Strain Fitness in Shewanella amazonensis SB2B around Sama_0138

Experiment: L-Aspartic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Aspartic Acid (N)
153,843	-		Sama_0136	0.90	+0.4
153,909	+				-2.2
153,910	-				-0.8
153,910	-				+0.0
153,910	-				+0.9
153,910	-				+1.5
153,910	-				-1.9
153,910	-				-1.3
153,942	+				-0.5
153,942	+				-3.0
153,943	-				-0.6
153,943	-				-0.6
153,959	+				+0.1
153,959	+				+0.7
153,959	+				+2.1
153,991	+				-0.4
153,991	+				+4.4
153,992	-				+1.6
153,992	-				-0.6
154,038	+				-0.3
154,038	+				-1.0
154,121	+		Sama_0137	0.17	+0.7
154,122	-		Sama_0137	0.17	-2.2
154,122	-		Sama_0137	0.17	+0.7
154,122	-		Sama_0137	0.17	-0.6
154,140	+		Sama_0137	0.20	+1.3
154,140	+		Sama_0137	0.20	+3.0
154,140	+		Sama_0137	0.20	+0.5
154,140	+		Sama_0137	0.20	+2.1
154,140	+		Sama_0137	0.20	-0.1
154,140	+		Sama_0137	0.20	+0.2
154,140	+		Sama_0137	0.20	+1.2
154,140	+		Sama_0137	0.20	+1.5
154,140	+		Sama_0137	0.20	+0.2
154,141	-		Sama_0137	0.20	+2.0
154,141	-		Sama_0137	0.20	+4.3
154,141	-		Sama_0137	0.20	+0.8
154,141	-		Sama_0137	0.20	+2.3
154,141	-		Sama_0137	0.20	+0.2
154,175	+		Sama_0137	0.24	-0.2
154,176	-		Sama_0137	0.24	+0.2
154,231	+		Sama_0137	0.32	+0.1
154,231	+		Sama_0137	0.32	+1.4
154,231	+		Sama_0137	0.32	-0.6
154,232	-		Sama_0137	0.32	-3.0
154,232	-		Sama_0137	0.32	-2.2
154,253	-		Sama_0137	0.34	-2.1
154,253	-		Sama_0137	0.34	+1.3
154,253	-		Sama_0137	0.34	-1.0
154,253	-		Sama_0137	0.34	-0.2
154,253	-		Sama_0137	0.34	+0.2
154,265	+		Sama_0137	0.36	+0.5
154,308	+		Sama_0137	0.42	+0.9
154,308	+		Sama_0137	0.42	+1.7
154,308	+		Sama_0137	0.42	+2.1
154,308	+		Sama_0137	0.42	+1.5
154,309	-		Sama_0137	0.42	-0.3
154,309	-		Sama_0137	0.42	+2.7
154,309	-		Sama_0137	0.42	+3.3
154,313	+		Sama_0137	0.42	+2.7
154,314	-		Sama_0137	0.42	-1.0
154,314	-		Sama_0137	0.42	+0.9
154,314	-		Sama_0137	0.42	-0.1
154,440	+		Sama_0137	0.59	-0.5
154,441	-		Sama_0137	0.59	+0.2
154,457	+		Sama_0137	0.61	-0.2
154,458	-		Sama_0137	0.61	-0.2
154,458	-		Sama_0137	0.61	+0.4
154,458	-		Sama_0137	0.61	-1.8
154,521	+		Sama_0137	0.69	-0.8
154,521	+		Sama_0137	0.69	+0.1
154,604	-		Sama_0137	0.80	+2.4
154,604	-		Sama_0137	0.80	+1.7
154,604	-		Sama_0137	0.80	+1.1
154,680	+				+2.4
154,680	+				-0.6
154,680	+				-0.9
154,680	+				-2.3
154,680	+				-0.5
154,680	+				+1.0
154,680	+				-0.3
154,680	+				-0.1
154,680	+				-0.9
154,680	+				-1.7
154,680	+				-1.0
154,681	-				+0.9
154,681	-				+1.0
154,681	-				+0.1
154,681	-				-1.3
154,681	-				-0.9
154,681	-				+1.5
154,681	-				+1.7
154,681	-				-0.3
154,681	-				-0.8
154,681	-				-0.2
154,681	-				+0.9
154,681	-				-1.7
154,683	-				+0.6
154,683	-				+0.2
154,714	+				-0.1
