Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4119 and Dshi_4120 overlap by 4 nucleotides Dshi_4120 and Dshi_4121 are separated by 147 nucleotides
Dshi_4119: Dshi_4119 - NAD-dependent epimerase/dehydratase (RefSeq), at 50,748 to 51,629
_4119
Dshi_4120: Dshi_4120 - sugar transferase (RefSeq), at 51,626 to 52,234
_4120
Dshi_4121: Dshi_4121 - glycosyl transferase family 2 (RefSeq), at 52,382 to 54,934
_4121
Position (kb) 51
52
53 Strain fitness (log2 ratio) -1
0
1
2
3 at 50.672 kb on + strand at 50.680 kb on - strand at 50.701 kb on - strand at 50.766 kb on + strand at 51.188 kb on + strand, within Dshi_4119 at 51.189 kb on + strand, within Dshi_4119 at 51.375 kb on + strand, within Dshi_4119 at 51.375 kb on + strand, within Dshi_4119 at 52.118 kb on + strand, within Dshi_4120 at 52.146 kb on + strand, within Dshi_4120 at 52.273 kb on + strand at 52.306 kb on - strand at 52.390 kb on + strand at 52.489 kb on - strand at 52.631 kb on + strand at 52.822 kb on - strand, within Dshi_4121 at 52.832 kb on + strand, within Dshi_4121 at 52.857 kb on - strand, within Dshi_4121 at 52.862 kb on - strand, within Dshi_4121 at 53.008 kb on - strand, within Dshi_4121 at 53.014 kb on - strand, within Dshi_4121 at 53.048 kb on + strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.056 kb on - strand, within Dshi_4121 at 53.062 kb on + strand, within Dshi_4121
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 50,672 + -0.9 50,680 - -0.6 50,701 - +0.5 50,766 + -0.0 51,188 + Dshi_4119 0.50 -0.2 51,189 + Dshi_4119 0.50 -0.1 51,375 + Dshi_4119 0.71 +0.6 51,375 + Dshi_4119 0.71 -0.5 52,118 + Dshi_4120 0.81 +2.9 52,146 + Dshi_4120 0.85 +1.5 52,273 + -0.3 52,306 - -0.2 52,390 + +1.6 52,489 - +2.2 52,631 + +2.3 52,822 - Dshi_4121 0.17 +1.7 52,832 + Dshi_4121 0.18 +2.6 52,857 - Dshi_4121 0.19 +2.2 52,862 - Dshi_4121 0.19 +2.4 53,008 - Dshi_4121 0.25 +2.9 53,014 - Dshi_4121 0.25 +2.2 53,048 + Dshi_4121 0.26 +2.5 53,056 - Dshi_4121 0.26 +1.2 53,056 - Dshi_4121 0.26 +2.1 53,056 - Dshi_4121 0.26 +2.3 53,062 + Dshi_4121 0.27 +2.3
Or see this region's nucleotide sequence