Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0801 and Dshi_0802 overlap by 4 nucleotides Dshi_0802 and Dshi_0803 are separated by 50 nucleotides
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Dshi_0802: Dshi_0802 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 808,526 to 809,254
_0802
Dshi_0803: Dshi_0803 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 809,305 to 810,537
_0803
Position (kb) 808
809
810 Strain fitness (log2 ratio) -2
-1
0
1 at 807.548 kb on + strand, within Dshi_0801 at 807.652 kb on + strand, within Dshi_0801 at 807.662 kb on + strand, within Dshi_0801 at 807.663 kb on + strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.670 kb on - strand, within Dshi_0801 at 807.741 kb on + strand, within Dshi_0801 at 807.775 kb on - strand, within Dshi_0801 at 807.781 kb on - strand, within Dshi_0801 at 807.839 kb on + strand, within Dshi_0801 at 807.840 kb on + strand, within Dshi_0801 at 807.872 kb on + strand, within Dshi_0801 at 807.915 kb on + strand, within Dshi_0801 at 808.038 kb on + strand, within Dshi_0801 at 808.046 kb on - strand, within Dshi_0801 at 808.069 kb on + strand, within Dshi_0801 at 808.132 kb on + strand, within Dshi_0801 at 808.140 kb on - strand, within Dshi_0801 at 808.246 kb on + strand, within Dshi_0801 at 808.247 kb on + strand, within Dshi_0801 at 808.256 kb on + strand, within Dshi_0801 at 808.259 kb on - strand, within Dshi_0801 at 808.280 kb on - strand, within Dshi_0801 at 808.401 kb on - strand at 808.544 kb on + strand at 808.544 kb on + strand at 808.631 kb on - strand, within Dshi_0802 at 808.672 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.727 kb on - strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.734 kb on + strand, within Dshi_0802 at 808.828 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.838 kb on + strand, within Dshi_0802 at 808.862 kb on + strand, within Dshi_0802 at 808.880 kb on - strand, within Dshi_0802 at 809.008 kb on - strand, within Dshi_0802 at 809.010 kb on - strand, within Dshi_0802 at 809.116 kb on + strand, within Dshi_0802 at 809.179 kb on + strand, within Dshi_0802 at 809.182 kb on - strand at 809.233 kb on + strand at 809.271 kb on - strand at 809.271 kb on - strand at 809.378 kb on - strand at 809.573 kb on + strand, within Dshi_0803 at 809.578 kb on + strand, within Dshi_0803 at 809.581 kb on - strand, within Dshi_0803 at 809.586 kb on - strand, within Dshi_0803 at 809.698 kb on - strand, within Dshi_0803 at 809.779 kb on + strand, within Dshi_0803 at 809.805 kb on + strand, within Dshi_0803 at 809.847 kb on + strand, within Dshi_0803 at 809.854 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.920 kb on - strand, within Dshi_0803 at 809.944 kb on - strand, within Dshi_0803 at 809.975 kb on - strand, within Dshi_0803 at 810.035 kb on + strand, within Dshi_0803 at 810.068 kb on + strand, within Dshi_0803 at 810.103 kb on + strand, within Dshi_0803 at 810.104 kb on + strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803 at 810.117 kb on - strand, within Dshi_0803
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 807,548 + Dshi_0801 0.28 -0.1 807,652 + Dshi_0801 0.35 -0.5 807,662 + Dshi_0801 0.36 +0.3 807,663 + Dshi_0801 0.36 +0.2 807,670 - Dshi_0801 0.37 -0.3 807,670 - Dshi_0801 0.37 +0.0 807,741 + Dshi_0801 0.42 +0.6 807,775 - Dshi_0801 0.44 -1.4 807,781 - Dshi_0801 0.45 +1.1 807,839 + Dshi_0801 0.49 +0.8 807,840 + Dshi_0801 0.49 -0.1 807,872 + Dshi_0801 0.52 -0.5 807,915 + Dshi_0801 0.55 +0.9 808,038 + Dshi_0801 0.64 -0.5 808,046 - Dshi_0801 0.64 -0.7 808,069 + Dshi_0801 0.66 -0.4 808,132 + Dshi_0801 0.71 -0.7 808,140 - Dshi_0801 0.71 +1.1 808,246 + Dshi_0801 0.79 -0.1 808,247 + Dshi_0801 0.79 -1.8 808,256 + Dshi_0801 0.80 -1.3 808,259 - Dshi_0801 0.80 -0.2 808,280 - Dshi_0801 0.82 -0.7 808,401 - -0.3 808,544 + -0.2 808,544 + -0.7 808,631 - Dshi_0802 0.14 -0.3 808,672 - Dshi_0802 0.20 -2.1 808,727 - Dshi_0802 0.28 -1.2 808,727 - Dshi_0802 0.28 -0.5 808,734 + Dshi_0802 0.29 -0.6 808,734 + Dshi_0802 0.29 -0.0 808,828 + Dshi_0802 0.41 -1.7 808,838 + Dshi_0802 0.43 +0.9 808,838 + Dshi_0802 0.43 -0.4 808,862 + Dshi_0802 0.46 -0.8 808,880 - Dshi_0802 0.49 -0.1 809,008 - Dshi_0802 0.66 -0.5 809,010 - Dshi_0802 0.66 +0.1 809,116 + Dshi_0802 0.81 +0.9 809,179 + Dshi_0802 0.90 -1.9 809,182 - -1.3 809,233 + -0.9 809,271 - +0.3 809,271 - -1.1 809,378 - -0.1 809,573 + Dshi_0803 0.22 +0.2 809,578 + Dshi_0803 0.22 -2.1 809,581 - Dshi_0803 0.22 -0.3 809,586 - Dshi_0803 0.23 -1.6 809,698 - Dshi_0803 0.32 +0.8 809,779 + Dshi_0803 0.38 -0.1 809,805 + Dshi_0803 0.41 +1.3 809,847 + Dshi_0803 0.44 -0.4 809,854 - Dshi_0803 0.45 -0.9 809,920 - Dshi_0803 0.50 +0.0 809,920 - Dshi_0803 0.50 -1.4 809,944 - Dshi_0803 0.52 -0.8 809,975 - Dshi_0803 0.54 -0.1 810,035 + Dshi_0803 0.59 +1.1 810,068 + Dshi_0803 0.62 -0.5 810,103 + Dshi_0803 0.65 -0.3 810,104 + Dshi_0803 0.65 +0.2 810,117 - Dshi_0803 0.66 +0.4 810,117 - Dshi_0803 0.66 +0.1
Or see this region's nucleotide sequence