154,714	+				-1.0
154,714	+				+2.3
154,715	-				-0.6
154,715	-				+0.8
154,720	-				+0.3
154,740	+				-2.5
154,740	+				-1.0
154,740	+				+2.5
154,740	+				+0.7
154,740	+				-1.1
154,741	-				-2.0
154,741	-				+0.7
154,741	-				-3.1
154,762	-				+1.2
154,774	+				+2.0
154,774	+				-0.8
154,795	+				-0.8
154,795	+				+1.2
154,795	+				-1.4
154,795	+				-1.4
154,795	+				-1.1
154,795	+				-0.2
154,841	-				-2.9
154,873	+				-0.5
154,873	+				-0.1
154,873	+				+5.1
154,873	+				-0.9
154,874	-				+0.5
154,874	-				+0.7
154,874	-				+0.2
154,874	-				+0.5
154,874	-				-0.5
154,930	+		Sama_0138	0.14	+0.4
154,932	-		Sama_0138	0.14	-1.8
154,932	-		Sama_0138	0.14	+0.9
154,932	-		Sama_0138	0.14	-2.4
155,041	+		Sama_0138	0.23	-1.3
155,042	-		Sama_0138	0.23	+1.6
155,042	-		Sama_0138	0.23	-0.3
155,042	-		Sama_0138	0.23	+0.5
155,364	+		Sama_0138	0.49	+0.9
155,364	+		Sama_0138	0.49	-1.6
155,365	-		Sama_0138	0.49	-0.3
155,365	-		Sama_0138	0.49	-2.1
155,380	-		Sama_0138	0.50	-1.7
155,380	-		Sama_0138	0.50	+2.6
155,462	+		Sama_0138	0.57	-0.3
155,462	+		Sama_0138	0.57	-0.2
155,463	-		Sama_0138	0.57	-1.0
155,463	-		Sama_0138	0.57	-0.5
155,522	+		Sama_0138	0.61	-1.3
155,522	+		Sama_0138	0.61	+4.1
155,522	+		Sama_0138	0.61	+3.8
155,522	+		Sama_0138	0.61	+1.1
155,522	+		Sama_0138	0.61	-1.9
155,523	-		Sama_0138	0.61	+0.3
155,523	-		Sama_0138	0.61	-1.6
155,523	-		Sama_0138	0.61	+3.3
155,523	-		Sama_0138	0.61	-0.1
155,554	+		Sama_0138	0.64	-0.1
155,554	+		Sama_0138	0.64	+2.7
155,554	+		Sama_0138	0.64	-0.9
155,555	-		Sama_0138	0.64	-3.5
155,555	-		Sama_0138	0.64	-1.0
155,608	+		Sama_0138	0.68	-2.6
155,609	-		Sama_0138	0.68	+1.1
155,726	-		Sama_0138	0.78	+2.1
155,871	-		Sama_0138	0.89	-1.2
155,896	+				+0.9
155,896	+				+1.1
155,897	-				-0.7
155,897	-				+1.4
155,897	-				-0.6
156,033	+				+1.4
156,033	+				+3.1
156,033	+				+0.6
156,033	+				+1.4
156,033	+				+0.0
156,033	+				-1.3
156,033	+				-1.3
156,033	+				+1.0
156,034	-				-2.1
156,034	-				+0.1
156,034	-				-1.2
156,034	-				-0.3
156,034	-				+0.2
156,034	-				+1.3
156,034	-				+2.0
156,034	-				-0.4
156,034	-				-1.3
156,034	-				-0.2
156,046	-				+0.9
156,046	-				-1.3
156,046	-				+1.7
156,057	+				-1.0
156,058	-				+0.1
156,065	+				-1.7
156,066	-				-0.3
156,066	-				-0.8
156,066	-				+0.9
156,071	+				-0.9
156,071	+				-0.0
156,071	+				+6.0
156,071	+				+2.3
156,071	+				+0.9
156,071	+				+4.9
156,071	+				-1.8
156,071	+				+2.2
156,071	+				+1.4
156,071	+				-1.0
156,072	-				-1.2
156,072	-				-2.0
156,072	-				+0.7
156,072	-				+1.0
156,177	+				-2.1
156,177	+				+0.7
156,177	+				-1.5
156,177	+				+0.5
156,178	-				-1.6
156,230	+				+3.4
156,230	+				-0.3
