	-2.0
1,089,583	+		Sama_0900	0.84	-1.6
1,089,584	-		Sama_0900	0.85	-0.4
1,089,587	+		Sama_0900	0.85	+0.1
1,089,640	+				-1.3
1,089,640	+				+3.5
1,089,641	-				+0.3
1,089,641	-				-0.4
1,089,644	+				+0.6
1,089,644	+				-0.0
1,089,644	+				+0.1
1,089,644	+				+1.4
1,089,644	+				+0.4
1,089,645	-				-1.5
1,089,645	-				-1.1
1,089,651	+				+2.1
1,089,651	+				+3.6
1,089,652	-				-0.7
1,089,655	+				-1.4
1,089,655	+				-0.1
1,089,655	+				+4.8
1,089,655	+				-0.2
1,089,655	+				-0.7
1,089,656	-				-0.3
1,089,656	-				-0.3
1,089,656	-				-0.9
1,089,684	+				-0.5
1,089,685	-				-0.7
1,089,694	+				+0.9
1,089,751	+				-1.9
1,089,752	-				+2.0
1,089,752	-				+0.1
1,089,763	+				+2.4
1,089,763	+				-0.5
1,089,763	+				+1.4
1,089,763	+				-1.7
1,089,763	+				+1.0
1,089,764	-				-0.2
1,089,783	-				+0.2
1,089,783	-				+0.7
1,089,798	-		Sama_0901	0.11	-0.0
1,089,803	+		Sama_0901	0.12	-1.2
1,089,803	+		Sama_0901	0.12	+1.5
1,089,803	+		Sama_0901	0.12	+4.8
1,089,804	-		Sama_0901	0.12	-1.8
1,089,804	-		Sama_0901	0.12	+0.7
1,089,804	-		Sama_0901	0.12	-0.0
1,089,804	-		Sama_0901	0.12	+2.8
1,089,804	-		Sama_0901	0.12	+0.6
1,089,804	-		Sama_0901	0.12	-0.2
1,089,884	+		Sama_0901	0.30	-1.4
1,089,884	+		Sama_0901	0.30	+0.7
1,089,884	+		Sama_0901	0.30	+1.3
1,089,884	+		Sama_0901	0.30	+1.3
1,089,885	-		Sama_0901	0.30	+0.1
1,089,885	-		Sama_0901	0.30	+0.3
1,089,885	-		Sama_0901	0.30	-2.6
1,089,960	-		Sama_0901	0.47	-1.2
1,089,993	+		Sama_0901	0.55	+0.1
1,090,040	+		Sama_0901	0.65	+0.5
1,090,041	-		Sama_0901	0.66	+0.3
1,090,041	-		Sama_0901	0.66	+1.9
1,090,041	-		Sama_0901	0.66	-0.5
1,090,041	-		Sama_0901	0.66	-3.0
1,090,041	-		Sama_0901	0.66	-1.5
1,090,075	+		Sama_0901	0.73	+0.9
1,090,076	-		Sama_0901	0.73	+3.2
1,090,076	-		Sama_0901	0.73	-0.4
1,090,106	-		Sama_0901	0.80	-0.5
1,090,197	+				-1.5
1,090,244	+				+3.7
1,090,244	+				-0.9
1,090,264	+				+2.6
1,090,265	-				-1.8
1,090,265	-				-2.0
1,090,265	-				+0.0
1,090,265	-				-0.7
1,090,305	+				+1.0
1,090,305	+				-0.9
1,090,306	-				-1.3
1,090,306	-				+0.9
1,090,306	-				-1.8
1,090,317	+				+0.8
1,090,317	+				+1.2
1,090,337	+				-0.0
1,090,337	+				-0.0
1,090,337	+				+2.5
1,090,338	-				+0.3
1,090,338	-				-0.4
1,090,338	-				+1.4
1,090,355	+				+1.1
1,090,355	+				+1.2
1,090,355	+				-0.1
1,090,355	+				-0.4
1,090,355	+				-0.0
1,090,355	+				-1.7
1,090,355	+				+1.1
1,090,355	+				+1.3
1,090,356	-				+0.3
1,090,356	-				+0.8
1,090,356	-				+4.7
1,090,356	-				+0.0
1,090,356	-				+1.3
1,090,356	-				+1.4
1,090,356	-				+3.1
1,090,356	-				+0.1
1,090,356	-				+0.2
1,090,356	-				+0.3
1,090,356	-				-1.1
1,090,356	-				-0.0
1,090,374	+				+1.0
1,090,375	+				-0.6
1,090,375	+				+1.6
1,090,376	-				+0.3
1,090,376	-				+2.1
1,090,376	-				-1.4
1,090,378	+				+0.7
1,090,378	+				-0.2
1,090,379	-				-0.2
1,090,379	-				+1.0
1,090,379	-				+0.2
1,090,408	+				+3.9
1,090,413	+		Sama_0902	0.11	-0.1
1,090,459	-		Sama_0902	0.27	+1.6
1,090,465	+		Sama_0902	0.29	+3.9
1,090,466	-		Sama_0902	0.29	+4.2
1,090,533	-		Sama_0902	0.52	+2.3
1,090,594	+		Sama_0902	0.72	+1.7
1,090,595	-		Sama_0902	0.73	-0.0
1,090,595	-		Sama_0902	0.73	-2.2
1,090,598	+		Sama_0902	0.74	-0.9
1,090,598	+		Sama_0902	0.74	-0.5
1,090,599	-		Sama_0902	0.74	+0.5
