Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0836 and Dshi_0837 are separated by 11 nucleotides Dshi_0837 and Dshi_0838 are separated by 280 nucleotides Dshi_0838 and Dshi_0839 are separated by 73 nucleotides
Dshi_0836: Dshi_0836 - acetyl-CoA acetyltransferase (RefSeq), at 846,270 to 847,481
_0836
Dshi_0837: Dshi_0837 - Glutathione S-transferase domain (RefSeq), at 847,493 to 848,128
_0837
Dshi_0838: Dshi_0838 - acyl-CoA dehydrogenase domain protein (RefSeq), at 848,409 to 849,557
_0838
Dshi_0839: Dshi_0839 - acyl-CoA dehydrogenase domain protein (RefSeq), at 849,631 to 851,409
_0839
Position (kb) 848
849
850 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 847.440 kb on - strand at 847.472 kb on - strand at 847.511 kb on + strand at 847.511 kb on + strand at 847.520 kb on + strand at 847.533 kb on - strand at 847.554 kb on + strand at 847.555 kb on + strand at 847.561 kb on - strand, within Dshi_0837 at 847.562 kb on - strand, within Dshi_0837 at 847.615 kb on + strand, within Dshi_0837 at 847.672 kb on + strand, within Dshi_0837 at 847.682 kb on + strand, within Dshi_0837 at 847.885 kb on - strand, within Dshi_0837 at 847.933 kb on + strand, within Dshi_0837 at 847.942 kb on - strand, within Dshi_0837 at 848.004 kb on - strand, within Dshi_0837 at 848.004 kb on - strand, within Dshi_0837 at 848.137 kb on - strand at 848.158 kb on - strand at 848.165 kb on + strand at 848.168 kb on - strand at 848.254 kb on + strand at 848.257 kb on - strand at 848.269 kb on - strand at 848.381 kb on - strand at 848.389 kb on - strand at 848.407 kb on + strand at 848.415 kb on - strand at 848.490 kb on - strand at 848.666 kb on - strand, within Dshi_0838 at 848.667 kb on + strand, within Dshi_0838 at 848.694 kb on + strand, within Dshi_0838 at 848.697 kb on - strand, within Dshi_0838 at 848.725 kb on - strand, within Dshi_0838 at 848.959 kb on - strand, within Dshi_0838 at 848.980 kb on + strand, within Dshi_0838 at 849.010 kb on + strand, within Dshi_0838 at 849.012 kb on + strand, within Dshi_0838 at 849.263 kb on - strand, within Dshi_0838 at 849.394 kb on + strand, within Dshi_0838 at 849.397 kb on - strand, within Dshi_0838 at 849.407 kb on - strand, within Dshi_0838 at 849.547 kb on + strand at 849.547 kb on - strand at 849.550 kb on + strand at 849.550 kb on - strand at 849.552 kb on + strand at 849.558 kb on - strand at 849.560 kb on - strand at 849.622 kb on + strand at 849.698 kb on - strand at 849.823 kb on - strand, within Dshi_0839 at 849.825 kb on + strand, within Dshi_0839 at 849.828 kb on - strand, within Dshi_0839 at 849.828 kb on - strand, within Dshi_0839 at 849.833 kb on - strand, within Dshi_0839 at 849.926 kb on + strand, within Dshi_0839 at 849.996 kb on - strand, within Dshi_0839 at 850.162 kb on + strand, within Dshi_0839 at 850.207 kb on + strand, within Dshi_0839 at 850.316 kb on - strand, within Dshi_0839
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 847,440 - -2.0 847,472 - +1.1 847,511 + -1.3 847,511 + +0.1 847,520 + -1.3 847,533 - +0.0 847,554 + -0.1 847,555 + +0.6 847,561 - Dshi_0837 0.11 -0.4 847,562 - Dshi_0837 0.11 +0.1 847,615 + Dshi_0837 0.19 +2.0 847,672 + Dshi_0837 0.28 +3.3 847,682 + Dshi_0837 0.30 -0.1 847,885 - Dshi_0837 0.62 -0.5 847,933 + Dshi_0837 0.69 +1.2 847,942 - Dshi_0837 0.71 +0.3 848,004 - Dshi_0837 0.80 -1.2 848,004 - Dshi_0837 0.80 -0.1 848,137 - -2.2 848,158 - -0.3 848,165 + -0.8 848,168 - +0.3 848,254 + +0.7 848,257 - +0.0 848,269 - +0.5 848,381 - -0.5 848,389 - -0.3 848,407 + -0.6 848,415 - +0.5 848,490 - +0.7 848,666 - Dshi_0838 0.22 -1.0 848,667 + Dshi_0838 0.22 -1.3 848,694 + Dshi_0838 0.25 -1.8 848,697 - Dshi_0838 0.25 +0.1 848,725 - Dshi_0838 0.28 -0.0 848,959 - Dshi_0838 0.48 -1.8 848,980 + Dshi_0838 0.50 +1.3 849,010 + Dshi_0838 0.52 +0.1 849,012 + Dshi_0838 0.52 +0.2 849,263 - Dshi_0838 0.74 +1.2 849,394 + Dshi_0838 0.86 -1.2 849,397 - Dshi_0838 0.86 -0.5 849,407 - Dshi_0838 0.87 -1.5 849,547 + +1.1 849,547 - +0.3 849,550 + -0.1 849,550 - -1.0 849,552 + -0.6 849,558 - +0.9 849,560 - +0.5 849,622 + -1.0 849,698 - -0.8 849,823 - Dshi_0839 0.11 +0.6 849,825 + Dshi_0839 0.11 -0.7 849,828 - Dshi_0839 0.11 -0.7 849,828 - Dshi_0839 0.11 +0.6 849,833 - Dshi_0839 0.11 +0.1 849,926 + Dshi_0839 0.17 -1.1 849,996 - Dshi_0839 0.21 +0.9 850,162 + Dshi_0839 0.30 +0.2 850,207 + Dshi_0839 0.32 +0.1 850,316 - Dshi_0839 0.39 +0.3
Or see this region's nucleotide sequence