Strain Fitness in Shewanella amazonensis SB2B around Sama_0419
Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | L-Aspartic Acid (N) |
---|---|---|---|---|---|
remove | |||||
514,756 | - | -0.8 | |||
514,756 | - | -2.7 | |||
514,860 | + | Sama_0418 | 0.19 | -2.2 | |
514,860 | + | Sama_0418 | 0.19 | -0.0 | |
514,863 | + | Sama_0418 | 0.19 | +1.7 | |
514,863 | + | Sama_0418 | 0.19 | +1.2 | |
514,864 | - | Sama_0418 | 0.20 | -1.1 | |
514,864 | - | Sama_0418 | 0.20 | +0.1 | |
514,864 | - | Sama_0418 | 0.20 | -2.8 | |
514,864 | - | Sama_0418 | 0.20 | -0.2 | |
514,871 | - | Sama_0418 | 0.20 | -0.1 | |
514,871 | - | Sama_0418 | 0.20 | +2.0 | |
514,871 | - | Sama_0418 | 0.20 | +0.0 | |
514,955 | + | Sama_0418 | 0.30 | -0.5 | |
514,975 | + | Sama_0418 | 0.32 | +5.1 | |
514,975 | + | Sama_0418 | 0.32 | -1.2 | |
514,975 | + | Sama_0418 | 0.32 | -1.5 | |
514,976 | - | Sama_0418 | 0.32 | +2.3 | |
514,981 | + | Sama_0418 | 0.33 | +0.7 | |
514,981 | + | Sama_0418 | 0.33 | -1.6 | |
514,981 | + | Sama_0418 | 0.33 | -2.7 | |
514,981 | + | Sama_0418 | 0.33 | -1.1 | |
514,982 | - | Sama_0418 | 0.33 | -0.6 | |
514,982 | - | Sama_0418 | 0.33 | +1.0 | |
514,982 | - | Sama_0418 | 0.33 | +2.0 | |
514,982 | - | Sama_0418 | 0.33 | -1.0 | |
514,982 | - | Sama_0418 | 0.33 | -0.7 | |
514,982 | - | Sama_0418 | 0.33 | +2.0 | |
514,993 | - | Sama_0418 | 0.34 | -0.6 | |
515,013 | - | Sama_0418 | 0.36 | +0.6 | |
515,013 | - | Sama_0418 | 0.36 | -0.7 | |
515,013 | - | Sama_0418 | 0.36 | +3.5 | |
515,024 | + | Sama_0418 | 0.37 | -0.3 | |
515,025 | - | Sama_0418 | 0.38 | +1.4 | |
515,026 | + | Sama_0418 | 0.38 | -0.3 | |
515,026 | + | Sama_0418 | 0.38 | -1.4 | |
515,026 | + | Sama_0418 | 0.38 | +1.4 | |
515,027 | - | Sama_0418 | 0.38 | +0.0 | |
515,027 | - | Sama_0418 | 0.38 | +0.0 | |
515,036 | + | Sama_0418 | 0.39 | +3.9 | |
515,059 | - | Sama_0418 | 0.41 | -0.3 | |
515,130 | + | Sama_0418 | 0.49 | -0.6 | |
515,130 | + | Sama_0418 | 0.49 | -2.8 | |
515,130 | + | Sama_0418 | 0.49 | -1.1 | |
515,130 | + | Sama_0418 | 0.49 | +1.0 | |
515,130 | + | Sama_0418 | 0.49 | +0.3 | |
515,130 | + | Sama_0418 | 0.49 | +3.9 | |
515,131 | - | Sama_0418 | 0.49 | -2.4 | |
515,131 | - | Sama_0418 | 0.49 | -1.3 | |
515,131 | - | Sama_0418 | 0.49 | +1.0 | |
515,131 | - | Sama_0418 | 0.49 | +1.0 | |
515,161 | + | Sama_0418 | 0.53 | -1.7 | |
515,161 | + | Sama_0418 | 0.53 | +1.9 | |
515,161 | + | Sama_0418 | 0.53 | +1.3 | |
515,161 | + | Sama_0418 | 0.53 | +2.0 | |
515,161 | + | Sama_0418 | 0.53 | +0.3 | |
515,161 | + | Sama_0418 | 0.53 | -1.0 | |
515,161 | + | Sama_0418 | 0.53 | +0.3 | |
515,161 | + | Sama_0418 | 0.53 | -1.6 | |
515,162 | - | Sama_0418 | 0.53 | -1.2 | |
515,162 | - | Sama_0418 | 0.53 | -0.7 | |
515,162 | - | Sama_0418 | 0.53 | -0.2 | |