156,230	+				-1.0
156,230	+				-0.6
156,230	+				-1.8
156,231	-				-1.3
156,242	+				+0.7
156,242	+				-0.5
156,243	-				+1.0
156,243	-				+2.4
156,262	-		Sama_0139	0.12	-1.5
156,299	+		Sama_0139	0.15	-1.8
156,300	-		Sama_0139	0.15	+2.1
156,300	-		Sama_0139	0.15	+1.7
156,300	-		Sama_0139	0.15	-1.7
156,300	-		Sama_0139	0.15	+3.4
156,357	+		Sama_0139	0.20	-2.4
156,358	-		Sama_0139	0.21	-2.0
156,387	+		Sama_0139	0.23	+0.2
156,388	-		Sama_0139	0.23	-2.0
156,388	-		Sama_0139	0.23	-2.2
156,402	+		Sama_0139	0.25	+0.9
156,403	-		Sama_0139	0.25	-0.2
156,432	+		Sama_0139	0.27	-1.6
156,432	+		Sama_0139	0.27	-0.0
156,432	+		Sama_0139	0.27	+0.2
156,432	+		Sama_0139	0.27	-0.2
156,432	+		Sama_0139	0.27	+1.8
156,432	+		Sama_0139	0.27	-1.9
156,432	+		Sama_0139	0.27	+0.4
156,432	+		Sama_0139	0.27	-1.6
156,432	+		Sama_0139	0.27	-2.1
156,433	-		Sama_0139	0.28	+0.2
156,433	-		Sama_0139	0.28	-0.7
156,433	-		Sama_0139	0.28	-2.3
156,433	-		Sama_0139	0.28	+1.0
156,433	-		Sama_0139	0.28	-0.3
156,433	-		Sama_0139	0.28	+4.0
156,433	-		Sama_0139	0.28	-0.6
156,433	-		Sama_0139	0.28	-0.2
156,433	-		Sama_0139	0.28	-1.7
156,433	-		Sama_0139	0.28	+1.2
156,433	-		Sama_0139	0.28	-2.3
156,433	-		Sama_0139	0.28	-1.0
156,433	-		Sama_0139	0.28	-0.9
156,433	-		Sama_0139	0.28	-0.8
156,433	-		Sama_0139	0.28	-0.0
156,495	+		Sama_0139	0.33	-1.1
156,495	+		Sama_0139	0.33	-1.6
156,495	+		Sama_0139	0.33	-1.7
156,495	+		Sama_0139	0.33	+0.6
156,496	-		Sama_0139	0.33	+2.0
156,496	-		Sama_0139	0.33	+2.3
156,496	-		Sama_0139	0.33	-1.3
156,496	-		Sama_0139	0.33	+2.9
156,496	-		Sama_0139	0.33	-1.6
156,496	-		Sama_0139	0.33	+1.4
156,511	-		Sama_0139	0.35	+1.1
156,518	+		Sama_0139	0.35	-1.0
156,519	-		Sama_0139	0.36	-1.3
156,553	+		Sama_0139	0.39	+0.7
156,553	+		Sama_0139	0.39	-3.6
156,553	+		Sama_0139	0.39	-2.2
156,554	-		Sama_0139	0.39	-0.7
156,554	-		Sama_0139	0.39	+0.7
156,554	-		Sama_0139	0.39	+0.0
156,554	-		Sama_0139	0.39	-0.7
156,554	-		Sama_0139	0.39	+2.9
156,554	-		Sama_0139	0.39	+4.7
156,554	-		Sama_0139	0.39	+4.3
156,615	+		Sama_0139	0.45	-0.3
156,615	+		Sama_0139	0.45	-2.5
156,615	+		Sama_0139	0.45	-0.9
156,615	+		Sama_0139	0.45	-0.5
156,615	+		Sama_0139	0.45	+1.1
156,616	-		Sama_0139	0.45	-3.3
156,616	-		Sama_0139	0.45	-1.0
156,616	-		Sama_0139	0.45	+0.0
156,616	-		Sama_0139	0.45	-0.6
156,616	-		Sama_0139	0.45	-1.6
156,646	-		Sama_0139	0.47	-2.3
156,646	-		Sama_0139	0.47	-1.1
156,698	+		Sama_0139	0.52	+0.5
156,698	+		Sama_0139	0.52	-0.8
156,699	-		Sama_0139	0.52	-1.2
156,699	-		Sama_0139	0.52	+0.4
156,699	-		Sama_0139	0.52	-0.8
156,755	+		Sama_0139	0.58	-0.5
156,756	-		Sama_0139	0.58	-0.0
156,756	-		Sama_0139	0.58	+0.8
156,948	+		Sama_0139	0.76	-1.0