1,090,599	-		Sama_0902	0.74	+0.5
1,090,635	+		Sama_0902	0.86	+1.8
1,090,636	-		Sama_0902	0.87	-0.6
1,090,650	+				-0.7
1,090,650	+				+2.1
1,090,651	-				+1.3
1,090,651	-				-0.5
1,090,651	-				-2.2
1,090,677	+				-1.2
1,090,697	+				+0.2
1,090,697	+				-0.9
1,090,698	-				-2.7
1,090,737	+		Sama_0903	0.16	+2.6
1,090,738	-		Sama_0903	0.16	-2.3
1,090,746	+		Sama_0903	0.19	+2.6
1,090,747	-		Sama_0903	0.19	-1.4
1,090,761	-		Sama_0903	0.22	+0.6
1,090,774	+		Sama_0903	0.26	-0.9
1,090,845	+		Sama_0903	0.45	+3.4
1,090,845	+		Sama_0903	0.45	+3.0
1,090,846	-		Sama_0903	0.45	-0.1
1,090,920	+		Sama_0903	0.65	-0.3
1,090,920	+		Sama_0903	0.65	-0.7
1,090,920	+		Sama_0903	0.65	-1.2
1,090,920	+		Sama_0903	0.65	-1.2
1,090,949	+		Sama_0903	0.72	-1.4
1,090,949	+		Sama_0903	0.72	-2.2
1,090,949	+		Sama_0903	0.72	-1.4
1,090,950	-		Sama_0903	0.72	+1.1
1,090,950	-		Sama_0903	0.72	+4.9
1,090,950	-		Sama_0903	0.72	+0.0
1,091,034	+				+0.2
1,091,034	+				-0.2
1,091,034	+				-1.7
1,091,035	-				-0.9
1,091,053	+				+0.0
1,091,053	+				-1.9
1,091,053	+				-0.7
1,091,053	+				-1.0
1,091,053	+				+0.5
1,091,053	+				+1.4
1,091,053	+				-1.4
1,091,053	+				-0.3
1,091,053	+				+0.6
1,091,053	+				+0.9
1,091,053	+				+0.3
1,091,053	+				-1.9
1,091,053	+				-1.6
1,091,054	-				-1.2
1,091,054	-				-1.6
1,091,054	-				+0.1
1,091,054	-				-0.9
1,091,054	-				+3.5
1,091,055	+				-1.0
1,091,055	+				+1.6
1,091,055	+				-1.1
1,091,055	+				+2.1
1,091,055	+				-0.2
1,091,055	+				-0.0
1,091,055	+				+0.8
1,091,055	+				-1.5
1,091,055	+				-1.2
1,091,055	+				-1.6
1,091,055	+				+1.8
1,091,055	+				-1.1
1,091,055	+				+0.4
1,091,055	+				-1.4
1,091,055	+				-1.1
1,091,055	+				-0.2
1,091,056	-				-0.2
1,091,056	-				-0.5
1,091,056	-				-0.9
1,091,056	-				+0.2
1,091,056	-				-1.0
1,091,056	-				-2.8
1,091,056	-				-0.5
1,091,072	+				-0.2
1,091,095	+				-2.9
1,091,097	+				-0.8
1,091,097	+				+0.6
1,091,097	+				-2.1
1,091,098	-				+1.6
1,091,098	-				+3.0
1,091,098	-				-0.5
1,091,098	-				+0.8
1,091,098	-				-1.9
1,091,100	+				+1.7
1,091,100	+				+0.1
1,091,101	-				+0.7
1,091,145	+				+0.8
1,091,151	+				+0.0
1,091,155	-				-0.5
1,091,166	-				-1.1
1,091,166	-				-0.4
1,091,197	+				-0.4
1,091,329	+		Sama_0904	0.26	+1.8
1,091,329	+		Sama_0904	0.26	+1.7
1,091,330	-		Sama_0904	0.26	+0.8
1,091,366	+		Sama_0904	0.32	-0.5
1,091,366	+		Sama_0904	0.32	-0.5
1,091,367	-		Sama_0904	0.32	-1.0
1,091,367	-		Sama_0904	0.32	+1.2
1,091,375	+		Sama_0904	0.33	+0.6
1,091,376	-		Sama_0904	0.33	+1.9
1,091,429	+		Sama_0904	0.42	+0.9
1,091,513	+		Sama_0904	0.56	+0.7
1,091,513	+		Sama_0904	0.56	+2.0
1,091,514	-		Sama_0904	0.56	-1.7
1,091,514	-		Sama_0904	0.56	+0.3
1,091,514	-		Sama_0904	0.56	-0.5
1,091,525	-		Sama_0904	0.58	+0.3
1,091,571	+		Sama_0904	0.65	-0.7
1,091,571	+		Sama_0904	0.65	-0.1
1,091,571	+		Sama_0904	0.65	-0.8
1,091,580	+		Sama_0904	0.67	+2.8
1,091,580	+		Sama_0904	0.67	+1.9
1,091,581	-		Sama_0904	0.67	+0.2
1,091,581	-		Sama_0904	0.67	-0.2
1,091,597	+		Sama_0904	0.70	+1.1
1,091,597	+		Sama_0904	0.70	+0.6
1,091,597	+		Sama_0904	0.70	+5.3
1,091,598	-		Sama_0904	0.70	-1.3
1,091,629	+		Sama_0904	0.75	+1.5
1,091,630	-		Sama_0904	0.75	+3.1
1,091,630	-		Sama_0904	0.75	+2.1