515,162 | - | Sama_0418 | 0.53 | -0.0 | |
515,363 | + | Sama_0418 | 0.75 | -0.3 | |
515,378 | + | Sama_0418 | 0.77 | +0.1 | |
515,379 | - | Sama_0418 | 0.77 | +1.7 | |
515,379 | - | Sama_0418 | 0.77 | +0.0 | |
515,379 | - | Sama_0418 | 0.77 | +0.2 | |
515,412 | - | Sama_0418 | 0.81 | +2.5 | |
515,461 | + | Sama_0418 | 0.86 | -2.3 | |
515,527 | + | -2.1 | |||
515,527 | + | -1.2 | |||
515,528 | - | -0.8 | |||
515,528 | - | -0.5 | |||
515,528 | - | -1.5 | |||
515,528 | - | -1.1 | |||
515,528 | - | -0.4 | |||
515,567 | - | +0.7 | |||
515,575 | + | +2.4 | |||
515,575 | + | -0.8 | |||
515,575 | + | +1.3 | |||
515,575 | + | -0.2 | |||
515,575 | + | +0.7 | |||
515,575 | + | +0.9 | |||
515,575 | + | +1.2 | |||
515,576 | - | +0.3 | |||
515,576 | - | -2.0 | |||
515,576 | - | +0.0 | |||
515,576 | - | +1.7 | |||
515,576 | - | -0.4 | |||
515,624 | + | +1.0 | |||
515,624 | + | -0.8 | |||
515,625 | - | -0.2 | |||
515,625 | - | -1.2 | |||
515,625 | - | +2.7 | |||
515,629 | + | +1.4 | |||
515,700 | + | +5.3 | |||
515,700 | + | +4.1 | |||
515,701 | - | +2.5 | |||
515,701 | - | +0.7 | |||
515,701 | - | -1.7 | |||
515,701 | - | +0.5 | |||
515,702 | + | -0.1 | |||
515,702 | + | +0.7 | |||
515,702 | + | -0.9 | |||
515,702 | + | +1.4 | |||
515,703 | - | +0.0 | |||
515,703 | - | +2.8 | |||
515,703 | - | -0.9 | |||
515,703 | - | -1.0 | |||
515,767 | + | -0.3 | |||
515,768 | - | +4.6 | |||
515,768 | - | +2.8 | |||
515,991 | + | uvrD | Sama_0419 | 0.12 | +0.0 |
515,991 | + | uvrD | Sama_0419 | 0.12 | +1.0 |
515,991 | + | uvrD | Sama_0419 | 0.12 | +0.8 |
515,991 | + | uvrD | Sama_0419 | 0.12 | -1.8 |
515,991 | + | uvrD | Sama_0419 | 0.12 | +1.4 |
515,992 | - | uvrD | Sama_0419 | 0.12 | -1.2 |
515,992 | - | uvrD | Sama_0419 | 0.12 | +0.0 |
515,995 | + | uvrD | Sama_0419 | 0.12 | -0.8 |
515,995 | + | uvrD | Sama_0419 | 0.12 | -1.1 |
515,995 | + | uvrD | Sama_0419 | 0.12 | -0.6 |
515,995 | + | uvrD | Sama_0419 | 0.12 | -0.4 |
516,164 | + | uvrD | Sama_0419 | 0.20 | -1.6 |
516,164 | + | uvrD | Sama_0419 | 0.20 | +0.2 |
516,164 | + | uvrD | Sama_0419 | 0.20 | +1.9 |
516,166 | + | uvrD | Sama_0419 | 0.20 | +2.1 |
516,166 | + | uvrD | Sama_0419 | 0.20 | +4.9 |
516,166 | + | uvrD | Sama_0419 | 0.20 | +1.5 |
516,167 | - | uvrD | Sama_0419 | 0.20 | +4.7 |
516,167 | - | uvrD | Sama_0419 | 0.20 | +0.2 |
516,205 | + | uvrD | Sama_0419 | 0.22 | -2.1 |
516,207 | + | uvrD | Sama_0419 | 0.22 | -0.7 |
516,207 | + | uvrD | Sama_0419 | 0.22 | +1.1 |
516,207 | + | uvrD | Sama_0419 | 0.22 | +0.6 |
516,208 | - | uvrD | Sama_0419 | 0.22 | +5.7 |
516,208 | - | uvrD | Sama_0419 | 0.22 | -0.0 |
516,208 | - | uvrD | Sama_0419 | 0.22 | +5.2 |
516,208 | - | uvrD | Sama_0419 | 0.22 | +0.0 |
516,208 | - | uvrD | Sama_0419 | 0.22 | +1.3 |
516,226 | + | uvrD | Sama_0419 | 0.23 | +1.7 |
