Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0700 and Dshi_0701 are separated by 52 nucleotides Dshi_0701 and Dshi_0702 overlap by 4 nucleotides Dshi_0702 and Dshi_0703 overlap by 1 nucleotides
Dshi_0700: Dshi_0700 - AMP-dependent synthetase and ligase (RefSeq), at 706,599 to 708,116
_0700
Dshi_0701: Dshi_0701 - Methyltransferase type 12 (RefSeq), at 708,169 to 708,822
_0701
Dshi_0702: Dshi_0702 - WbqC-like family protein (RefSeq), at 708,819 to 709,466
_0702
Dshi_0703: Dshi_0703 - hypothetical protein (RefSeq), at 709,466 to 710,386
_0703
Position (kb) 708
709 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 707.185 kb on - strand, within Dshi_0700 at 707.211 kb on - strand, within Dshi_0700 at 707.213 kb on + strand, within Dshi_0700 at 707.224 kb on + strand, within Dshi_0700 at 707.268 kb on + strand, within Dshi_0700 at 707.400 kb on + strand, within Dshi_0700 at 707.615 kb on + strand, within Dshi_0700 at 707.643 kb on - strand, within Dshi_0700 at 707.684 kb on + strand, within Dshi_0700 at 707.736 kb on + strand, within Dshi_0700 at 707.741 kb on + strand, within Dshi_0700 at 707.741 kb on + strand, within Dshi_0700 at 707.842 kb on - strand, within Dshi_0700 at 707.870 kb on - strand, within Dshi_0700 at 707.872 kb on + strand, within Dshi_0700 at 707.931 kb on + strand, within Dshi_0700 at 707.939 kb on - strand, within Dshi_0700 at 707.997 kb on - strand at 707.997 kb on - strand at 708.014 kb on + strand at 708.031 kb on - strand at 708.031 kb on - strand at 708.075 kb on + strand at 708.082 kb on + strand at 708.105 kb on + strand at 708.260 kb on - strand, within Dshi_0701 at 708.361 kb on + strand, within Dshi_0701 at 708.377 kb on + strand, within Dshi_0701 at 708.380 kb on - strand, within Dshi_0701 at 708.384 kb on - strand, within Dshi_0701 at 708.539 kb on + strand, within Dshi_0701 at 708.582 kb on + strand, within Dshi_0701 at 708.673 kb on + strand, within Dshi_0701 at 708.809 kb on - strand at 708.945 kb on + strand, within Dshi_0702 at 708.945 kb on + strand, within Dshi_0702 at 709.034 kb on - strand, within Dshi_0702 at 709.183 kb on + strand, within Dshi_0702 at 709.319 kb on + strand, within Dshi_0702 at 709.385 kb on + strand, within Dshi_0702 at 709.438 kb on + strand at 709.441 kb on - strand at 709.573 kb on - strand, within Dshi_0703 at 709.685 kb on - strand, within Dshi_0703
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 707,185 - Dshi_0700 0.39 -0.8 707,211 - Dshi_0700 0.40 -0.1 707,213 + Dshi_0700 0.40 -0.4 707,224 + Dshi_0700 0.41 +0.0 707,268 + Dshi_0700 0.44 +0.0 707,400 + Dshi_0700 0.53 +0.6 707,615 + Dshi_0700 0.67 -2.4 707,643 - Dshi_0700 0.69 -0.5 707,684 + Dshi_0700 0.71 -0.1 707,736 + Dshi_0700 0.75 -1.0 707,741 + Dshi_0700 0.75 -1.7 707,741 + Dshi_0700 0.75 +0.5 707,842 - Dshi_0700 0.82 +0.2 707,870 - Dshi_0700 0.84 -0.4 707,872 + Dshi_0700 0.84 -1.1 707,931 + Dshi_0700 0.88 -1.7 707,939 - Dshi_0700 0.88 -1.2 707,997 - -0.0 707,997 - -2.5 708,014 + +0.0 708,031 - +0.7 708,031 - -0.4 708,075 + +0.2 708,082 + +0.7 708,105 + -1.9 708,260 - Dshi_0701 0.14 +2.7 708,361 + Dshi_0701 0.29 +3.3 708,377 + Dshi_0701 0.32 +2.5 708,380 - Dshi_0701 0.32 +2.3 708,384 - Dshi_0701 0.33 +3.6 708,539 + Dshi_0701 0.57 +2.6 708,582 + Dshi_0701 0.63 +3.2 708,673 + Dshi_0701 0.77 +2.8 708,809 - +3.3 708,945 + Dshi_0702 0.19 +3.3 708,945 + Dshi_0702 0.19 +3.9 709,034 - Dshi_0702 0.33 +2.8 709,183 + Dshi_0702 0.56 +3.0 709,319 + Dshi_0702 0.77 +2.8 709,385 + Dshi_0702 0.87 +3.5 709,438 + +3.1 709,441 - +3.8 709,573 - Dshi_0703 0.12 +2.5 709,685 - Dshi_0703 0.24 +3.4
Or see this region's nucleotide sequence