516,251 | + | uvrD | Sama_0419 | 0.24 | +4.4 |
516,256 | + | uvrD | Sama_0419 | 0.24 | -1.8 |
516,256 | + | uvrD | Sama_0419 | 0.24 | +2.0 |
516,256 | + | uvrD | Sama_0419 | 0.24 | -0.5 |
516,256 | + | uvrD | Sama_0419 | 0.24 | -1.6 |
516,257 | - | uvrD | Sama_0419 | 0.24 | +0.0 |
516,257 | - | uvrD | Sama_0419 | 0.24 | +2.3 |
516,257 | - | uvrD | Sama_0419 | 0.24 | +1.2 |
516,260 | + | uvrD | Sama_0419 | 0.24 | -0.3 |
516,260 | + | uvrD | Sama_0419 | 0.24 | +1.6 |
516,337 | + | uvrD | Sama_0419 | 0.28 | -0.9 |
516,338 | - | uvrD | Sama_0419 | 0.28 | +6.6 |
516,359 | + | uvrD | Sama_0419 | 0.29 | +1.7 |
516,380 | - | uvrD | Sama_0419 | 0.30 | -0.7 |
516,380 | - | uvrD | Sama_0419 | 0.30 | -1.1 |
516,419 | + | uvrD | Sama_0419 | 0.32 | -1.5 |
516,420 | - | uvrD | Sama_0419 | 0.32 | +0.3 |
516,562 | - | uvrD | Sama_0419 | 0.38 | -0.5 |
516,562 | - | uvrD | Sama_0419 | 0.38 | -1.2 |
516,562 | - | uvrD | Sama_0419 | 0.38 | +0.9 |
516,619 | + | uvrD | Sama_0419 | 0.41 | -0.2 |
516,641 | - | uvrD | Sama_0419 | 0.42 | -0.5 |
516,693 | - | uvrD | Sama_0419 | 0.44 | -1.6 |
516,693 | - | uvrD | Sama_0419 | 0.44 | +2.6 |
516,727 | + | uvrD | Sama_0419 | 0.46 | -0.5 |
516,727 | + | uvrD | Sama_0419 | 0.46 | +3.6 |
516,727 | + | uvrD | Sama_0419 | 0.46 | -1.0 |
516,727 | + | uvrD | Sama_0419 | 0.46 | +0.2 |
516,728 | - | uvrD | Sama_0419 | 0.46 | +1.9 |
516,728 | - | uvrD | Sama_0419 | 0.46 | -1.8 |
516,852 | - | uvrD | Sama_0419 | 0.52 | +1.0 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.5 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.9 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.3 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.7 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.2 |
516,856 | + | uvrD | Sama_0419 | 0.52 | +0.9 |
516,856 | + | uvrD | Sama_0419 | 0.52 | -0.6 |
516,856 | + | uvrD | Sama_0419 | 0.52 | +0.4 |
516,857 | - | uvrD | Sama_0419 | 0.52 | +0.4 |
516,857 | - | uvrD | Sama_0419 | 0.52 | +3.5 |
516,857 | - | uvrD | Sama_0419 | 0.52 | +4.5 |
516,857 | - | uvrD | Sama_0419 | 0.52 | -1.8 |
516,857 | - | uvrD | Sama_0419 | 0.52 | -1.3 |
516,857 | - | uvrD | Sama_0419 | 0.52 | -1.0 |
516,860 | + | uvrD | Sama_0419 | 0.52 | -1.6 |
516,860 | + | uvrD | Sama_0419 | 0.52 | -1.9 |
516,860 | + | uvrD | Sama_0419 | 0.52 | -0.4 |
516,860 | + | uvrD | Sama_0419 | 0.52 | -1.5 |
516,860 | + | uvrD | Sama_0419 | 0.52 | +2.1 |
516,860 | + | uvrD | Sama_0419 | 0.52 | -0.3 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -0.8 |
516,861 | - | uvrD | Sama_0419 | 0.52 | +0.0 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -1.3 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -1.7 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -1.1 |
516,861 | - | uvrD | Sama_0419 | 0.52 | +0.4 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -2.4 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -0.5 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -0.7 |
516,861 | - | uvrD | Sama_0419 | 0.52 | -0.9 |
516,861 | - | uvrD | Sama_0419 | 0.52 | +5.0 |
516,911 | + | uvrD | Sama_0419 | 0.54 | +0.2 |
516,922 | + | uvrD | Sama_0419 | 0.55 | -1.6 |
516,923 | - | uvrD | Sama_0419 | 0.55 | +0.2 |
516,923 | - | uvrD | Sama_0419 | 0.55 | -1.4 |
516,984 | + | uvrD | Sama_0419 | 0.58 | +0.3 |
516,984 | + | uvrD | Sama_0419 | 0.58 | -0.8 |
516,984 | + | uvrD | Sama_0419 | 0.58 | +0.7 |
516,985 | - | uvrD | Sama_0419 | 0.58 | -2.4 |
516,985 | - | uvrD | Sama_0419 | 0.58 | +3.9 |
516,985 | - | uvrD | Sama_0419 | 0.58 | +0.4 |
516,985 | - | uvrD | Sama_0419 | 0.58 | -0.6 |
516,985 | - | uvrD | Sama_0419 | 0.58 | -0.5 |
516,985 | - | uvrD | Sama_0419 | 0.58 | -2.8 |
517,004 | - | uvrD | Sama_0419 | 0.59 | -1.5 |
517,004 | - | uvrD | Sama_0419 | 0.59 | +3.6 |
517,016 | - | uvrD | Sama_0419 | 0.59 | -1.7 |
517,016 | - | uvrD | Sama_0419 | 0.59 | -1.7 |
517,201 | + | uvrD | Sama_0419 | 0.68 | +1.3 |
517,202 | - | uvrD | Sama_0419 | 0.68 | +1.8 |
517,202 | - | uvrD | Sama_0419 | 0.68 | +1.4 |
517,211 | + | uvrD | Sama_0419 | 0.68 | +0.2 |
517,211 | + | uvrD | Sama_0419 | 0.68 | -0.5 |
517,211 | + | uvrD | Sama_0419 | 0.68 | -1.2 |
517,211 | + | uvrD | Sama_0419 | 0.68 | +0.8 |
517,212 | - | uvrD | Sama_0419 | 0.68 | +0.4 |
517,212 | - | uvrD | Sama_0419 | 0.68 | -2.3 |
517,212 | - | uvrD | Sama_0419 | 0.68 | +2.4 |
517,212 | - | uvrD | Sama_0419 | 0.68 | +0.3 |
517,212 | - | uvrD | Sama_0419 | 0.68 | -1.8 |
517,467 | + | uvrD | Sama_0419 | 0.80 | -1.5 |
517,467 | + | uvrD | Sama_0419 | 0.80 | +1.8 |
517,467 | + | uvrD | Sama_0419 | 0.80 | +4.7 |
517,467 | + | uvrD | Sama_0419 | 0.80 | -0.5 |
517,467 | + | uvrD | Sama_0419 | 0.80 | +2.7 |
517,468 | - | uvrD | Sama_0419 | 0.80 | -1.0 |
517,468 | - | uvrD | Sama_0419 | 0.80 | +0.6 |
517,478 | - | uvrD | Sama_0419 | 0.81 | +1.2 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -2.0 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -0.8 |
517,529 | + | uvrD | Sama_0419 | 0.83 | +2.1 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -0.9 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -0.2 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -0.5 |
517,529 | + | uvrD | Sama_0419 | 0.83 | -0.8 |
517,529 | + | uvrD | Sama_0419 | 0.83 | +3.4 |
517,530 | - | uvrD | Sama_0419 | 0.83 | +2.0 |
517,530 | - | uvrD | Sama_0419 | 0.83 | -1.1 |
517,530 | - | uvrD | Sama_0419 | 0.83 | -1.2 |
517,530 | - | uvrD | Sama_0419 | 0.83 | -1.6 |
517,530 | - | uvrD | Sama_0419 | 0.83 | +2.9 |
517,530 | - | uvrD | Sama_0419 | 0.83 | -1.8 |
517,530 | - | uvrD | Sama_0419 | 0.83 | +0.6 |
517,537 | + | uvrD | Sama_0419 | 0.83 | +3.3 |
517,562 | + | uvrD | Sama_0419 | 0.84 | +1.7 |
517,562 | + | uvrD | Sama_0419 | 0.84 | +2.1 |
517,562 | + | uvrD | Sama_0419 | 0.84 | -0.2 |
517,562 | + | uvrD | Sama_0419 | 0.84 | +0.2 |
517,563 | - | uvrD | Sama_0419 | 0.85 | -1.2 |
517,563 | - | uvrD | Sama_0419 | 0.85 | -1.1 |
517,564 | + | uvrD | Sama_0419 | 0.85 | +2.1 |
517,564 | + | uvrD | Sama_0419 | 0.85 | +3.7 |
517,564 | + | uvrD | Sama_0419 | 0.85 | -2.1 |
517,565 | - | uvrD | Sama_0419 | 0.85 | -0.2 |
517,565 | - | uvrD | Sama_0419 | 0.85 | +3.5 |
517,565 | - | uvrD | Sama_0419 | 0.85 | -0.8 |
517,571 | + | uvrD | Sama_0419 | 0.85 | -0.6 |
517,571 | + | uvrD | Sama_0419 | 0.85 | -1.2 |
517,571 | + | uvrD | Sama_0419 | 0.85 | +0.0 |
517,571 | + | uvrD | Sama_0419 | 0.85 | -1.4 |
517,571 | + | uvrD | Sama_0419 | 0.85 | -2.1 |
517,572 | - | uvrD | Sama_0419 | 0.85 | -1.9 |
517,572 | - | uvrD | Sama_0419 | 0.85 | +1.6 |
517,572 | - | uvrD | Sama_0419 | 0.85 | +0.4 |
517,588 | + | uvrD | Sama_0419 | 0.86 | -0.9 |
517,588 | + | uvrD | Sama_0419 | 0.86 | +0.3 |
517,589 | - | uvrD | Sama_0419 | 0.86 | -0.2 |
517,589 | - | uvrD | Sama_0419 | 0.86 | -1.6 |
517,589 | - | uvrD | Sama_0419 | 0.86 | -1.2 |
517,592 | + | uvrD | Sama_0419 | 0.86 | +1.0 |
517,592 | + | uvrD | Sama_0419 | 0.86 | -1.2 |
517,593 | - | uvrD | Sama_0419 | 0.86 | +1.7 |
517,593 | - | uvrD | Sama_0419 | 0.86 | +1.0 |
517,593 | - | uvrD | Sama_0419 | 0.86 | +2.6 |
517,593 | - | uvrD | Sama_0419 | 0.86 | -1.1 |
517,593 | - | uvrD | Sama_0419 | 0.86 | -0.7 |
517,593 | - | uvrD | Sama_0419 | 0.86 | -1.9 |
517,593 | - | uvrD | Sama_0419 | 0.86 | +0.2 |
517,607 | + | uvrD | Sama_0419 | 0.87 | -0.5 |
517,608 | - | uvrD | Sama_0419 | 0.87 | -0.5 |
517,608 | - | uvrD | Sama_0419 | 0.87 | -1.6 |
517,627 | + | uvrD | Sama_0419 | 0.87 | -0.8 |
517,649 | + | uvrD | Sama_0419 | 0.89 | -0.6 |
517,649 | + | uvrD | Sama_0419 | 0.89 | -0.6 |
517,649 | + | uvrD | Sama_0419 | 0.89 | -0.3 |
517,650 | - | uvrD | Sama_0419 | 0.89 | +0.6 |
517,650 | - | uvrD | Sama_0419 | 0.89 | -0.3 |
517,650 | - | uvrD | Sama_0419 | 0.89 | -0.4 |
517,669 | + | uvrD | Sama_0419 | 0.89 | -0.8 |
517,730 | - | +5.5 | |||
517,730 | - | -1.7 | |||
517,744 | - | -1.4 | |||
517,771 | + | -0.4 | |||
517,772 | - | -0.5 | |||
517,799 | + | +0.4 | |||
517,799 | + | +0.4 | |||
517,799 | + | -1.4 | |||
517,799 | + | +0.7 | |||
517,800 | - | +0.0 | |||
517,827 | + | -0.2 | |||
517,827 | + | -0.8 | |||
517,828 | - | -1.2 | |||
517,828 | - | -2.2 | |||
517,875 | - | -0.8 | |||
517,875 | - | +0.7 | |||
517,935 | + | +2.1 | |||
518,007 | + | -0.2 | |||
518,007 | + | +3.4 | |||
518,010 | + | +0.4 | |||
518,847 | + | +1.9 | |||
518,847 | + | +1.0 |
Or see this region's nucleotide sequence